Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g076190.3 Solanum lycopersicum HOM05D006140 ORTHO05D007834 0.0e+00 1343.2 695 100.0
Sopen08g024830 Solanum pennellii HOM05D006140 ORTHO05D007834 0.0e+00 1248.4 708 93.1
Nitab4.5_0000543g0200 Nicotiana tabacum HOM05D006140 ORTHO05D007834 1.5e-263 912.9 740 68.2
Peaxi162Scf00879g00021 Petunia axillaris HOM05D006140 ORTHO05D007834 1.6e-257 892.9 705 69.9
Nitab4.5_0003023g0010 Nicotiana tabacum HOM05D006140 ORTHO05D007834 4.8e-246 854.7 741 64.8
Dinv06909 Davidia involucrata HOM05D006140 ORTHO05D007834 3.8e-150 536.2 716 45.7
PGSC0003DMG401009319 Solanum tuberosum HOM05D006140 ORTHO05D007834 1.2e-148 531.2 278 97.8
PGSC0003DMG402009319 Solanum tuberosum HOM05D006140 ORTHO05D007834 2.8e-137 493.4 325 84.3
Actinidia14773 Actinidia chinensis HOM05D006140 ORTHO05D007834 1.4e-133 481.1 729 41.7
CSS0008724 Camellia sinensis var. sinensis HOM05D006140 ORTHO05D007834 4.8e-121 439.5 763 40.2
Migut.A00588 Erythranthe guttata HOM05D006140 ORTHO05D007834 2.2e-113 414.1 720 39.7
SGA_v2.0_scaffold89G27431 Striga asiatica HOM05D006140 ORTHO05D007834 4.1e-112 409.8 728 38.6
TAR629G0094 Trochodendron aralioides HOM05D006140 ORTHO05D007834 2.6e-111 407.1 733 36.6
CiPaw.11G100200 Carya illinoinensis HOM05D006140 ORTHO05D007834 1.4e-107 394.8 739 38.3
Prupe.5G025700 Prunus persica HOM05D006140 ORTHO05D007834 1.8e-107 394.4 730 37.0
TWI60G0968 Tripterygium wilfordii HOM05D006140 ORTHO05D007834 6.7e-107 392.5 752 38.3
Gohir.A12G205000 Gossypium hirsutum HOM05D006140 ORTHO05D007834 2.2e-102 377.5 730 36.8
QL12p000198 Quercus lobata HOM05D006140 ORTHO05D007834 1.1e-101 375.2 789 36.2
Manes.17G016001 Manihot esculenta HOM05D006140 ORTHO05D007834 6.1e-100 369.4 728 35.6
vmacro14212 Vaccinium macrocarpon HOM05D006140 ORTHO05D007834 8.0e-100 369.0 919 33.5
Duzib205G1045 Durio zibethinus HOM05D006140 ORTHO05D007834 2.3e-99 367.5 740 36.8
Potri.003G098700 Populus trichocarpa HOM05D006140 ORTHO05D007834 3.7e-97 360.1 732 36.2
DCAR_008203 Daucus carota HOM05D006140 ORTHO05D007834 6.3e-97 359.4 727 35.4
SalBow1G1748 Salvia bowleyana HOM05D006140 ORTHO05D007834 1.1e-96 358.6 725 37.7
Atru.chr6.1557 Acer truncatum HOM05D006140 ORTHO05D007834 1.8e-96 357.8 780 33.1
MD06G1024600 Malus domestica HOM05D006140 ORTHO05D007834 5.3e-96 356.3 672 37.2
Sed0012782 Sechium edule HOM05D006140 ORTHO05D007834 5.3e-96 356.3 738 35.1
Thecc.03G312700 Theobroma cacao HOM05D006140 ORTHO05D007834 9.1e-96 355.5 700 36.6
Sc22g0001920 Simmondsia chinensis HOM05D006140 ORTHO05D007834 4.5e-95 353.2 735 34.0
Nn1g01908 Nelumbo nucifera HOM05D006140 ORTHO05D007834 1.0e-94 352.1 746 33.6
Cfa012537 Carpinus fangiana HOM05D006140 ORTHO05D007834 1.3e-94 351.7 704 38.1
PGR042G2343 Punica granatum HOM05D006140 ORTHO05D007834 1.3e-94 351.7 745 35.8
ClCG09G011510 Citrullus lanatus HOM05D006140 ORTHO05D007834 1.1e-93 348.6 742 34.6
FAN18G2089 Fragaria x ananassa HOM05D006140 ORTHO05D007834 1.9e-93 347.8 715 34.8
Gohir.D12G207400 Gossypium hirsutum HOM05D006140 ORTHO05D007834 9.4e-93 345.5 728 34.9
Gorai.008G222800 Gossypium raimondii HOM05D006140 ORTHO05D007834 3.6e-92 343.6 743 35.8
FAN18G2328 Fragaria x ananassa HOM05D006140 ORTHO05D007834 6.1e-92 342.8 716 34.4
Rhsim07G0134400 Rhododendron simsii HOM05D006140 ORTHO05D007834 8.0e-92 342.4 897 32.7
CsaV3_3G048750 Cucumis sativus L. HOM05D006140 ORTHO05D007834 1.8e-91 341.3 737 34.7
FvH4_5g23380 Fragaria vesca HOM05D006140 ORTHO05D007834 1.2e-90 338.6 715 34.0
Potri.001G134800 Populus trichocarpa HOM05D006140 ORTHO05D007834 1.5e-90 338.2 738 35.6
VMungo1215G1486 Vigna mungo HOM05D006140 ORTHO05D007834 5.4e-88 329.7 684 36.0
Lalb_Chr09g0325351 Lupinus albus HOM05D006140 ORTHO05D007834 1.2e-87 328.6 713 36.2
FAN08G2467 Fragaria x ananassa HOM05D006140 ORTHO05D007834 1.6e-87 328.2 705 33.8
Glyma.01G010800 Glycine max HOM05D006140 ORTHO05D007834 4.5e-87 326.6 722 35.5
RcHm_v2.0_Chr7g0212401 Rosa chinensis HOM05D006140 ORTHO05D007834 5.9e-87 326.2 731 33.0
ECA233G4025 Erigeron canadensis HOM05D006140 ORTHO05D007834 1.3e-86 325.1 725 33.8
BcaC06g31534 Brassica carinata HOM05D006140 ORTHO05D007834 2.5e-85 320.9 719 34.6
Sp2g10500 Schrenkiella parvula HOM05D006140 ORTHO05D007834 5.5e-85 319.7 737 32.8
BcaC06g34418 Brassica carinata HOM05D006140 ORTHO05D007834 1.6e-84 318.2 719 34.6
C07p28720 Brassica napus HOM05D006140 ORTHO05D007834 1.6e-84 318.2 719 34.6
BolC7t43410H Brassica oleracea HOM05D006140 ORTHO05D007834 1.6e-84 318.2 719 34.6
Aqoxy3G02157 Aquilegia oxysepala HOM05D006140 ORTHO05D007834 1.4e-83 315.1 515 36.7
HanXRQChr15g0469721 Helianthus annuus HOM05D006140 ORTHO05D007834 2.0e-82 311.2 692 35.4
THA.LOC104798454 Tarenaya hassleriana HOM05D006140 ORTHO05D007834 2.6e-82 310.8 718 33.8
A06p46490 Brassica napus HOM05D006140 ORTHO05D007834 4.4e-82 310.1 731 34.3
Psat2g140200 Pisum sativum HOM05D006140 ORTHO05D007834 1.7e-81 308.1 756 32.0
BraA06t27522Z Brassica rapa HOM05D006140 ORTHO05D007834 2.2e-81 307.8 731 34.2
Lj2g0005195 Lotus japonicus HOM05D006140 ORTHO05D007834 2.2e-81 307.8 717 33.9
arahy.Tifrunner.gnm1.ann1.B53Y8P Arachis hypogaea HOM05D006140 ORTHO05D007834 8.3e-81 305.8 738 33.5
arahy.Tifrunner.gnm1.ann1.HKBA6R Arachis hypogaea HOM05D006140 ORTHO05D007834 8.3e-81 305.8 738 33.5
Glyma.09G210300 Glycine max HOM05D006140 ORTHO05D007834 8.3e-81 305.8 733 33.3
Phvul.002G133700 Phaseolus vulgaris HOM05D006140 ORTHO05D007834 2.4e-80 304.3 739 33.2
Lsat_1_v5_gn_6_17700 Lactuca sativa HOM05D006140 ORTHO05D007834 4.1e-80 303.5 798 32.3
CANSAT21G0745 Cannabis sativa HOM05D006140 ORTHO05D007834 7.7e-79 299.3 679 36.1
Aa31LG9G7440 Aethionema arabicum HOM05D006140 ORTHO05D007834 1.0e-78 298.9 724 31.9
Ca_25157_v3 Cicer arietinum L. HOM05D006140 ORTHO05D007834 1.9e-77 294.7 748 32.8
FAN04G1734 Fragaria x ananassa HOM05D006140 ORTHO05D007834 2.1e-76 291.2 694 31.7
AUR62027322 Chenopodium quinoa HOM05D006140 ORTHO05D007834 2.8e-76 290.8 666 32.0
EL10Ac5g11927 Beta vulgaris HOM05D006140 ORTHO05D007834 5.7e-74 283.1 708 31.2
TPR.G19464 Trifolium pratense HOM05D006140 ORTHO05D007834 2.3e-70 271.2 748 30.9
MELO3C030376.2 Cucumis melo HOM05D006140 ORTHO05D007834 3.0e-70 270.8 804 31.0
Medtr5g027920 Medicago truncatula HOM05D006140 ORTHO05D007834 8.6e-70 269.2 739 31.0
Thhalv10000816m.g Eutrema salsugineum HOM05D006140 ORTHO05D007834 1.1e-69 268.9 728 30.2
PSO063G5188 Papaver somniferum HOM05D006140 ORTHO05D007834 4.3e-69 266.9 789 28.1
CARHR176410 Cardamine hirsuta HOM05D006140 ORTHO05D007834 8.0e-68 262.7 559 33.6
PSO782G1224 Papaver somniferum HOM05D006140 ORTHO05D007834 8.0e-68 262.7 795 28.3
Cc00_g09430 Coffea canephora HOM05D006140 ORTHO05D007834 2.3e-67 261.2 273 49.5
AUR62007410 Chenopodium quinoa HOM05D006140 ORTHO05D007834 3.1e-67 260.8 586 32.4
GSVIVG01012994001 Vitis vinifera HOM05D006140 ORTHO05D007834 4.0e-67 260.4 290 49.3
Sabra01G0104200 Salix brachista HOM05D006140 ORTHO05D007834 2.0e-66 258.1 539 34.5
Hund11103 Selenicereus undatus HOM05D006140 ORTHO05D007834 1.7e-65 255.0 726 29.9
AL8G13070 Arabidopsis lyrata HOM05D006140 ORTHO05D007834 2.9e-65 254.2 741 29.0
Ciclev10003207m.g Citrus clementina HOM05D006140 ORTHO05D007834 1.1e-64 252.3 351 41.9
AT5G45610 Arabidopsis thaliana HOM05D006140 ORTHO05D007834 9.2e-64 249.2 727 28.9
Carub.0008s0241 Capsella rubella HOM05D006140 ORTHO05D007834 2.2e-57 228.0 656 30.2
ATR0829G104 Amborella trichopoda HOM05D006140 ORTHO05D007834 1.4e-56 225.3 617 29.2
HPP92_020808 Vanilla planifolia HOM05D006140 ORTHO05D007834 1.6e-55 221.9 786 26.8
Ah.12g055990 Amaranthus hybridus HOM05D006140 ORTHO05D007834 1.8e-51 208.4 637 28.4
Lj3g0005794 Lotus japonicus HOM05D006140 ORTHO05D007834 8.9e-43 179.5 225 44.4
Cc00_g09420 Coffea canephora HOM05D006140 ORTHO05D007834 1.2e-42 179.1 399 37.1
unitig_32.g10971 Utricularia gibba HOM05D006140 ORTHO05D007834 1.3e-41 175.6 494 29.1
Zm00001eb208860 Zea mays HOM05D006140 ORTHO05D007834 1.2e-39 169.1 503 29.2
Eucgr.E01307 Eucalyptus grandis HOM05D006140 ORTHO05D007834 1.7e-38 165.2 414 32.6
Haze_08125 Corylus avellana HOM05D006140 ORTHO05D007834 3.6e-36 157.5 151 57.6
MBI04_g36019_MAGBIO Magnolia biondii HOM05D006140 ORTHO05D007834 5.1e-30 137.1 435 31.0
SEGI_17370 Sequoiadendron giganteum HOM05D006140 ORTHO05D007834 7.4e-29 133.3 837 21.7
Hma1.2p1_1460F.1_g284980 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 1.3e-28 132.5 190 44.2
CDE02G1222 Ceratophyllum demersum HOM05D006140 ORTHO05D007834 8.4e-25 119.8 150 45.3
Actinidia24581 Actinidia chinensis HOM05D006140 ORTHO05D007834 1.1e-24 119.4 287 33.1
MBI04_g20983_MAGBIO Magnolia biondii HOM05D006140 ORTHO05D007834 2.4e-24 118.2 138 48.6
Lj6g0014120 Lotus japonicus HOM05D006140 ORTHO05D007834 5.5e-24 117.1 150 44.0
COL.COLO4_16905 Corchorus olitorius HOM05D006140 ORTHO05D007834 4.3e-21 107.5 355 28.7
SHI20257 Sapria himalayana HOM05D006140 ORTHO05D007834 9.0e-19 99.8 160 41.9
Hma1.2p1_1460F.1_g284990 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 1.9e-16 92.0 165 45.5
Ciclev10003621m.g Citrus clementina HOM05D006140 ORTHO05D007834 1.5e-13 82.4 309 27.5
unitig_32.g10972 Utricularia gibba HOM05D006140 ORTHO05D007834 9.7e-13 79.7 145 42.8
CDE02G0505 Ceratophyllum demersum HOM05D006140 ORTHO05D007834 2.8e-12 78.2 329 25.5
SHI20259 Sapria himalayana HOM05D006140 ORTHO05D007834 9.0e-11 73.2 296 24.3
Pp3c4_25200 Physcomitrium patens HOM05D006140 ORTHO05D007834 7.6e-10 70.1 348 22.4
Hma1.2p1_1819F.1_g304030 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 5.0e-09 67.4 90 36.7
Oeu063929.1 Olea europaea HOM05D006140 ORTHO05D007834 7.2e-08 63.5 49 61.2
Cpa.g.sc16.12 Carica papaya HOM05D006140 ORTHO05D007834 1.2e-07 62.8 134 31.3
AagrBONN_evm.TU.Sc2ySwM_344.4141 Anthoceros agrestis HOM05D006140 ORTHO05D007834 2.7e-07 61.6 177 25.4
Medtr5g019630 Medicago truncatula HOM05D006140 ORTHO05D007834 6.7e-06 57.0 84 45.2


User provided reference genes

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