Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g075780.4 Solanum lycopersicum HOM05D005652 ORTHO05D007300 6.3e-64 247.3 125 100.0
PGSC0003DMG400030853 Solanum tuberosum HOM05D005652 ORTHO05D007300 1.1e-47 193.4 99 98.0
Nitab4.5_0000030g0080 Nicotiana tabacum HOM05D005652 ORTHO05D007300 2.7e-46 188.7 99 98.0
Nitab4.5_0013867g0020 Nicotiana tabacum HOM05D005652 ORTHO05D007300 6.5e-45 184.1 97 94.8
Solyc12g096120.2 Solanum lycopersicum HOM05D005652 ORTHO05D007300 6.5e-45 184.1 100 93.0
Sopen12g032000 Solanum pennellii HOM05D005652 ORTHO05D007300 6.5e-45 184.1 100 93.0
PGSC0003DMG400029291 Solanum tuberosum HOM05D005652 ORTHO05D007300 8.5e-45 183.7 100 93.0
Peaxi162Scf00408g00839 Petunia axillaris HOM05D005652 ORTHO05D007300 4.2e-44 181.4 97 95.9
Dinv27358 Davidia involucrata HOM05D005652 ORTHO05D007300 9.4e-44 180.3 96 95.8
Peaxi162Scf00876g00433 Petunia axillaris HOM05D005652 ORTHO05D007300 1.2e-43 179.9 97 92.8
Potri.002G087200 Populus trichocarpa HOM05D005652 ORTHO05D007300 3.6e-43 178.3 95 96.8
Sabra02G0068700 Salix brachista HOM05D005652 ORTHO05D007300 3.6e-43 178.3 95 96.8
EL10Ac1g00017 Beta vulgaris HOM05D005652 ORTHO05D007300 8.0e-43 177.2 99 90.9
Oeu050252.1 Olea europaea HOM05D005652 ORTHO05D007300 1.4e-42 176.4 97 91.8
Manes.18G074500 Manihot esculenta HOM05D005652 ORTHO05D007300 1.8e-42 176.0 93 93.5
SalBow7G3105 Salvia bowleyana HOM05D005652 ORTHO05D007300 1.8e-42 176.0 94 95.7
Nitab4.5_0014082g0020 Nicotiana tabacum HOM05D005652 ORTHO05D007300 2.3e-42 175.6 100 92.0
Ah.05g172270 Amaranthus hybridus HOM05D005652 ORTHO05D007300 3.0e-42 175.3 100 91.0
MSTRG.22423 Avicennia marina HOM05D005652 ORTHO05D007300 3.0e-42 175.3 127 74.8
Potri.005G173800 Populus trichocarpa HOM05D005652 ORTHO05D007300 3.0e-42 175.3 94 95.7
arahy.Tifrunner.gnm1.ann1.AJPJ4J Arachis hypogaea HOM05D005652 ORTHO05D007300 6.8e-42 174.1 88 98.9
CAN.G1483.5 Capsicum annuum HOM05D005652 ORTHO05D007300 6.8e-42 174.1 89 98.9
Hund27043 Selenicereus undatus HOM05D005652 ORTHO05D007300 6.8e-42 174.1 95 94.7
Nitab4.5_0000943g0120 Nicotiana tabacum HOM05D005652 ORTHO05D007300 1.2e-41 173.3 99 91.9
unitig_37.g12684 Utricularia gibba HOM05D005652 ORTHO05D007300 1.5e-41 172.9 117 77.8
CiPaw.05G226800 Carya illinoinensis HOM05D005652 ORTHO05D007300 2.0e-41 172.6 87 98.9
Migut.N03303 Erythranthe guttata HOM05D005652 ORTHO05D007300 2.0e-41 172.6 97 91.8
PGR042G1865 Punica granatum HOM05D005652 ORTHO05D007300 2.6e-41 172.2 94 93.6
TWI12G1472 Tripterygium wilfordii HOM05D005652 ORTHO05D007300 2.6e-41 172.2 93 95.7
arahy.Tifrunner.gnm1.ann1.KZ1VTZ Arachis hypogaea HOM05D005652 ORTHO05D007300 3.4e-41 171.8 88 97.7
Hma1.2p1_0009F.1_g006210 Hydrangea macrophylla HOM05D005652 ORTHO05D007300 3.4e-41 171.8 88 97.7
Medtr5g059210 Medicago truncatula HOM05D005652 ORTHO05D007300 3.4e-41 171.8 88 97.7
Psat2g096080 Pisum sativum HOM05D005652 ORTHO05D007300 3.4e-41 171.8 88 97.7
CSS0012578 Camellia sinensis var. sinensis HOM05D005652 ORTHO05D007300 5.7e-41 171.0 88 97.7
MBI09_g06382_MAGBIO Magnolia biondii HOM05D005652 ORTHO05D007300 5.7e-41 171.0 87 97.7
Oeu050889.1 Olea europaea HOM05D005652 ORTHO05D007300 5.7e-41 171.0 92 95.7
CANSAT54G2625 Cannabis sativa HOM05D005652 ORTHO05D007300 7.5e-41 170.6 86 98.8
ClCG03G009400 Citrullus lanatus HOM05D005652 ORTHO05D007300 7.5e-41 170.6 89 97.8
MELO3C003038.2 Cucumis melo HOM05D005652 ORTHO05D007300 7.5e-41 170.6 89 97.8
CsaV3_5G023210 Cucumis sativus L. HOM05D005652 ORTHO05D007300 7.5e-41 170.6 89 97.8
Lalb_Chr08g0241571 Lupinus albus HOM05D005652 ORTHO05D007300 7.5e-41 170.6 86 98.8
Lalb_Chr23g0270881 Lupinus albus HOM05D005652 ORTHO05D007300 7.5e-41 170.6 86 98.8
Sed0000902 Sechium edule HOM05D005652 ORTHO05D007300 7.5e-41 170.6 89 97.8
Hund16832 Selenicereus undatus HOM05D005652 ORTHO05D007300 7.5e-41 170.6 93 93.5
TPR.G8501 Trifolium pratense HOM05D005652 ORTHO05D007300 7.5e-41 170.6 88 96.6
AL2G37930 Arabidopsis lyrata HOM05D005652 ORTHO05D007300 1.3e-40 169.9 90 92.2
TWI56G0667 Tripterygium wilfordii HOM05D005652 ORTHO05D007300 1.3e-40 169.9 93 94.6
Cc06_g19090 Coffea canephora HOM05D005652 ORTHO05D007300 1.7e-40 169.5 93 94.6
Zm00001eb140360 Zea mays HOM05D005652 ORTHO05D007300 2.2e-40 169.1 92 92.4
Atru.chr13.1343 Acer truncatum HOM05D005652 ORTHO05D007300 2.8e-40 168.7 84 100.0
Ca_19025_v3 Cicer arietinum L. HOM05D005652 ORTHO05D007300 2.8e-40 168.7 84 100.0
Ca_26775_v3 Cicer arietinum L. HOM05D005652 ORTHO05D007300 2.8e-40 168.7 84 100.0
Ciclev10002945m.g Citrus clementina HOM05D005652 ORTHO05D007300 2.8e-40 168.7 94 93.6
Glyma.04G252400 Glycine max HOM05D005652 ORTHO05D007300 2.8e-40 168.7 85 98.8
Glyma.06G110100 Glycine max HOM05D005652 ORTHO05D007300 2.8e-40 168.7 85 98.8
Lj1g0016776 Lotus japonicus HOM05D005652 ORTHO05D007300 2.8e-40 168.7 94 93.6
MD08G1169400 Malus domestica HOM05D005652 ORTHO05D007300 2.8e-40 168.7 85 98.8
MD15G1356000 Malus domestica HOM05D005652 ORTHO05D007300 2.8e-40 168.7 85 98.8
Phvul.009G121900 Phaseolus vulgaris HOM05D005652 ORTHO05D007300 2.8e-40 168.7 85 98.8
RcHm_v2.0_Chr6g0294951 Rosa chinensis HOM05D005652 ORTHO05D007300 2.8e-40 168.7 85 98.8
BcaB05g25069 Brassica carinata HOM05D005652 ORTHO05D007300 3.7e-40 168.3 89 93.3
SGA_v2.0_scaffold24G10489 Striga asiatica HOM05D005652 ORTHO05D007300 3.7e-40 168.3 97 88.7
CARHR071220 Cardamine hirsuta HOM05D005652 ORTHO05D007300 6.3e-40 167.5 90 91.1
FAN20G1151 Fragaria x ananassa HOM05D005652 ORTHO05D007300 6.3e-40 167.5 85 97.6
FAN24G1202 Fragaria x ananassa HOM05D000102 ORTHO05D003793 6.3e-40 167.5 85 97.6
FAN27G1241 Fragaria x ananassa HOM05D005652 ORTHO05D007300 6.3e-40 167.5 85 97.6
Prupe.1G503300 Prunus persica HOM05D005652 ORTHO05D007300 6.3e-40 167.5 85 97.6
Sc23g0000830 Simmondsia chinensis HOM05D005652 ORTHO05D007300 6.3e-40 167.5 86 96.5
THA.LOC104817112 Tarenaya hassleriana HOM05D005652 ORTHO05D007300 6.3e-40 167.5 84 98.8
TAR376G0464 Trochodendron aralioides HOM05D005652 ORTHO05D007300 6.3e-40 167.5 84 98.8
Aa31LG4G7830 Aethionema arabicum HOM05D005652 ORTHO05D007300 8.3e-40 167.2 86 94.2
Duzib041G0199 Durio zibethinus HOM05D005652 ORTHO05D007300 8.3e-40 167.2 93 93.5
Duzib093G1773 Durio zibethinus HOM05D005652 ORTHO05D007300 8.3e-40 167.2 93 93.5
Glyma.14G163800 Glycine max HOM05D005652 ORTHO05D007300 8.3e-40 167.2 93 93.5
Gohir.A06G041900 Gossypium hirsutum HOM05D005652 ORTHO05D007300 8.3e-40 167.2 93 93.5
Gohir.D06G042900 Gossypium hirsutum HOM05D005652 ORTHO05D007300 8.3e-40 167.2 93 93.5
Gorai.005G091100 Gossypium raimondii HOM05D005652 ORTHO05D007300 8.3e-40 167.2 93 93.5
Gorai.010G048100 Gossypium raimondii HOM05D005652 ORTHO05D007300 8.3e-40 167.2 93 93.5
HanXRQChr14g0432351 Helianthus annuus HOM05D005652 ORTHO05D007300 8.3e-40 167.2 93 92.5
Sp5g32880 Schrenkiella parvula HOM05D005652 ORTHO05D007300 8.3e-40 167.2 86 94.2
Thecc.08G119900 Theobroma cacao HOM05D005652 ORTHO05D007300 8.3e-40 167.2 93 93.5
ATR0041G005 Amborella trichopoda HOM05D005652 ORTHO05D007300 1.1e-39 166.8 85 97.6
Nn5g28127 Nelumbo nucifera HOM05D005652 ORTHO05D007300 1.1e-39 166.8 83 100.0
THA.LOC104813142 Tarenaya hassleriana HOM05D005652 ORTHO05D007300 1.1e-39 166.8 83 100.0
GSVIVG01008919001 Vitis vinifera HOM05D005652 ORTHO05D007300 1.1e-39 166.8 83 100.0
FvH4_2g26390 Fragaria vesca HOM05D005652 ORTHO05D007300 1.4e-39 166.4 85 96.5
PSO528G0083 Papaver somniferum HOM05D005652 ORTHO05D007300 1.4e-39 166.4 84 98.8
Aqoxy6G01736 Aquilegia oxysepala HOM05D005652 ORTHO05D007300 1.8e-39 166.0 93 92.5
AT1G77710 Arabidopsis thaliana HOM05D005652 ORTHO05D007300 1.8e-39 166.0 86 94.2
BcaB02g07127 Brassica carinata HOM05D005652 ORTHO05D007300 1.8e-39 166.0 85 95.3
BcaC03g15763 Brassica carinata HOM05D005652 ORTHO05D007300 1.8e-39 166.0 85 95.3
BcaC08g45458 Brassica carinata HOM05D005652 ORTHO05D007300 1.8e-39 166.0 85 95.3
A07p27870 Brassica napus HOM05D005652 ORTHO05D007300 1.8e-39 166.0 85 95.3
C06p30860 Brassica napus HOM05D005652 ORTHO05D007300 1.8e-39 166.0 85 95.3
BolC6t38248H Brassica oleracea HOM05D005652 ORTHO05D007300 1.8e-39 166.0 85 95.3
BraA07t30426Z Brassica rapa HOM05D005652 ORTHO05D007300 1.8e-39 166.0 85 95.3
Haze_00495 Corylus avellana HOM05D000102 ORTHO05D003793 1.8e-39 166.0 96 90.6
Thhalv10019370m.g Eutrema salsugineum HOM05D005652 ORTHO05D007300 1.8e-39 166.0 86 93.0
Carub.0002s2459 Capsella rubella HOM05D005652 ORTHO05D007300 2.4e-39 165.6 84 96.4
CDE06G1598 Ceratophyllum demersum HOM05D005652 ORTHO05D007300 2.4e-39 165.6 92 93.5
CDE08G1473 Ceratophyllum demersum HOM05D005652 ORTHO05D007300 2.4e-39 165.6 92 93.5
Gohir.A02G074200 Gossypium hirsutum HOM05D005652 ORTHO05D007300 3.1e-39 165.2 93 92.5
MSTRG.1473 Avicennia marina HOM05D005652 ORTHO05D007300 4.1e-39 164.9 82 100.0
Eucgr.F03755 Eucalyptus grandis HOM05D005652 ORTHO05D007300 4.1e-39 164.9 82 100.0
PSO170G5049 Papaver somniferum HOM05D005652 ORTHO05D007300 5.4e-39 164.5 83 98.8
Os01g0962400 Oryza sativa ssp. japonica HOM05D005652 ORTHO05D007300 7.0e-39 164.1 83 97.6
Gohir.D02G081400 Gossypium hirsutum HOM05D005652 ORTHO05D007300 9.1e-39 163.7 93 92.5
Lsat_1_v5_gn_5_65281 Lactuca sativa HOM05D005652 ORTHO05D007300 1.2e-38 163.3 88 92.0
ECA238G1260 Erigeron canadensis HOM05D005652 ORTHO05D007300 1.6e-38 162.9 98 86.7
Migut.C01167 Erythranthe guttata HOM05D005652 ORTHO05D007300 2.7e-38 162.2 82 98.8
AagrBONN_evm.TU.Sc2ySwM_362.1619 Anthoceros agrestis HOM05D005652 ORTHO05D007300 1.0e-37 160.2 88 89.8
Pp3c6_16720 Physcomitrium patens HOM05D005652 ORTHO05D007300 1.0e-37 160.2 82 96.3
CBR_g44443 Chara braunii HOM05D005652 ORTHO05D007300 1.3e-37 159.8 84 94.0
Mapoly0081s0039 Marchantia polymorpha HOM05D005652 ORTHO05D007300 2.3e-37 159.1 82 95.1
SMO147G0269 Selaginella moellendorffii HOM05D005652 ORTHO05D007300 1.1e-36 156.8 93 84.9
FAN15G0151 Fragaria x ananassa HOM05D000102 ORTHO05D003793 5.5e-36 154.5 126 69.8
Actinidia02604 Actinidia chinensis HOM05D005652 ORTHO05D007300 3.6e-35 151.8 102 79.4
CAN.G947.38 Capsicum annuum HOM05D005652 ORTHO05D007300 4.1e-31 138.3 70 95.7
QL09p036189 Quercus lobata HOM05D005652 ORTHO05D007300 1.6e-30 136.3 186 48.9
Haze_27250 Corylus avellana HOM05D005652 ORTHO05D007300 2.7e-30 135.6 95 69.5
AUR62023629 Chenopodium quinoa HOM05D000102 ORTHO05D003793 5.0e-29 131.3 70 94.3
Oeu026729.1 Olea europaea HOM05D005652 ORTHO05D007300 5.0e-29 131.3 73 94.5
PRCOL_00001930 Prasinoderma coloniale HOM05D005652 ORTHO05D007300 8.6e-29 130.6 81 84.0
Rhsim11G0066600 Rhododendron simsii HOM05D005652 ORTHO05D007300 1.5e-28 129.8 64 100.0
Glyma.13G082800 Glycine max HOM05D005652 ORTHO05D007300 9.5e-28 127.1 67 92.5
SalBow7G1395 Salvia bowleyana HOM05D005652 ORTHO05D007300 4.7e-27 124.8 73 90.4
HPP92_028057 Vanilla planifolia HOM05D005652 ORTHO05D007300 1.1e-23 113.6 77 80.5
AUR62004713 Chenopodium quinoa HOM05D005652 ORTHO05D007300 9.2e-23 110.5 61 91.8
Cpa.g.sc36.14 Carica papaya HOM05D005652 ORTHO05D007300 1.9e-20 102.8 61 88.5
COL.COLO4_38344 Corchorus olitorius HOM05D005652 ORTHO05D007300 4.3e-20 101.7 51 100.0
Oeu062544.1 Olea europaea HOM05D005652 ORTHO05D007300 7.3e-20 100.9 62 87.1
BraA02t07181Z Brassica rapa HOM05D005652 ORTHO05D007300 6.2e-19 97.8 66 77.3
Sed0022236 Sechium edule HOM05D005652 ORTHO05D007300 8.0e-19 97.4 91 61.5
BolC2t09520H Brassica oleracea HOM05D005652 ORTHO05D007300 8.9e-18 94.0 47 91.5
Actinidia13808 Actinidia chinensis HOM05D005652 ORTHO05D007300 1.2e-17 93.6 50 92.0
AagrBONN_evm.TU.Sc2ySwM_344.240 Anthoceros agrestis HOM05D005652 ORTHO05D007300 1.4e-10 70.1 40 85.0
TAR381G0412 Trochodendron aralioides HOM05D000102 ORTHO05D003793 1.3e-08 63.5 32 96.9
Dinv20715 Davidia involucrata HOM05D005652 ORTHO05D185765 4.1e-07 58.5 39 76.9
Actinidia34351 Actinidia chinensis HOM05D005652 ORTHO05D057191 6.0e-06 54.7 32 81.2


User provided reference genes

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