Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 0.0e+00 1374.8 711 100.0
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 0.0e+00 1360.9 711 99.3
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 0.0e+00 1295.4 704 93.9
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1217.6 702 86.9
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 0.0e+00 1217.6 707 87.1
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 0.0e+00 1216.4 700 87.0
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 0.0e+00 1212.6 707 87.0
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1210.7 702 86.5
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 0.0e+00 1208.7 701 86.6
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 0.0e+00 1202.2 713 87.9
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 0.0e+00 1195.6 699 86.4
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 0.0e+00 1194.9 704 85.5
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 0.0e+00 1194.5 703 84.5
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 0.0e+00 1192.9 709 84.8
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 0.0e+00 1192.2 699 84.5
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 0.0e+00 1190.6 697 86.2
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 0.0e+00 1189.9 701 84.9
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 0.0e+00 1186.8 703 84.4
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 0.0e+00 1186.4 710 83.7
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 0.0e+00 1186.0 699 85.4
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 0.0e+00 1185.2 703 84.9
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 0.0e+00 1184.5 701 84.3
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1183.3 701 84.9
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 0.0e+00 1182.2 702 85.3
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 0.0e+00 1180.6 699 85.7
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1179.5 707 84.2
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 0.0e+00 1178.3 701 84.5
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1178.3 700 84.7
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1177.5 701 85.2
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 0.0e+00 1175.2 699 83.5
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1175.2 702 83.2
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 0.0e+00 1175.2 710 83.8
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 0.0e+00 1174.5 700 83.3
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 0.0e+00 1173.3 707 84.6
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 0.0e+00 1173.3 700 83.6
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 0.0e+00 1171.0 702 84.6
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1171.0 698 84.7
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 0.0e+00 1169.1 703 83.6
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 0.0e+00 1167.5 696 84.2
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 0.0e+00 1165.2 700 84.6
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 0.0e+00 1163.3 707 82.3
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 0.0e+00 1161.0 702 83.0
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 0.0e+00 1160.6 702 82.6
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 0.0e+00 1160.2 725 82.1
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1158.3 708 81.9
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1157.1 701 83.5
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 0.0e+00 1151.0 692 83.4
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1150.6 701 82.7
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 0.0e+00 1147.9 700 82.9
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1139.8 702 82.9
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 0.0e+00 1136.7 683 83.9
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 0.0e+00 1135.2 693 81.5
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 0.0e+00 1127.5 704 82.4
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 0.0e+00 1127.1 698 82.7
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 0.0e+00 1127.1 698 82.7
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 0.0e+00 1126.3 698 79.8
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 0.0e+00 1125.9 698 79.5
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1125.5 696 82.5
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 0.0e+00 1121.3 707 82.0
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 0.0e+00 1120.1 702 80.1
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 0.0e+00 1116.3 693 80.4
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1115.1 703 79.4
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 0.0e+00 1115.1 703 80.8
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 0.0e+00 1114.8 702 79.6
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 0.0e+00 1114.4 701 79.5
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 0.0e+00 1114.4 692 82.4
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 0.0e+00 1112.4 701 79.3
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1112.1 701 79.2
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1111.3 701 79.0
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1111.3 701 79.3
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 0.0e+00 1107.4 700 80.4
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1107.0 731 78.2
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 0.0e+00 1106.7 699 79.4
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 0.0e+00 1104.0 705 78.4
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 0.0e+00 1103.6 697 78.3
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 0.0e+00 1103.6 700 77.7
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 0.0e+00 1103.2 699 78.3
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 0.0e+00 1102.8 702 78.6
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1099.3 704 78.0
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 0.0e+00 1097.4 704 77.8
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 0.0e+00 1092.8 656 84.1
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1091.6 704 77.6
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1091.6 704 77.6
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 0.0e+00 1091.6 704 77.6
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 0.0e+00 1090.5 693 78.6
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 0.0e+00 1088.9 700 80.0
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1081.2 703 77.4
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 0.0e+00 1078.2 721 77.8
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 4.8e-310 1067.4 616 86.0
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 6.9e-309 1063.5 653 83.3
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 1.1e-306 1056.2 614 87.1
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 2.3e-304 1048.5 702 75.6
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 6.7e-304 1047.0 690 79.1
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 4.4e-303 1044.3 655 79.2
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 9.7e-303 1043.1 702 78.2
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 1.7e-302 1042.3 713 74.5
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 5.3e-301 1037.3 709 77.0
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 7.7e-300 1033.5 698 74.1
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 2.9e-299 1031.6 685 75.0
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 8.5e-299 1030.0 705 73.8
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.1e-297 1025.4 705 73.3
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 6.3e-294 1013.8 541 95.6
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 1.3e-291 1006.1 706 73.9
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 1.8e-285 985.7 636 76.7
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 2.2e-283 978.8 701 72.0
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 8.5e-283 976.9 583 85.1
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.2e-281 973.0 729 71.2
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 1.0e-275 953.4 572 84.4
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 2.0e-260 902.5 698 70.6
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 2.1e-257 892.5 725 67.3
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 5.2e-256 887.9 696 67.1
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 1.5e-247 859.8 450 99.1
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 8.9e-240 833.9 529 79.0
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 7.6e-239 830.9 534 79.4
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 6.4e-238 827.8 566 74.0
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 8.7e-211 737.6 691 55.1
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 2.2e-206 723.0 613 63.9
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.2e-199 700.7 552 69.9
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 7.2e-197 691.4 636 55.3
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 1.2e-191 674.1 517 71.4
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 4.5e-191 672.2 402 85.1
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.7e-190 670.2 392 86.5
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 7.7e-175 618.2 625 51.2
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 5.0e-166 589.0 638 48.6
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 9.4e-165 584.7 639 48.4
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 9.5e-157 558.1 395 75.9
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 8.6e-142 508.4 637 41.8
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 2.1e-140 503.8 633 42.5
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.2e-135 488.0 640 42.0
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 1.2e-135 488.0 711 42.9
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.6e-132 477.6 624 42.9
SEGI_18257 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 3.5e-127 459.9 307 73.9
PGSC0003DMG402007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 6.4e-121 439.1 224 98.7
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.8e-107 394.4 399 53.1
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 1.8e-107 394.4 245 81.2
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 9.3e-104 382.1 399 57.9
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.0e-73 282.3 224 67.4
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 6.5e-57 226.5 125 86.4
CSS0006727 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.6e-55 221.9 171 71.9
Mapoly1910s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 5.2e-38 163.7 144 53.5
CSS0011428 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.2e-31 142.5 78 88.5
AagrBONN_evm.TU.Sc2ySwM_117.1738 Anthoceros agrestis HOM05D004914 ORTHO05D038447 2.3e-25 121.7 101 61.4
arahy.Tifrunner.gnm1.ann1.N8W4DB Arachis hypogaea HOM05D004914 ORTHO05D000389 5.0e-25 120.6 63 84.1
arahy.Tifrunner.gnm1.ann1.3D8EL1 Arachis hypogaea HOM05D004914 ORTHO05D000389 3.6e-23 114.4 59 86.4
CBR_g12519 Chara braunii HOM05D004914 ORTHO05D006512 1.4e-22 112.5 92 59.8
CSS0022246 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112219 2.5e-16 91.7 57 73.7
Os02g0689066 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D038447 2.1e-15 88.6 56 75.0
CSS0001366 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112087 6.0e-10 70.5 63 52.4
CSS0009431 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D113607 6.0e-10 70.5 63 52.4
CSS0040812 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D111646 8.6e-09 66.6 57 56.1
CSS0022754 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D109566 4.3e-08 64.3 57 56.1
arahy.Tifrunner.gnm1.ann1.D5QS8R Arachis hypogaea HOM05D000487 ORTHO05D000389 2.4e-06 58.5 30 73.3


User provided reference genes

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