Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g075390.4 Solanum lycopersicum HOM05D004228 ORTHO05D005137 0.0e+00 1563.1 784 100.0
Sopen08g024020 Solanum pennellii HOM05D004228 ORTHO05D005137 0.0e+00 1546.9 784 99.2
CAN.G930.1 Capsicum annuum HOM05D004228 ORTHO05D005137 0.0e+00 1449.9 784 92.5
Cc08_g05800 Coffea canephora HOM05D004228 ORTHO05D005137 0.0e+00 1260.4 779 79.3
RcHm_v2.0_Chr2g0132121 Rosa chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1258.8 772 80.3
Prupe.3G104700 Prunus persica HOM05D004228 ORTHO05D005137 0.0e+00 1255.7 782 80.4
FvH4_6g28160 Fragaria vesca HOM05D004228 ORTHO05D005137 0.0e+00 1254.2 772 80.6
MSTRG.13911 Avicennia marina HOM05D004228 ORTHO05D005137 0.0e+00 1248.8 771 79.9
CiPaw.02G164000 Carya illinoinensis HOM05D004228 ORTHO05D005137 0.0e+00 1244.6 772 79.3
Dinv21435 Davidia involucrata HOM05D004228 ORTHO05D005137 0.0e+00 1243.0 775 79.9
Peaxi162Scf00193g00726 Petunia axillaris HOM05D004228 ORTHO05D005137 0.0e+00 1243.0 735 86.0
CSS0026873 Camellia sinensis var. sinensis HOM05D004228 ORTHO05D005137 0.0e+00 1241.5 780 78.3
Potri.003G185600 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1241.5 768 79.4
Potri.003G185776 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1237.6 768 79.2
Potri.003G185951 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1236.1 768 78.9
Migut.E01375 Erythranthe guttata HOM05D004228 ORTHO05D005137 0.0e+00 1234.6 767 78.5
FAN14G1073 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1233.8 809 76.8
FAN09G0969 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1231.5 813 76.4
GSVIVG01016092001 Vitis vinifera HOM05D004228 ORTHO05D005137 0.0e+00 1231.1 772 79.1
Actinidia25487 Actinidia chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1228.0 774 77.6
TAR626G1406 Trochodendron aralioides HOM05D004228 ORTHO05D005137 0.0e+00 1226.5 772 78.2
Thecc.06G048200 Theobroma cacao HOM05D004228 ORTHO05D005137 0.0e+00 1226.1 774 77.5
Rhsim08G0202500 Rhododendron simsii HOM05D004228 ORTHO05D005137 0.0e+00 1218.0 821 74.2
Ca_13679_v3 Cicer arietinum L. HOM05D004228 ORTHO05D005137 0.0e+00 1214.1 769 77.2
CANSAT64G2586 Cannabis sativa HOM05D004228 ORTHO05D005137 0.0e+00 1211.1 780 77.1
Duzib160G0712 Durio zibethinus HOM05D004228 ORTHO05D005137 0.0e+00 1211.1 778 76.5
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1206.0 770 76.2
Psat4g022640 Pisum sativum HOM05D004228 ORTHO05D005137 0.0e+00 1204.5 770 76.1
Ciclev10024933m.g Citrus clementina HOM05D004228 ORTHO05D005137 0.0e+00 1203.3 776 76.5
TWI12G1267 Tripterygium wilfordii HOM05D004228 ORTHO05D005137 0.0e+00 1203.3 775 76.1
Lj6g0018144 Lotus japonicus HOM05D004228 ORTHO05D005137 0.0e+00 1201.8 780 76.5
HanXRQChr13g0411161 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1198.7 768 76.7
Gohir.A10G000600 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1198.0 770 76.8
Glyma.13G072500 Glycine max HOM05D004228 ORTHO05D005137 0.0e+00 1195.3 768 77.3
Sabra03G0135800 Salix brachista HOM05D004228 ORTHO05D005137 0.0e+00 1188.7 778 75.7
arahy.Tifrunner.gnm1.ann1.1BZV33 Arachis hypogaea HOM05D004228 ORTHO05D005137 0.0e+00 1188.3 761 77.7
Gorai.011G001100 Gossypium raimondii HOM05D004228 ORTHO05D005137 0.0e+00 1188.3 771 76.1
Gohir.D10G000700 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1187.6 770 76.0
Phvul.006G018900 Phaseolus vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1185.6 767 76.3
Sed0017026 Sechium edule HOM05D004228 ORTHO05D005137 0.0e+00 1185.6 772 76.8
Lalb_Chr18g0048351 Lupinus albus HOM05D004228 ORTHO05D005137 0.0e+00 1185.2 769 75.7
MELO3C023479.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1184.9 757 77.7
Aqoxy7G02340 Aquilegia oxysepala HOM05D004228 ORTHO05D005137 0.0e+00 1183.7 774 74.7
DCAR_030908 Daucus carota HOM05D004228 ORTHO05D005137 0.0e+00 1182.2 773 75.2
Nn8g40122 Nelumbo nucifera HOM05D004228 ORTHO05D005137 0.0e+00 1182.2 768 75.3
HanXRQChr17g0558091 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1176.4 769 74.9
VMungo0540G0565 Vigna mungo HOM05D004228 ORTHO05D005137 0.0e+00 1174.8 767 75.5
PSO170G5168 Papaver somniferum HOM05D004228 ORTHO05D005137 0.0e+00 1174.1 772 75.6
CsaV3_7G031770 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1173.3 759 77.1
Lsat_1_v5_gn_6_17241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1173.3 770 75.1
THA.LOC104813593 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 0.0e+00 1165.6 771 74.3
Lsat_1_v5_gn_3_53241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1159.8 774 74.5
Atru.chr1.2817 Acer truncatum HOM05D004228 ORTHO05D005137 0.0e+00 1157.1 756 77.0
BraA07t30343Z Brassica rapa HOM05D004228 ORTHO05D005137 0.0e+00 1156.0 773 73.5
MELO3C023478.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1156.0 772 74.4
EL10Ac8g19421 Beta vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1155.2 768 74.3
CsaV3_7G031780 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1150.6 771 74.2
DCAR_002193 Daucus carota HOM05D004228 ORTHO05D005137 0.0e+00 1150.6 773 74.1
A07p26990 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1149.8 773 72.8
Ah.09g231750 Amaranthus hybridus HOM05D004228 ORTHO05D005137 0.0e+00 1149.4 772 74.0
BcaNung04171 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1146.7 771 72.2
Haze_16698 Corylus avellana HOM05D004228 ORTHO05D005137 0.0e+00 1146.0 882 68.0
BolC6t38132H Brassica oleracea HOM05D004228 ORTHO05D005137 0.0e+00 1145.2 773 72.3
CARHR073460 Cardamine hirsuta HOM05D004228 ORTHO05D005137 0.0e+00 1141.7 771 71.9
C06p29710 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1141.3 773 72.2
Thhalv10018131m.g Eutrema salsugineum HOM05D004228 ORTHO05D005137 0.0e+00 1140.9 774 72.0
BcaB02g07234 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1140.2 771 72.1
ClCG09G003440 Citrullus lanatus HOM05D004228 ORTHO05D005137 0.0e+00 1138.6 788 73.1
ECA240G4106 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1138.3 770 73.2
Sp5g34750 Schrenkiella parvula HOM05D004228 ORTHO05D005137 0.0e+00 1138.3 771 72.0
AT1G79690 Arabidopsis thaliana HOM05D004228 ORTHO05D005137 0.0e+00 1137.1 769 72.2
Nitab4.5_0002244g0120 Nicotiana tabacum HOM05D004228 ORTHO05D005137 0.0e+00 1135.9 634 91.2
Nitab4.5_0000030g0500 Nicotiana tabacum HOM05D004228 ORTHO05D005137 0.0e+00 1135.2 662 87.8
AUR62002649 Chenopodium quinoa HOM05D004228 ORTHO05D005137 0.0e+00 1131.7 785 72.7
Os02g0793300 Oryza sativa ssp. japonica HOM05D004228 ORTHO05D005137 0.0e+00 1130.5 767 72.0
AL2G40390 Arabidopsis lyrata HOM05D004228 ORTHO05D005137 0.0e+00 1129.4 769 72.2
Zm00001eb192570 Zea mays HOM05D004228 ORTHO05D005137 0.0e+00 1122.8 771 70.9
Carub.0002s2655 Capsella rubella HOM05D004228 ORTHO05D005137 0.0e+00 1120.1 768 71.9
BcaB02g08706 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1119.8 771 70.6
Aa31LG4G1300 Aethionema arabicum HOM05D004228 ORTHO05D005137 0.0e+00 1115.9 766 72.5
ATR0789G048 Amborella trichopoda HOM05D004228 ORTHO05D005137 0.0e+00 1112.8 777 70.7
BcaC08g47528 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1110.9 767 70.5
ECA240G2553 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1107.4 745 73.2
HPP92_017167 Vanilla planifolia HOM05D004228 ORTHO05D005137 0.0e+00 1105.5 776 69.8
C06p53520 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1095.5 777 69.0
SGA_v2.0_scaffold121G33058 Striga asiatica HOM05D004228 ORTHO05D005137 0.0e+00 1090.1 783 70.2
Actinidia18265 Actinidia chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1087.8 679 78.2
BraA07t31978Z Brassica rapa HOM05D004228 ORTHO05D005137 1.1e-311 1072.8 775 68.3
Medtr3g437740 Medicago truncatula HOM05D004228 ORTHO05D005137 2.4e-310 1068.5 695 75.5
BolC6t40368H Brassica oleracea HOM05D004228 ORTHO05D005137 1.2e-309 1066.2 777 67.7
A07p44700 Brassica napus HOM05D004228 ORTHO05D005137 5.9e-309 1063.9 780 67.7
THA.LOC104808168 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 6.7e-305 1050.4 775 67.7
vmacro19079 Vaccinium macrocarpon HOM05D004228 ORTHO05D005137 1.1e-304 1049.7 758 70.6
unitig_37.g12907 Utricularia gibba HOM05D004228 ORTHO05D005137 9.7e-304 1046.6 782 66.9
MELO3C023481.2 Cucumis melo HOM05D004228 ORTHO05D005137 1.7e-300 1035.8 766 68.1
FAN02G0630 Fragaria x ananassa HOM05D004228 ORTHO05D005137 5.0e-300 1034.2 692 75.6
MD17G1227300 Malus domestica HOM05D004228 ORTHO05D005137 4.4e-296 1021.1 766 68.7
VMungo1080G1878 Vigna mungo HOM05D004228 ORTHO05D005137 2.6e-293 1011.9 738 69.1
Eucgr.J03134 Eucalyptus grandis HOM05D004228 ORTHO05D005137 3.8e-292 1008.1 663 75.6
ATR0580G052 Amborella trichopoda HOM05D004228 ORTHO05D005137 2.8e-287 991.9 743 65.7
arahy.Tifrunner.gnm1.ann1.GHRN5T Arachis hypogaea HOM05D004228 ORTHO05D005137 1.2e-285 986.5 748 68.3
SMO337G0028 Selaginella moellendorffii HOM05D004228 ORTHO05D005137 2.9e-284 981.9 766 62.5
Pp3c5_190 Physcomitrium patens HOM05D004228 ORTHO05D005137 4.7e-282 974.5 766 63.1
Mapoly0059s0059 Marchantia polymorpha HOM05D004228 ORTHO05D005137 1.3e-279 966.5 763 63.7
arahy.Tifrunner.gnm1.ann1.XEX8KQ Arachis hypogaea HOM05D004228 ORTHO05D005137 1.9e-275 952.6 748 66.6
AagrBONN_evm.TU.Sc2ySwM_117.2286 Anthoceros agrestis HOM05D004228 ORTHO05D005137 5.4e-254 881.3 698 63.6
Lsat_1_v5_gn_0_21260 Lactuca sativa HOM05D004228 ORTHO05D005137 6.4e-247 857.8 666 65.3
Lsat_1_v5_gn_0_21180 Lactuca sativa HOM05D004228 ORTHO05D005137 7.8e-245 850.9 644 65.8
Manes.11G069700 Manihot esculenta HOM05D004228 ORTHO05D005137 1.9e-238 829.7 591 71.7
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 2.0e-232 809.7 561 70.4
Hma1.2p1_0338F.1_g129690 Hydrangea macrophylla HOM05D004228 ORTHO05D005137 2.5e-227 792.7 512 76.0
AUR62034058 Chenopodium quinoa HOM05D004228 ORTHO05D005137 1.8e-225 786.6 752 57.4
Oeu057157.1 Olea europaea HOM05D004228 ORTHO05D005137 1.6e-205 720.3 439 80.9
arahy.Tifrunner.gnm1.ann1.W5V7W0 Arachis hypogaea HOM05D004228 ORTHO05D005137 1.2e-192 677.6 446 75.6
PSO017G2203 Papaver somniferum HOM05D004228 ORTHO05D005137 1.6e-152 544.3 349 75.6
MBI14_g16439_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 2.1e-149 533.9 611 49.6
PSO017G5477 Papaver somniferum HOM05D004228 ORTHO05D005137 9.8e-147 525.0 371 72.2
SEGI_32687 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 1.1e-121 441.8 359 61.0
COL.COLO4_26790 Corchorus olitorius HOM05D004228 ORTHO05D005137 1.9e-118 431.0 272 76.8
Lsat_1_v5_gn_3_49001 Lactuca sativa HOM05D004228 ORTHO05D005137 6.4e-98 362.8 260 69.6
Cpa.g.sc167.19 Carica papaya HOM05D004228 ORTHO05D005137 5.5e-97 359.8 248 71.8
COL.COLO4_26791 Corchorus olitorius HOM05D004228 ORTHO05D005137 1.9e-78 298.1 357 47.9
MBI14_g16438_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 5.3e-76 290.0 190 71.6
MD09G1228800 Malus domestica HOM05D004228 ORTHO05D005137 1.0e-74 285.8 266 58.3
RcHm_v2.0_Chr2g0132171 Rosa chinensis HOM05D004228 ORTHO05D005137 3.2e-73 280.8 260 61.5
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 1.3e-69 268.9 213 66.7
MD00G1188200 Malus domestica HOM05D004228 ORTHO05D005137 1.5e-67 261.9 252 57.1
Gorai.007G245800 Gossypium raimondii HOM05D004228 ORTHO05D005137 2.6e-67 261.2 157 79.0
Gorai.008G198300 Gossypium raimondii HOM05D004228 ORTHO05D005137 2.7e-64 251.1 141 83.7
Gohir.D12G184901 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.4e-60 238.8 141 80.1
CBR_g49119 Chara braunii HOM05D004228 ORTHO05D005137 1.8e-60 238.4 222 54.5
Nitab4.5_0002244g0110 Nicotiana tabacum HOM05D004228 ORTHO05D005137 3.3e-54 217.6 117 92.3
Nitab4.5_0000030g0490 Nicotiana tabacum HOM05D004228 ORTHO05D005137 6.3e-53 213.4 117 90.6
CBR_g49132 Chara braunii HOM05D004228 ORTHO05D005137 9.4e-49 199.5 149 63.1
Gorai.006G048700 Gossypium raimondii HOM05D004228 ORTHO05D005137 4.4e-46 190.7 109 81.7
Glyma.20G046501 Glycine max HOM05D004228 ORTHO05D005137 5.7e-46 190.3 156 64.1
CBR_g49120 Chara braunii HOM05D000019 ORTHO05D000002 2.8e-45 188.0 204 49.5
Oeu057158.1 Olea europaea HOM05D004228 ORTHO05D005137 3.5e-43 181.0 117 75.2
Cfa001845 Carpinus fangiana HOM05D004228 ORTHO05D005137 4.5e-43 180.6 117 76.9
SEGI_04747 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 8.0e-40 169.9 105 74.3
SEGI_17966 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 6.8e-39 166.8 117 67.5
FAN02G0140 Fragaria x ananassa HOM05D004228 ORTHO05D005137 1.2e-38 166.0 103 78.6
SEGI_21553 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 2.2e-37 161.8 97 76.3
MD09G1229100 Malus domestica HOM05D004228 ORTHO05D005137 2.4e-36 158.3 90 81.1
CBR_g49131 Chara braunii HOM05D007088 ORTHO05D008477 1.5e-33 149.1 95 71.6
Gorai.002G214900 Gossypium raimondii HOM05D004228 ORTHO05D005137 1.8e-31 142.1 82 80.5
Gohir.A06G076350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 8.9e-31 139.8 101 70.3
Gohir.D02G099801 Gossypium hirsutum HOM05D004228 ORTHO05D005137 8.9e-31 139.8 101 70.3
Glyma.20G046401 Glycine max HOM05D004228 ORTHO05D005137 2.6e-30 138.3 95 72.6
Gohir.A07G034550 Gossypium hirsutum HOM05D004228 ORTHO05D005137 2.6e-30 138.3 101 68.3
Gohir.A05G304350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 4.4e-30 137.5 86 76.7
Gohir.D13G121066 Gossypium hirsutum HOM05D004228 ORTHO05D005137 3.7e-29 134.4 82 74.4
CDE02G2004 Ceratophyllum demersum HOM05D004228 ORTHO05D005137 1.4e-28 132.5 104 64.4
Gohir.D09G001001 Gossypium hirsutum HOM05D004228 ORTHO05D005137 2.3e-26 125.2 218 39.4
Gorai.009G406300 Gossypium raimondii HOM05D004228 ORTHO05D005137 2.5e-25 121.7 218 39.0
MD00G1188000 Malus domestica HOM05D004228 ORTHO05D005137 4.3e-25 120.9 77 74.0
SEGI_15998 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 4.4e-22 110.9 74 66.2
Lsat_1_v5_gn_5_149700 Lactuca sativa HOM05D004228 ORTHO05D016156 3.7e-21 107.8 86 62.8
MCO12G087 Micromonas commoda HOM05D004228 ORTHO05D005137 1.3e-18 99.4 163 38.7
Actinidia00024 Actinidia chinensis HOM05D000639 ORTHO05D019441 1.1e-15 89.7 120 46.7
Gohir.A11G044150 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.3e-13 82.8 55 72.7
MBI14_g16442_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 2.4e-12 78.6 45 77.8
Cre08.g381800 Chlamydomonas reinhardtii HOM05D004228 ORTHO05D005137 2.1e-11 75.5 175 35.4
Cpa.g.sc167.21 Carica papaya HOM05D004228 ORTHO05D043558 4.6e-11 74.3 37 81.1
Lsat_1_v5_gn_4_114980 Lactuca sativa HOM05D004228 ORTHO05D005137 5.1e-10 70.9 56 64.3
MD00G1188100 Malus domestica HOM05D004228 ORTHO05D043558 6.8e-07 60.5 29 86.2
Pp3c5_70 Physcomitrium patens HOM05D004228 ORTHO05D005137 1.2e-06 59.7 43 58.1
arahy.Tifrunner.gnm1.ann1.H1NXHC Arachis hypogaea HOM05D000009 ORTHO05D000008 3.4e-06 58.2 38 76.3


User provided reference genes

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