Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g075420.4 Solanum lycopersicum HOM05D006577 ORTHO05D008428 5.8e-196 688.3 419 100.0
Sopen08g024050 Solanum pennellii HOM05D006577 ORTHO05D008428 1.1e-191 674.1 419 95.7
CAN.G1026.7 Capsicum annuum HOM05D006577 ORTHO05D008428 1.7e-179 633.6 419 91.9
Nitab4.5_0007095g0010 Nicotiana tabacum HOM05D006577 ORTHO05D008428 4.1e-165 585.9 337 89.9
Peaxi162Scf00193g00730 Petunia axillaris HOM05D006577 ORTHO05D008428 1.8e-157 560.5 391 83.1
Cc08_g05650 Coffea canephora HOM05D006577 ORTHO05D008428 1.3e-139 501.1 310 80.6
CiPaw.11G075200 Carya illinoinensis HOM05D006577 ORTHO05D008428 2.5e-138 496.9 337 77.7
Actinidia32789 Actinidia chinensis HOM05D006577 ORTHO05D008428 2.3e-136 490.3 339 73.7
CSS0014058 Camellia sinensis var. sinensis HOM05D006577 ORTHO05D008428 3.0e-136 490.0 342 73.1
Eucgr.D02560 Eucalyptus grandis HOM05D006577 ORTHO05D008428 5.7e-135 485.7 315 77.8
Thecc.03G318900 Theobroma cacao HOM05D006577 ORTHO05D008428 3.7e-134 483.0 314 76.8
GSVIVG01036870001 Vitis vinifera HOM05D006577 ORTHO05D008428 1.1e-133 481.5 311 78.8
Lsat_1_v5_gn_6_17281 Lactuca sativa HOM05D006577 ORTHO05D008428 1.8e-133 480.7 308 77.9
PGR042G0863 Punica granatum HOM05D006577 ORTHO05D008428 2.4e-133 480.3 312 77.6
DCAR_030906 Daucus carota HOM05D006577 ORTHO05D008428 1.6e-132 477.6 339 73.7
Cfa012291 Carpinus fangiana HOM05D000435 ORTHO05D000430 2.0e-132 477.2 312 78.8
Oeu046783.1 Olea europaea HOM05D006577 ORTHO05D008428 2.0e-132 477.2 333 73.0
COL.COLO4_11282 Corchorus olitorius HOM05D006577 ORTHO05D008428 2.7e-132 476.9 332 74.1
Dinv41806 Davidia involucrata HOM05D006577 ORTHO05D008428 3.5e-132 476.5 316 76.9
Prupe.1G353400 Prunus persica HOM05D006577 ORTHO05D008428 5.9e-132 475.7 334 73.1
TPR.G29075 Trifolium pratense HOM05D006577 ORTHO05D008428 1.3e-131 474.6 311 76.8
Gohir.A08G149500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 1.7e-131 474.2 337 71.8
MSTRG.1757 Avicennia marina HOM05D006577 ORTHO05D008428 2.3e-131 473.8 307 77.5
ECA233G0973 Erigeron canadensis HOM05D006577 ORTHO05D008428 2.3e-131 473.8 307 77.2
Manes.17G000100 Manihot esculenta HOM05D006577 ORTHO05D008428 2.9e-131 473.4 332 74.1
Gohir.D08G170500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 5.0e-131 472.6 337 71.5
FvH4_2g37380 Fragaria vesca HOM05D006577 ORTHO05D008428 1.1e-130 471.5 308 77.9
Gorai.004G178000 Gossypium raimondii HOM05D006577 ORTHO05D008428 1.1e-130 471.5 337 71.2
MELO3C010522.2 Cucumis melo HOM05D006577 ORTHO05D008428 1.9e-130 470.7 313 77.3
arahy.Tifrunner.gnm1.ann1.0U4NMV Arachis hypogaea HOM05D006577 ORTHO05D008428 2.5e-130 470.3 309 73.8
arahy.Tifrunner.gnm1.ann1.Y0J304 Arachis hypogaea HOM05D006577 ORTHO05D008428 2.5e-130 470.3 309 73.8
Psat1g131640 Pisum sativum HOM05D006577 ORTHO05D008428 4.3e-130 469.5 311 76.8
CsaV3_4G027910 Cucumis sativus L. HOM05D006577 ORTHO05D008428 7.3e-130 468.8 313 77.0
MD08G1001400 Malus domestica HOM05D006577 ORTHO05D008428 9.5e-130 468.4 338 73.7
TAR629G1131 Trochodendron aralioides HOM05D006577 ORTHO05D008428 2.1e-129 467.2 308 77.9
CANSAT35G0698 Cannabis sativa HOM05D006577 ORTHO05D008428 4.7e-129 466.1 308 76.6
Cpa.g.sc90.36 Carica papaya HOM05D006577 ORTHO05D008428 4.7e-129 466.1 314 74.5
AUR62030109 Chenopodium quinoa HOM05D006577 ORTHO05D008428 8.0e-129 465.3 308 75.0
Medtr2g040410 Medicago truncatula HOM05D006577 ORTHO05D008428 1.4e-128 464.5 310 74.5
EL10Ac8g19602 Beta vulgaris HOM05D006577 ORTHO05D008428 2.3e-128 463.8 307 74.9
Nn7g37388 Nelumbo nucifera HOM05D006577 ORTHO05D008428 4.0e-128 463.0 310 76.5
RcHm_v2.0_Chr6g0304321 Rosa chinensis HOM05D006577 ORTHO05D008428 5.2e-128 462.6 310 77.7
Ca_13135_v3 Cicer arietinum L. HOM05D006577 ORTHO05D008428 6.8e-128 462.2 310 75.2
Migut.E01373 Erythranthe guttata HOM05D006577 ORTHO05D008428 6.8e-128 462.2 309 75.4
vmacro00091 Vaccinium macrocarpon HOM05D006577 ORTHO05D008428 8.9e-128 461.8 309 74.8
TWI73G0063 Tripterygium wilfordii HOM05D006577 ORTHO05D008428 1.5e-127 461.1 305 76.7
Lalb_Chr16g0380351 Lupinus albus HOM05D006577 ORTHO05D008428 3.4e-127 459.9 317 72.9
Rhsim11G0036700 Rhododendron simsii HOM05D006577 ORTHO05D008428 3.4e-127 459.9 311 74.3
HanXRQChr07g0198411 Helianthus annuus HOM05D006577 ORTHO05D008428 4.4e-127 459.5 307 76.2
Oeu015543.2 Olea europaea HOM05D006577 ORTHO05D008428 5.8e-127 459.1 339 69.6
VMungo1215G3406 Vigna mungo HOM05D006577 ORTHO05D008428 5.8e-127 459.1 309 73.8
Glyma.01G154300 Glycine max HOM05D006577 ORTHO05D008428 7.5e-127 458.8 310 73.9
Haze_08434 Corylus avellana HOM05D006577 ORTHO05D008428 2.2e-126 457.2 331 73.1
Potri.004G236300 Populus trichocarpa HOM05D006577 ORTHO05D008428 3.7e-126 456.4 312 74.0
Lj2g0006155 Lotus japonicus HOM05D006577 ORTHO05D008428 8.3e-126 455.3 313 72.8
Ciclev10011516m.g Citrus clementina HOM05D006577 ORTHO05D008428 2.4e-125 453.8 308 73.7
Glyma.11G090300 Glycine max HOM05D006577 ORTHO05D008428 3.2e-125 453.4 331 69.2
Phvul.002G121300 Phaseolus vulgaris HOM05D006577 ORTHO05D008428 7.0e-125 452.2 307 72.6
Sp7g17900 Schrenkiella parvula HOM05D006577 ORTHO05D008428 7.0e-125 452.2 324 71.6
A01p11160 Brassica napus HOM05D006577 ORTHO05D008428 1.6e-124 451.1 319 72.7
BraA01t01062Z Brassica rapa HOM05D006577 ORTHO05D008428 1.6e-124 451.1 319 72.7
C01p13200 Brassica napus HOM05D006577 ORTHO05D008428 2.0e-124 450.7 318 73.0
Carub.0007s2195 Capsella rubella HOM05D006577 ORTHO05D008428 2.0e-124 450.7 318 72.0
CDE01G0285 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 2.7e-124 450.3 310 73.2
AT4G19190 Arabidopsis thaliana HOM05D006577 ORTHO05D008428 3.5e-124 449.9 318 72.3
ClCG11G016060 Citrullus lanatus HOM05D006577 ORTHO05D008428 4.6e-124 449.5 337 70.3
Thhalv10024821m.g Eutrema salsugineum HOM05D006577 ORTHO05D008428 7.8e-124 448.7 321 71.3
FAN21G2299 Fragaria x ananassa HOM05D006577 ORTHO05D008428 1.3e-123 448.0 312 75.0
Atru.chr8.2629 Acer truncatum HOM05D006577 ORTHO05D008428 2.3e-123 447.2 309 71.2
AL7G34890 Arabidopsis lyrata HOM05D006577 ORTHO05D008428 2.3e-123 447.2 319 72.1
CDE12G0431 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 3.9e-123 446.4 310 72.9
CARHR226070 Cardamine hirsuta HOM05D006577 ORTHO05D008428 5.0e-123 446.0 314 72.6
Aa31LG6G1900 Aethionema arabicum HOM05D006577 ORTHO05D008428 1.5e-122 444.5 315 71.4
BolC1t01294H Brassica oleracea HOM05D006577 ORTHO05D008428 1.9e-122 444.1 316 71.5
Aqoxy7G00896 Aquilegia oxysepala HOM05D006577 ORTHO05D008428 3.3e-122 443.4 307 72.0
unitig_37.g12910 Utricularia gibba HOM05D006577 ORTHO05D008428 2.1e-121 440.7 308 71.8
FAN27G1697 Fragaria x ananassa HOM05D006577 ORTHO05D008428 2.8e-121 440.3 340 70.3
FAN20G0322 Fragaria x ananassa HOM05D006577 ORTHO05D008428 1.8e-120 437.6 326 72.1
HPP92_002488 Vanilla planifolia HOM05D006577 ORTHO05D008428 2.3e-120 437.2 289 74.4
ATR0568G043 Amborella trichopoda HOM05D006577 ORTHO05D008428 2.0e-119 434.1 322 69.9
SEGI_36653 Sequoiadendron giganteum HOM05D006577 ORTHO05D008428 3.2e-117 426.8 313 69.6
PSO502G0007 Papaver somniferum HOM05D006577 ORTHO05D008428 2.1e-116 424.1 314 68.5
PSO675G5955 Papaver somniferum HOM05D006577 ORTHO05D008428 3.5e-116 423.3 308 69.2
BcaC09g51429 Brassica carinata HOM05D006577 ORTHO05D008428 4.6e-116 422.9 319 69.9
Sabra01G0180600 Salix brachista HOM05D006577 ORTHO05D008428 1.6e-113 414.5 379 60.7
THA.LOC104806196 Tarenaya hassleriana HOM05D006577 ORTHO05D008428 1.3e-110 404.8 316 68.0
Mapoly0190s0006 Marchantia polymorpha HOM05D006577 ORTHO05D008428 1.2e-105 388.3 301 65.8
Lj3A8G25 Lonicera japonica HOM05D006577 ORTHO05D008428 1.8e-104 384.4 255 76.9
QL12p004173 Quercus lobata HOM05D006577 ORTHO05D008428 5.2e-104 382.9 552 44.2
SGA_v2.0_scaffold144G35886 Striga asiatica HOM05D006577 ORTHO05D008428 9.9e-103 378.6 277 72.2
SMO172G0042 Selaginella moellendorffii HOM05D006577 ORTHO05D008428 1.7e-102 377.9 288 65.6
Pp3c3_31660 Physcomitrium patens HOM05D006577 ORTHO05D008428 3.8e-102 376.7 304 62.8
BcaC09g51430 Brassica carinata HOM05D006577 ORTHO05D008428 1.4e-101 374.8 267 73.0
Sc24g0001520 Simmondsia chinensis HOM05D006577 ORTHO05D008428 2.6e-87 327.4 223 72.6
CBR_g50314 Chara braunii HOM05D006577 ORTHO05D008428 1.3e-86 325.1 295 56.6
Sed0006082 Sechium edule HOM05D006577 ORTHO05D008428 1.8e-83 314.7 219 72.1
Zm00001eb227500 Zea mays HOM05D006577 ORTHO05D008428 6.2e-81 306.2 217 69.1
Ah.09g232390 Amaranthus hybridus HOM05D006577 ORTHO05D008428 3.7e-73 280.4 307 52.4
Lj3A28G25 Lonicera japonica HOM05D006577 ORTHO05D008428 7.1e-69 266.2 187 73.3
Hund17694 Selenicereus undatus HOM05D006577 ORTHO05D008428 8.2e-65 252.7 184 71.2
Hund17692 Selenicereus undatus HOM05D006577 ORTHO05D008428 1.3e-54 218.8 136 75.7
HanXRQChr07g0198421 Helianthus annuus HOM05D006577 ORTHO05D008428 2.6e-50 204.5 176 63.1
Lj9P453T24 Lonicera japonica HOM05D006577 ORTHO05D008428 7.4e-50 203.0 152 66.4
MCO15G109 Micromonas commoda HOM05D006577 ORTHO05D008428 3.9e-43 180.6 262 38.5
Nitab4.5_0000030g0480 Nicotiana tabacum HOM05D006577 ORTHO05D008428 1.7e-30 138.7 140 80.7
TPR.G30154 Trifolium pratense HOM05D006577 ORTHO05D008428 9.4e-29 132.9 187 48.7
CARHR123800 Cardamine hirsuta HOM05D006577 ORTHO05D008428 1.6e-28 132.1 69 85.5
Os06g0708900 Oryza sativa ssp. japonica HOM05D006577 ORTHO05D008428 1.4e-27 129.0 95 71.6
Zm00001eb395460 Zea mays HOM05D006577 ORTHO05D008428 6.8e-27 126.7 96 67.7
Zm00001eb339160 Zea mays HOM05D006577 ORTHO05D008428 2.0e-26 125.2 95 68.4
VMungo0251G3731 Vigna mungo HOM05D006577 ORTHO05D008428 5.7e-26 123.6 87 71.3
MD15G1000700 Malus domestica HOM05D006577 ORTHO05D008428 3.3e-21 107.8 115 58.3
FAN21G2282 Fragaria x ananassa HOM05D006577 ORTHO05D011051 4.0e-19 100.9 60 80.0
FAN21G2462 Fragaria x ananassa HOM05D006577 ORTHO05D011051 2.0e-18 98.6 60 78.3
AUR62042461 Chenopodium quinoa HOM05D006577 ORTHO05D008428 2.4e-16 91.7 53 77.4
FAN21G2626 Fragaria x ananassa HOM05D006577 ORTHO05D011051 7.0e-16 90.1 60 76.7
TPR.G13376 Trifolium pratense HOM05D006577 ORTHO05D008428 4.5e-15 87.4 67 70.1
Lj3A8T28 Lonicera japonica HOM05D006577 ORTHO05D008428 2.8e-12 78.2 48 75.0
Lj3C28T3 Lonicera japonica HOM05D006577 ORTHO05D008428 3.6e-12 77.8 48 75.0
Cre06.g280700 Chlamydomonas reinhardtii HOM05D006577 ORTHO05D008428 8.0e-12 76.6 107 37.4
FvH4_3g03932 Fragaria vesca HOM05D006577 ORTHO05D008428 8.0e-12 76.6 39 92.3
BcaB08g35318 Brassica carinata HOM05D006577 ORTHO05D008428 2.3e-11 75.1 57 63.2


User provided reference genes

Program Settings