Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g075770.3 Solanum lycopersicum HOM05D005964 ORTHO05D007242 1.1e-170 603.2 302 100.0
Sopen08g024420 Solanum pennellii HOM05D005964 ORTHO05D007242 2.4e-170 602.1 302 99.7
Nitab4.5_0002930g0010 Nicotiana tabacum HOM05D005964 ORTHO05D007242 9.6e-143 510.4 301 84.7
Nitab4.5_0000030g0090 Nicotiana tabacum HOM05D005964 ORTHO05D007242 1.6e-142 509.6 300 85.0
Peaxi162Scf02295g00024 Petunia axillaris HOM05D005964 ORTHO05D007242 3.8e-139 498.4 300 82.0
PGSC0003DMG400030871 Solanum tuberosum HOM05D005964 ORTHO05D007242 4.1e-101 372.1 185 96.8
Dinv28013 Davidia involucrata HOM05D005964 ORTHO05D007242 1.5e-95 353.6 284 63.0
Oeu046805.1 Olea europaea HOM05D005964 ORTHO05D007242 3.2e-90 335.9 286 58.7
Actinidia18160 Actinidia chinensis HOM05D005964 ORTHO05D007242 5.2e-88 328.6 276 59.4
Migut.E01349 Erythranthe guttata HOM05D005964 ORTHO05D007242 5.2e-88 328.6 292 58.2
Cc08_g05080 Coffea canephora HOM05D005964 ORTHO05D007242 2.6e-87 326.2 254 65.4
Prupe.5G020400 Prunus persica HOM05D005964 ORTHO05D007242 2.6e-87 326.2 274 60.6
Lj8A334G75 Lonicera japonica HOM05D005964 ORTHO05D007242 4.4e-87 325.5 292 55.1
SGA_v2.0_scaffold111G31365 Striga asiatica HOM05D005964 ORTHO05D007242 9.8e-87 324.3 297 57.6
MD00G1001800 Malus domestica HOM05D005964 ORTHO05D007242 2.8e-86 322.8 302 56.3
Actinidia14743 Actinidia chinensis HOM05D005964 ORTHO05D007242 3.7e-86 322.4 290 57.6
Gohir.A03G000012 Gossypium hirsutum HOM05D005964 ORTHO05D007242 1.4e-85 320.5 277 58.8
RcHm_v2.0_Chr7g0213391 Rosa chinensis HOM05D005964 ORTHO05D007242 1.8e-85 320.1 289 55.4
Manes.17G003600 Manihot esculenta HOM05D005964 ORTHO05D007242 2.0e-84 316.6 296 54.4
Thecc.03G317600 Theobroma cacao HOM05D005964 ORTHO05D007242 5.9e-84 315.1 276 58.7
FvH4_5g23960 Fragaria vesca HOM05D005964 ORTHO05D007242 7.7e-84 314.7 274 56.9
FAN13G2421 Fragaria x ananassa HOM05D005964 ORTHO05D007242 7.7e-84 314.7 274 56.9
MD06G1015300 Malus domestica HOM05D005964 ORTHO05D007242 1.7e-83 313.5 276 58.7
Duzib084G0482 Durio zibethinus HOM05D005964 ORTHO05D007242 2.3e-83 313.2 292 55.8
MSTRG.1771 Avicennia marina HOM05D005964 ORTHO05D007242 8.6e-83 311.2 303 55.8
FAN18G2518 Fragaria x ananassa HOM05D005964 ORTHO05D007242 8.6e-83 311.2 274 56.6
Duzib205G1143 Durio zibethinus HOM05D005964 ORTHO05D007242 1.1e-82 310.8 277 58.5
Dinv22873 Davidia involucrata HOM05D005964 ORTHO05D007242 1.5e-82 310.5 267 59.2
CiPaw.11G103200 Carya illinoinensis HOM05D005964 ORTHO05D007242 2.5e-82 309.7 274 59.9
Potri.001G130900 Populus trichocarpa HOM05D005964 ORTHO05D007242 7.2e-82 308.1 301 55.1
Cfa012590 Carpinus fangiana HOM05D005964 ORTHO05D007242 9.5e-82 307.8 291 56.0
Eucgr.E01239 Eucalyptus grandis HOM05D005964 ORTHO05D007242 1.0e-80 304.3 280 56.1
CANSAT21G0049 Cannabis sativa HOM05D005964 ORTHO05D007242 1.4e-80 303.9 274 56.9
Gohir.A08G150100 Gossypium hirsutum HOM05D005964 ORTHO05D007242 1.4e-80 303.9 277 56.7
Hma1.2p1_0544F.1_g175520 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 1.4e-80 303.9 274 58.0
Eucgr.E01230 Eucalyptus grandis HOM05D005964 ORTHO05D007242 2.3e-80 303.1 280 55.7
Gohir.D03G177900 Gossypium hirsutum HOM05D005964 ORTHO05D007242 2.3e-80 303.1 299 54.2
Gorai.003G187200 Gossypium raimondii HOM05D005964 ORTHO05D007242 2.3e-80 303.1 299 54.2
Gorai.004G178600 Gossypium raimondii HOM05D005964 ORTHO05D007242 3.0e-80 302.8 277 57.0
PGR042G2449 Punica granatum HOM05D005964 ORTHO05D007242 3.0e-80 302.8 299 56.2
Rhsim07G0138900 Rhododendron simsii HOM05D005964 ORTHO05D007242 5.2e-80 302.0 378 46.0
HanXRQChr13g0412031 Helianthus annuus HOM05D005964 ORTHO05D007242 6.8e-80 301.6 292 54.1
ECA240G3292 Erigeron canadensis HOM05D005964 ORTHO05D007242 2.0e-79 300.1 293 54.6
MELO3C013795.2 Cucumis melo HOM05D005964 ORTHO05D007242 4.4e-79 298.9 294 54.4
Lsat_1_v5_gn_5_58981 Lactuca sativa HOM05D005964 ORTHO05D007242 4.4e-79 298.9 289 54.7
Atru.chr6.1471 Acer truncatum HOM05D005964 ORTHO05D007242 5.7e-79 298.5 274 56.9
CsaV3_3G001060 Cucumis sativus L. HOM05D005964 ORTHO05D007242 9.8e-79 297.7 294 54.1
GSVIVG01022785001 Vitis vinifera HOM05D005964 ORTHO05D007242 2.2e-78 296.6 244 63.1
Lalb_Chr05g0215451 Lupinus albus HOM05D005964 ORTHO05D007242 1.8e-77 293.5 296 51.4
unitig_899.g14736 Utricularia gibba HOM05D005964 ORTHO05D007242 1.8e-77 293.5 288 54.5
CSS0036776 Camellia sinensis var. sinensis HOM05D005964 ORTHO05D007242 3.2e-77 292.7 224 60.7
Potri.003G103000 Populus trichocarpa HOM05D005964 ORTHO05D007242 4.1e-77 292.4 298 54.0
Glyma.09G213600 Glycine max HOM05D005964 ORTHO05D007242 9.2e-77 291.2 289 52.6
Ciclev10002048m.g Citrus clementina HOM05D005964 ORTHO05D007242 1.2e-76 290.8 302 51.0
Sed0000446 Sechium edule HOM05D005964 ORTHO05D007242 2.3e-75 286.6 297 52.2
Sc01g0007030 Simmondsia chinensis HOM05D005964 ORTHO05D007242 3.9e-75 285.8 259 57.5
Glyma.01G149400 Glycine max HOM05D005964 ORTHO05D007242 6.6e-75 285.0 289 51.9
Lj2g0015502 Lotus japonicus HOM05D005964 ORTHO05D007242 1.5e-74 283.9 288 52.4
TAR381G0569 Trochodendron aralioides HOM05D005964 ORTHO05D007242 2.5e-74 283.1 274 54.7
Psat2g142160 Pisum sativum HOM05D005964 ORTHO05D007242 9.5e-74 281.2 286 50.3
VMungo1215G0316 Vigna mungo HOM05D005964 ORTHO05D007242 9.5e-74 281.2 295 51.5
EL10Ac5g11971 Beta vulgaris HOM05D005964 ORTHO05D007242 2.1e-73 280.0 287 51.6
arahy.Tifrunner.gnm1.ann1.NL6YXC Arachis hypogaea HOM05D005964 ORTHO05D007242 1.2e-71 274.2 274 52.2
arahy.Tifrunner.gnm1.ann1.PBCI2P Arachis hypogaea HOM05D005964 ORTHO05D007242 1.2e-71 274.2 274 52.2
Gohir.D08G171200 Gossypium hirsutum HOM05D005964 ORTHO05D007242 1.3e-70 270.8 229 60.7
Sabra03G0070200 Salix brachista HOM05D005964 ORTHO05D007242 3.7e-70 269.2 236 59.7
TPR.G17260 Trifolium pratense HOM05D005964 ORTHO05D007242 4.9e-70 268.9 275 51.6
Thhalv10025843m.g Eutrema salsugineum HOM05D005964 ORTHO05D007242 1.4e-69 267.3 290 49.7
SalBow8G2874 Salvia bowleyana HOM05D005964 ORTHO05D007242 1.9e-69 266.9 254 57.1
BcaNung04009 Brassica carinata HOM05D005964 ORTHO05D007242 1.2e-68 264.2 286 49.3
DCAR_008183 Daucus carota HOM05D005964 ORTHO05D007242 1.6e-68 263.8 285 51.2
TWI12G1028 Tripterygium wilfordii HOM05D005964 ORTHO05D007242 2.0e-68 263.5 258 55.4
Medtr5g026860 Medicago truncatula HOM05D005964 ORTHO05D007242 4.6e-68 262.3 275 49.5
BcaC06g30611 Brassica carinata HOM05D005964 ORTHO05D007242 1.0e-67 261.2 286 49.3
BcaNung03076 Brassica carinata HOM05D005964 ORTHO05D007242 1.7e-67 260.4 294 48.3
Sp7g17840 Schrenkiella parvula HOM05D005964 ORTHO05D007242 2.3e-67 260.0 289 49.5
AT4G19140 Arabidopsis thaliana HOM05D005964 ORTHO05D007242 4.3e-66 255.8 297 48.5
MSTRG.13905 Avicennia marina HOM05D005964 ORTHO05D007242 2.1e-65 253.4 194 66.5
BcaC09g51437 Brassica carinata HOM05D005964 ORTHO05D007242 4.7e-65 252.3 294 47.3
CARHR226010 Cardamine hirsuta HOM05D005964 ORTHO05D007242 4.7e-65 252.3 289 48.4
BolC7t45529H Brassica oleracea HOM05D005964 ORTHO05D007242 1.1e-64 251.1 307 46.3
AUR62018605 Chenopodium quinoa HOM05D005964 ORTHO05D007242 1.1e-64 251.1 228 57.5
AL7G34950 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 1.8e-64 250.4 297 46.8
Carub.0007s2201 Capsella rubella HOM05D005964 ORTHO05D007242 2.3e-64 250.0 286 47.2
Hma1.2p1_0544F.1_g175510 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 5.2e-64 248.8 199 62.3
THA.LOC104811073 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 6.8e-64 248.4 293 48.5
C01p13130 Brassica napus HOM05D005964 ORTHO05D007242 1.7e-62 243.8 306 45.4
BolC1t01286H Brassica oleracea HOM05D005964 ORTHO05D007242 1.7e-62 243.8 306 45.4
Aa31LG6G1830 Aethionema arabicum HOM05D005964 ORTHO05D007242 2.2e-62 243.4 306 44.8
Aqoxy7G00888 Aquilegia oxysepala HOM05D005964 ORTHO05D007242 2.2e-62 243.4 268 52.6
A01p11100 Brassica napus HOM05D005964 ORTHO05D007242 2.2e-62 243.4 297 46.1
BraA01t01056Z Brassica rapa HOM05D005964 ORTHO05D007242 2.2e-62 243.4 297 46.1
HanXRQChr03g0081171 Helianthus annuus HOM05D005964 ORTHO05D007242 4.9e-62 242.3 295 47.1
Os04g0600400 Oryza sativa ssp. japonica HOM05D005964 ORTHO05D007242 1.1e-61 241.1 296 47.0
Nn1g02066 Nelumbo nucifera HOM05D005964 ORTHO05D007242 1.4e-61 240.7 209 59.3
MBI04_g27277_MAGBIO Magnolia biondii HOM05D005964 ORTHO05D007242 4.1e-61 239.2 262 51.1
vmacro14234 Vaccinium macrocarpon HOM05D005964 ORTHO05D007242 5.4e-61 238.8 316 42.4
Hund11143 Selenicereus undatus HOM05D005964 ORTHO05D007242 1.0e-59 234.6 393 38.2
BraA03t14264Z Brassica rapa HOM05D005964 ORTHO05D007242 2.3e-59 233.4 316 44.0
AUR62007382 Chenopodium quinoa HOM05D005964 ORTHO05D007242 3.9e-59 232.6 216 55.6
FAN18G4345 Fragaria x ananassa HOM05D005964 ORTHO05D007242 5.1e-59 232.3 177 65.0
QL12p001050 Quercus lobata HOM05D005964 ORTHO05D007242 1.1e-58 231.1 201 63.2
THA.LOC104806194 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 5.2e-56 222.2 235 51.9
Zm00001eb071860 Zea mays HOM05D005964 ORTHO05D007242 6.8e-56 221.9 277 46.2
PSO717G0069 Papaver somniferum HOM05D005964 ORTHO05D007242 8.9e-56 221.5 241 49.4
PSO675G7054 Papaver somniferum HOM05D005964 ORTHO05D007242 1.2e-55 221.1 279 45.5
Sabra01G0101200 Salix brachista HOM05D005964 ORTHO05D007242 3.4e-55 219.5 235 52.3
ClCG10G001030 Citrullus lanatus HOM05D005964 ORTHO05D007242 9.9e-55 218.0 291 44.7
Phvul.002G128700 Phaseolus vulgaris HOM05D005964 ORTHO05D007242 9.9e-55 218.0 204 56.4
arahy.Tifrunner.gnm1.ann1.MDU2JP Arachis hypogaea HOM05D005964 ORTHO05D007242 1.2e-49 201.1 271 43.9
ATR0829G145 Amborella trichopoda HOM05D005964 ORTHO05D007242 4.4e-47 192.6 174 56.3
C07p50270 Brassica napus HOM05D005964 ORTHO05D007242 1.4e-45 187.6 294 40.5
A03p51750 Brassica napus HOM05D005964 ORTHO05D007242 2.1e-44 183.7 293 39.9
CDE12G0810 Ceratophyllum demersum HOM05D005964 ORTHO05D007242 2.1e-44 183.7 242 43.4
SEGI_32375 Sequoiadendron giganteum HOM05D005964 ORTHO05D007242 4.3e-42 176.0 172 52.9
Ah.12g055850 Amaranthus hybridus HOM05D005964 ORTHO05D007242 7.6e-39 165.2 186 47.8
HPP92_021116 Vanilla planifolia HOM05D005964 ORTHO05D007242 1.7e-35 154.1 191 44.0
PSO717G0022 Papaver somniferum HOM05D005964 ORTHO05D007242 7.4e-34 148.7 148 54.1
Cpa.g.sc90.42 Carica papaya HOM05D005964 ORTHO05D007242 4.0e-24 116.3 82 63.4
Mapoly0153s0025 Marchantia polymorpha HOM05D005964 ORTHO05D007242 2.2e-22 110.5 245 35.1
Pp3c6_11480 Physcomitrium patens HOM05D005964 ORTHO05D007242 4.3e-18 96.3 294 26.5
AagrBONN_evm.TU.Sc2ySwM_344.1651 Anthoceros agrestis HOM05D005964 ORTHO05D007242 1.4e-13 81.3 117 40.2
Cpa.g.sc90.41 Carica papaya HOM05D005964 ORTHO05D007242 1.6e-12 77.8 44 79.5
Haze_05991 Corylus avellana HOM05D005964 ORTHO05D007242 7.9e-12 75.5 162 37.7
AL8G21390 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 7.4e-10 68.9 128 33.6
Haze_08067 Corylus avellana HOM05D005964 ORTHO05D007242 1.3e-09 68.2 105 37.1
Oeu042210.1 Olea europaea HOM05D005964 ORTHO05D007242 2.2e-09 67.4 50 58.0
CBR_g24057 Chara braunii HOM05D005964 ORTHO05D007242 2.8e-09 67.0 266 27.4
Cpa.g.c47778 Carica papaya HOM05D005964 ORTHO05D007242 1.5e-07 61.2 40 60.0


User provided reference genes

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