Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g075440.4 Solanum lycopersicum HOM05D001176 ORTHO05D007019 0.0e+00 1354.7 692 100.0
Sopen08g024070 Solanum pennellii HOM05D001176 ORTHO05D007019 0.0e+00 1352.0 692 99.9
CAN.G930.8 Capsicum annuum HOM05D001176 ORTHO05D007019 0.0e+00 1290.8 692 94.9
Nitab4.5_0000030g0410 Nicotiana tabacum HOM05D001176 ORTHO05D007019 0.0e+00 1274.2 692 93.2
Peaxi162Scf00193g00811 Petunia axillaris HOM05D001176 ORTHO05D007019 0.0e+00 1215.3 692 89.6
Nitab4.5_0001333g0050 Nicotiana tabacum HOM05D001176 ORTHO05D007019 0.0e+00 1204.9 692 89.3
CSS0027781 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 0.0e+00 1114.0 693 82.1
Cc08_g05630 Coffea canephora HOM05D001176 ORTHO05D007019 0.0e+00 1105.5 692 80.8
Duzib205G1840 Durio zibethinus HOM05D001176 ORTHO05D007019 0.0e+00 1088.9 693 78.8
SalBow4G1488 Salvia bowleyana HOM05D001176 ORTHO05D007019 0.0e+00 1083.9 692 79.2
GSVIVG01013198001 Vitis vinifera HOM05D001176 ORTHO05D007019 0.0e+00 1083.6 693 79.2
MSTRG.25741 Avicennia marina HOM05D001176 ORTHO05D007019 0.0e+00 1081.6 692 79.3
Thecc.03G318700 Theobroma cacao HOM05D001176 ORTHO05D007019 0.0e+00 1078.5 693 78.2
Rhsim11G0036600 Rhododendron simsii HOM05D001176 ORTHO05D007019 0.0e+00 1075.1 741 75.6
Gorai.004G178200 Gossypium raimondii HOM05D001176 ORTHO05D007019 4.7e-312 1073.5 694 78.2
COL.COLO4_11286 Corchorus olitorius HOM05D001176 ORTHO05D007019 9.5e-312 1072.8 693 77.9
Gohir.D08G170800 Gossypium hirsutum HOM05D001176 ORTHO05D007019 9.5e-312 1072.8 694 78.2
Gohir.A08G149700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 1.2e-310 1069.3 691 78.1
TAR375G1104 Trochodendron aralioides HOM05D001176 ORTHO05D007019 1.8e-309 1065.4 696 78.3
Lj9C202G6 Lonicera japonica HOM05D001176 ORTHO05D007019 2.3e-309 1065.1 693 78.9
DCAR_001483 Daucus carota HOM05D001176 ORTHO05D007019 5.2e-309 1063.9 691 78.7
Oeu039635.2 Olea europaea HOM05D001176 ORTHO05D007019 5.2e-309 1063.9 734 75.5
HanXRQChr03g0068151 Helianthus annuus HOM05D001176 ORTHO05D007019 1.2e-308 1062.8 692 78.6
Lj2g0027044 Lotus japonicus HOM05D001176 ORTHO05D007019 1.2e-308 1062.8 691 78.1
Atru.chr8.2633 Acer truncatum HOM05D001176 ORTHO05D007019 4.4e-308 1060.8 694 77.7
Manes.15G189800 Manihot esculenta HOM05D001176 ORTHO05D007019 7.5e-308 1060.1 691 77.9
CiPaw.11G075700 Carya illinoinensis HOM05D001176 ORTHO05D007019 1.7e-307 1058.9 693 77.9
Medtr5g025410 Medicago truncatula HOM05D001176 ORTHO05D007019 2.2e-307 1058.5 691 78.0
ECA240G2428 Erigeron canadensis HOM05D001176 ORTHO05D007019 3.7e-307 1057.7 691 77.6
Lalb_Chr09g0324961 Lupinus albus HOM05D001176 ORTHO05D007019 3.7e-307 1057.7 691 77.7
PGR031G2625 Punica granatum HOM05D001176 ORTHO05D007019 4.8e-307 1057.4 696 77.0
Ciclev10011152m.g Citrus clementina HOM05D001176 ORTHO05D007019 2.4e-306 1055.0 693 78.1
Lalb_Chr16g0380331 Lupinus albus HOM05D001176 ORTHO05D007019 3.1e-306 1054.7 695 77.3
Psat2g146720 Pisum sativum HOM05D001176 ORTHO05D007019 4.1e-306 1054.3 691 77.9
Prupe.1G077200 Prunus persica HOM05D001176 ORTHO05D007019 7.0e-306 1053.5 691 78.0
AUR62017508 Chenopodium quinoa HOM05D001176 ORTHO05D007019 9.1e-306 1053.1 691 76.7
Potri.004G236600 Populus trichocarpa HOM05D001176 ORTHO05D007019 7.7e-305 1050.0 693 77.1
Glyma.11G090100 Glycine max HOM05D001176 ORTHO05D007019 1.0e-304 1049.7 691 77.1
RcHm_v2.0_Chr6g0304421 Rosa chinensis HOM05D001176 ORTHO05D007019 1.0e-304 1049.7 690 77.7
Phvul.002G121100 Phaseolus vulgaris HOM05D001176 ORTHO05D007019 1.7e-304 1048.9 691 77.7
Eucgr.D02557 Eucalyptus grandis HOM05D001176 ORTHO05D007019 3.8e-304 1047.7 691 76.6
Migut.A00530 Erythranthe guttata HOM05D001176 ORTHO05D007019 3.2e-303 1044.6 692 77.0
TWI79G0428 Tripterygium wilfordii HOM05D001176 ORTHO05D007019 1.0e-301 1039.6 694 77.5
Sc21g0000770 Simmondsia chinensis HOM05D001176 ORTHO05D007019 2.3e-301 1038.5 691 76.6
EL10Ac5g11241 Beta vulgaris HOM05D001176 ORTHO05D007019 8.8e-301 1036.6 691 75.4
FAN27G0701 Fragaria x ananassa HOM05D001176 ORTHO05D007019 8.8e-301 1036.6 690 76.8
MBI04_g37458_MAGBIO Magnolia biondii HOM05D001176 ORTHO05D007019 1.5e-300 1035.8 695 75.0
Aqoxy7G00899 Aquilegia oxysepala HOM05D001176 ORTHO05D007019 2.2e-299 1031.9 696 76.3
VMungo1215G1610 Vigna mungo HOM05D001176 ORTHO05D007019 3.7e-299 1031.2 690 76.5
Haze_02517 Corylus avellana HOM05D001176 ORTHO05D007019 1.1e-298 1029.6 728 73.5
FAN20G0920 Fragaria x ananassa HOM05D001176 ORTHO05D007019 1.4e-298 1029.2 690 76.2
MELO3C010519.2 Cucumis melo HOM05D001176 ORTHO05D007019 4.1e-298 1027.7 692 76.3
CsaV3_4G027950 Cucumis sativus L. HOM05D001176 ORTHO05D007019 5.4e-298 1027.3 691 76.0
Ca_25034_v3 Cicer arietinum L. HOM05D001176 ORTHO05D007019 3.5e-297 1024.6 674 77.2
Lsat_1_v5_gn_9_124460 Lactuca sativa HOM05D001176 ORTHO05D007019 5.9e-297 1023.8 708 75.1
Sed0008250 Sechium edule HOM05D001176 ORTHO05D007019 5.9e-297 1023.8 691 75.4
Sabra01G0180800 Salix brachista HOM05D001176 ORTHO05D007019 3.6e-294 1014.6 693 75.3
SGA_v2.0_scaffold96G29093 Striga asiatica HOM05D001176 ORTHO05D007019 3.6e-294 1014.6 798 67.3
Ah.05g167880 Amaranthus hybridus HOM05D001176 ORTHO05D007019 5.2e-293 1010.7 719 71.2
Gohir.D08G170700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 2.0e-292 1008.8 694 74.5
ClCG11G016030 Citrullus lanatus HOM05D001176 ORTHO05D007019 7.5e-292 1006.9 691 74.7
Nn1g09379 Nelumbo nucifera HOM05D001176 ORTHO05D007019 9.8e-292 1006.5 696 74.1
TPR.G8989 Trifolium pratense HOM05D001176 ORTHO05D007019 1.1e-290 1003.0 649 78.1
THA.LOC104798522 Tarenaya hassleriana HOM05D001176 ORTHO05D007019 2.9e-288 995.0 691 73.8
Carub.0001s3008 Capsella rubella HOM05D001176 ORTHO05D007019 1.4e-285 986.1 692 72.8
PGSC0003DMG400001956 Solanum tuberosum HOM05D001176 ORTHO05D007019 3.1e-285 984.9 510 97.3
AT1G31780 Arabidopsis thaliana HOM05D001176 ORTHO05D007019 4.0e-285 984.6 692 73.0
BcaB07g32825 Brassica carinata HOM05D001176 ORTHO05D007019 5.2e-285 984.2 693 72.9
AL1G45850 Arabidopsis lyrata HOM05D001176 ORTHO05D007019 1.2e-284 983.0 692 72.7
PSO732G0580 Papaver somniferum HOM05D001176 ORTHO05D007019 1.3e-283 979.5 699 72.0
PSO675G7478 Papaver somniferum HOM05D001176 ORTHO05D007019 3.7e-283 978.0 699 72.5
A09p34570 Brassica napus HOM05D001176 ORTHO05D007019 6.4e-283 977.2 692 72.4
BraA09t38996Z Brassica rapa HOM05D001176 ORTHO05D007019 8.3e-283 976.9 692 72.4
BcaC05g27192 Brassica carinata HOM05D001176 ORTHO05D007019 1.4e-282 976.1 692 72.4
BolC5t31821H Brassica oleracea HOM05D001176 ORTHO05D007019 1.4e-282 976.1 692 72.4
ATR0665G266 Amborella trichopoda HOM05D001176 ORTHO05D007019 2.4e-282 975.3 697 72.6
Sp1g27470 Schrenkiella parvula HOM05D001176 ORTHO05D007019 7.0e-282 973.8 692 72.4
CARHR031080 Cardamine hirsuta HOM05D001176 ORTHO05D007019 1.6e-281 972.6 692 72.4
Aa31LG2G14290 Aethionema arabicum HOM05D001176 ORTHO05D007019 2.0e-281 972.2 691 72.5
Thhalv10006980m.g Eutrema salsugineum HOM05D001176 ORTHO05D007019 2.0e-281 972.2 692 72.0
Cpa.g.sc90.31 Carica papaya HOM05D001176 ORTHO05D007019 2.5e-279 965.3 693 72.0
unitig_748.g7392 Utricularia gibba HOM05D001176 ORTHO05D007019 2.5e-279 965.3 692 71.5
C05p30980 Brassica napus HOM05D001176 ORTHO05D007019 5.6e-279 964.1 692 71.7
SEGI_32977 Sequoiadendron giganteum HOM05D001176 ORTHO05D007019 6.6e-272 940.6 702 68.8
CDE04G2738 Ceratophyllum demersum HOM05D001176 ORTHO05D007019 2.1e-270 935.6 695 69.2
Actinidia01255 Actinidia chinensis HOM05D001176 ORTHO05D007019 1.9e-263 912.5 550 83.6
AUR62015049 Chenopodium quinoa HOM05D001176 ORTHO05D007019 4.2e-258 894.8 690 67.2
QL12p003889 Quercus lobata HOM05D001176 ORTHO05D007019 1.3e-254 883.2 1198 45.9
Zm00001eb009310 Zea mays HOM05D001176 ORTHO05D007019 4.8e-254 881.3 690 65.9
Oeu014108.2 Olea europaea HOM05D001176 ORTHO05D007019 3.4e-252 875.2 768 63.2
Mapoly0009s0222 Marchantia polymorpha HOM05D001176 ORTHO05D007019 2.1e-246 855.9 717 62.5
Pp3c2_23210 Physcomitrium patens HOM05D001176 ORTHO05D007019 3.8e-243 845.1 718 59.5
HPP92_018761 Vanilla planifolia HOM05D001176 ORTHO05D007019 5.5e-234 814.7 568 73.4
FvH4_2g37280 Fragaria vesca HOM05D001176 ORTHO05D007019 1.1e-229 800.4 536 76.9
FAN15G1703 Fragaria x ananassa HOM05D001176 ORTHO05D007019 5.1e-216 755.0 468 80.8
AagrBONN_evm.TU.Sc2ySwM_362.2951 Anthoceros agrestis HOM05D001176 ORTHO05D007019 2.6e-212 742.7 642 59.2
MD13G1243800 Malus domestica HOM05D001176 ORTHO05D007019 1.4e-210 736.9 520 72.1
SMO339G0033 Selaginella moellendorffii HOM05D001176 ORTHO05D007019 6.3e-206 721.5 695 56.8
MD13G1244000 Malus domestica HOM05D001176 ORTHO05D007019 8.5e-187 657.9 413 80.1
Cre13.g587750 Chlamydomonas reinhardtii HOM05D001176 ORTHO05D007019 6.9e-144 515.4 711 42.3
PRCOL_00001869 Prasinoderma coloniale HOM05D001176 ORTHO05D007019 6.9e-144 515.4 713 42.6
MCO03G158 Micromonas commoda HOM05D001176 ORTHO05D007019 9.6e-138 495.0 705 40.6
Actinidia32787 Actinidia chinensis HOM05D001176 ORTHO05D007019 4.6e-132 476.1 692 44.7
CSS0004945 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 5.3e-128 462.6 692 44.9
Dinv41808 Davidia involucrata HOM05D001176 ORTHO05D007019 3.9e-123 446.4 265 85.3
CBR_g61503 Chara braunii HOM05D001176 ORTHO05D007019 8.4e-118 428.7 479 50.3
Dinv41809 Davidia involucrata HOM05D001176 ORTHO05D007019 3.0e-115 420.2 274 79.6
CSS0012136 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 9.6e-114 415.2 659 42.8
CSS0030107 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 1.6e-105 387.9 232 84.1
Cc07_g20650 Coffea canephora HOM05D001176 ORTHO05D007019 1.8e-104 384.4 436 53.7
MD13G1243900 Malus domestica HOM05D001176 ORTHO05D007019 9.1e-88 328.9 249 67.9
CDE07G2068 Ceratophyllum demersum HOM05D004834 ORTHO05D006247 2.6e-82 310.8 681 34.2
vmacro00085 Vaccinium macrocarpon HOM05D001176 ORTHO05D007019 1.1e-77 295.4 294 57.8
FAN15G2248 Fragaria x ananassa HOM05D001176 ORTHO05D007019 2.1e-76 291.2 224 67.4
Hund16023 Selenicereus undatus HOM05D001176 ORTHO05D007019 1.3e-65 255.4 199 68.8
CBR_g61501 Chara braunii HOM05D001176 ORTHO05D007019 1.2e-63 248.8 167 70.1
arahy.Tifrunner.gnm1.ann1.7XHH75 Arachis hypogaea HOM05D001176 ORTHO05D007019 1.3e-46 192.2 136 74.3
arahy.Tifrunner.gnm1.ann1.V0K3WG Arachis hypogaea HOM05D001176 ORTHO05D007019 1.3e-46 192.2 136 74.3
Glyma.01G154501 Glycine max HOM05D001176 ORTHO05D007019 3.3e-37 161.0 101 80.2
Glyma.01G154450 Glycine max HOM05D001176 ORTHO05D007019 5.2e-35 153.7 118 70.3
Os03g0225600 Oryza sativa ssp. japonica HOM05D001176 ORTHO05D007019 1.9e-24 118.6 93 60.2
HPP92_018762 Vanilla planifolia HOM05D001176 ORTHO05D007019 1.7e-22 112.1 84 61.9
CsaV3_4G027980 Cucumis sativus L. HOM05D001176 ORTHO05D007019 7.3e-21 106.7 217 36.4
Glyma.01G154551 Glycine max HOM05D001176 ORTHO05D214389 4.9e-17 94.0 85 58.8
TPR.G11479 Trifolium pratense HOM05D001176 ORTHO05D007019 2.1e-15 88.6 64 71.9
Zm00001eb399610 Zea mays HOM05D001176 ORTHO05D007019 5.3e-11 73.9 154 33.8


User provided reference genes

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