Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g075150.3 Solanum lycopersicum HOM05D006619 ORTHO05D008351 6.6e-188 660.6 347 100.0
Sopen08g023780 Solanum pennellii HOM05D006619 ORTHO05D008351 3.2e-182 641.7 347 97.7
PGSC0003DMG400020810 Solanum tuberosum HOM05D006619 ORTHO05D008351 6.9e-177 624.0 347 94.5
Peaxi162Scf00014g02116 Petunia axillaris HOM05D006619 ORTHO05D008351 1.0e-132 477.2 363 73.3
Nitab4.5_0000975g0010 Nicotiana tabacum HOM05D006619 ORTHO05D008351 2.2e-127 459.5 373 71.0
Nitab4.5_0000236g0060 Nicotiana tabacum HOM05D006619 ORTHO05D008351 5.0e-127 458.4 373 70.5
Thecc.03G321400 Theobroma cacao HOM05D006619 ORTHO05D008351 2.3e-79 300.1 366 48.1
Prupe.5G014600 Prunus persica HOM05D006619 ORTHO05D008351 5.1e-79 298.9 361 48.5
Rhsim07G0140900 Rhododendron simsii HOM05D006619 ORTHO05D008351 8.6e-79 298.1 367 49.0
MD06G1011900 Malus domestica HOM05D006619 ORTHO05D008351 3.3e-78 296.2 353 46.7
RcHm_v2.0_Chr7g0215151 Rosa chinensis HOM05D006619 ORTHO05D008351 9.5e-78 294.7 352 48.3
FAN18G2839 Fragaria x ananassa HOM05D006619 ORTHO05D008351 3.6e-77 292.7 359 46.2
TAR629G0027 Trochodendron aralioides HOM05D006619 ORTHO05D008351 4.7e-77 292.4 371 47.7
FvH4_5g24810 Fragaria vesca HOM05D006619 ORTHO05D008351 1.1e-76 291.2 359 46.2
FAN08G1468 Fragaria x ananassa HOM05D006619 ORTHO05D008351 1.8e-76 290.4 359 46.5
TWI60G1390 Tripterygium wilfordii HOM05D006619 ORTHO05D008351 6.8e-76 288.5 355 48.7
FAN13G0980 Fragaria x ananassa HOM05D006619 ORTHO05D008351 8.9e-76 288.1 363 46.3
Duzib084G0833 Durio zibethinus HOM05D006619 ORTHO05D008351 4.4e-75 285.8 357 47.3
GSVIVG01036901001 Vitis vinifera HOM05D006619 ORTHO05D008351 5.8e-75 285.4 319 51.7
Dinv37439 Davidia involucrata HOM05D006619 ORTHO05D008351 1.3e-74 284.3 330 49.7
FAN04G1190 Fragaria x ananassa HOM05D006619 ORTHO05D008351 1.1e-73 281.2 359 46.0
COL.COLO4_16736 Corchorus olitorius HOM05D006619 ORTHO05D008351 1.9e-73 280.4 362 46.1
PSO170G1900 Papaver somniferum HOM05D006619 ORTHO05D008351 6.0e-72 275.4 352 46.3
Dinv09413 Davidia involucrata HOM05D006619 ORTHO05D008351 2.3e-71 273.5 312 51.3
Actinidia18172 Actinidia chinensis HOM05D006619 ORTHO05D008351 1.5e-70 270.8 364 44.5
Cc08_g06080 Coffea canephora HOM05D006619 ORTHO05D008351 9.6e-70 268.1 351 44.2
PSO017G2194 Papaver somniferum HOM05D006619 ORTHO05D008351 1.2e-69 267.7 359 46.0
Manes.17G002400 Manihot esculenta HOM05D006619 ORTHO05D008351 2.1e-69 266.9 331 48.9
Lj2g0025157 Lotus japonicus HOM05D006619 ORTHO05D008351 6.2e-69 265.4 350 43.1
DCAR_004540 Daucus carota HOM05D006619 ORTHO05D008351 3.1e-68 263.1 360 45.8
Ciclev10001580m.g Citrus clementina HOM05D006619 ORTHO05D008351 5.2e-68 262.3 355 45.9
CiPaw.11G070000 Carya illinoinensis HOM05D006619 ORTHO05D008351 8.9e-68 261.5 352 45.5
Glyma.09G217700 Glycine max HOM05D006619 ORTHO05D008351 1.2e-67 261.2 357 43.1
Gohir.D08G169400 Gossypium hirsutum HOM05D006619 ORTHO05D008351 2.6e-67 260.0 324 45.4
Lalb_Chr16g0380481 Lupinus albus HOM05D006619 ORTHO05D008351 2.6e-67 260.0 363 41.9
Gohir.A08G148300 Gossypium hirsutum HOM05D006619 ORTHO05D008351 3.4e-67 259.6 324 45.7
Lj8A366T23 Lonicera japonica HOM05D006619 ORTHO05D008351 5.8e-67 258.8 308 50.3
Gorai.004G176600 Gossypium raimondii HOM05D006619 ORTHO05D008351 7.6e-67 258.5 324 45.1
Duzib205G1329 Durio zibethinus HOM05D006619 ORTHO05D008351 6.4e-66 255.4 345 45.5
Sabra01G0179200 Salix brachista HOM05D006619 ORTHO05D008351 6.4e-66 255.4 355 44.8
Eucgr.D02571 Eucalyptus grandis HOM05D006619 ORTHO05D008351 2.4e-65 253.4 361 43.2
Glyma.01G152500 Glycine max HOM05D006619 ORTHO05D008351 2.4e-65 253.4 371 42.6
Medtr5g025800 Medicago truncatula HOM05D006619 ORTHO05D008351 5.4e-65 252.3 359 41.2
Migut.E01382 Erythranthe guttata HOM05D006619 ORTHO05D008351 1.2e-64 251.1 342 43.9
Aqoxy3G01986 Aquilegia oxysepala HOM05D006619 ORTHO05D008351 1.6e-64 250.8 359 41.2
Cfa012616 Carpinus fangiana HOM05D006619 ORTHO05D008351 2.1e-64 250.4 343 45.2
Psat0s808g0080 Pisum sativum HOM05D006619 ORTHO05D008351 2.1e-64 250.4 355 42.3
Lalb_Chr05g0215221 Lupinus albus HOM05D006619 ORTHO05D008351 3.5e-64 249.6 361 41.6
TPR.G7876 Trifolium pratense HOM05D006619 ORTHO05D008351 3.5e-64 249.6 357 40.9
Lsat_1_v5_gn_3_19920 Lactuca sativa HOM05D006619 ORTHO05D008351 1.0e-63 248.1 308 46.8
HanXRQChr06g0173221 Helianthus annuus HOM05D006619 ORTHO05D008351 6.6e-63 245.4 326 43.9
Atru.chr6.2146 Acer truncatum HOM05D006619 ORTHO05D008351 3.1e-60 236.5 358 41.3
AUR62010492 Chenopodium quinoa HOM05D006619 ORTHO05D008351 5.8e-59 232.3 322 44.7
ClCG11G016190 Citrullus lanatus HOM05D006619 ORTHO05D008351 1.3e-58 231.1 355 41.1
VMungo1215G3049 Vigna mungo HOM05D006619 ORTHO05D008351 1.4e-57 227.6 324 42.3
Sc07g0008130 Simmondsia chinensis HOM05D006619 ORTHO05D008351 3.2e-57 226.5 312 44.6
Ca_25054_v3 Cicer arietinum L. HOM05D006619 ORTHO05D008351 5.4e-57 225.7 364 39.6
Phvul.002G123000 Phaseolus vulgaris HOM05D006619 ORTHO05D008351 7.1e-57 225.3 343 40.2
PGR031G2471 Punica granatum HOM05D006619 ORTHO05D008351 1.2e-56 224.6 338 41.4
CDE01G0342 Ceratophyllum demersum HOM05D006619 ORTHO05D008351 2.7e-56 223.4 319 41.4
ATR0568G188 Amborella trichopoda HOM05D006619 ORTHO05D008351 2.3e-55 220.3 327 44.3
AUR62017411 Chenopodium quinoa HOM05D006619 ORTHO05D008351 8.7e-55 218.4 320 43.8
ECA246G4124 Erigeron canadensis HOM05D006619 ORTHO05D008351 2.5e-54 216.9 345 39.4
Ah.12g058350 Amaranthus hybridus HOM05D006619 ORTHO05D008351 7.3e-54 215.3 312 41.3
CSS0018284 Camellia sinensis var. sinensis HOM05D006619 ORTHO05D008351 1.6e-53 214.2 262 50.0
Potri.004G234300 Populus trichocarpa HOM05D006619 ORTHO05D008351 1.2e-51 208.0 271 47.6
EL10Ac5g12595 Beta vulgaris HOM05D006619 ORTHO05D008351 7.9e-48 195.3 278 46.8
arahy.Tifrunner.gnm1.ann1.7E2RQS Arachis hypogaea HOM05D006619 ORTHO05D008351 1.0e-47 194.9 333 39.0
arahy.Tifrunner.gnm1.ann1.TY5C82 Arachis hypogaea HOM05D006619 ORTHO05D008351 1.0e-47 194.9 333 39.0
THA.LOC104811203 Tarenaya hassleriana HOM05D006619 ORTHO05D008351 1.3e-47 194.5 360 36.9
CANSAT35G0271 Cannabis sativa HOM05D006619 ORTHO05D008351 1.8e-47 194.1 342 39.8
SGA_v2.0_scaffold121G33054 Striga asiatica HOM05D006619 ORTHO05D008351 2.3e-47 193.7 330 36.7
MELO3C010535.2 Cucumis melo HOM05D006619 ORTHO05D008351 1.9e-46 190.7 299 42.8
Haze_08049 Corylus avellana HOM05D006619 ORTHO05D008351 3.3e-46 189.9 257 46.3
Haze_08039 Corylus avellana HOM05D006619 ORTHO05D008351 1.6e-45 187.6 257 45.9
CsaV3_4G014810 Cucumis sativus L. HOM05D006619 ORTHO05D008351 2.1e-45 187.2 303 41.6
Sed0005654 Sechium edule HOM05D006619 ORTHO05D008351 2.8e-45 186.8 274 44.9
SHI32758 Sapria himalayana HOM05D006619 ORTHO05D008351 1.7e-42 177.6 347 36.3
Sed0000478 Sechium edule HOM05D006619 ORTHO05D008351 8.4e-42 175.3 274 41.6
Hund14312 Selenicereus undatus HOM05D006619 ORTHO05D008351 4.2e-41 172.9 247 45.7
SalBow1G1985 Salvia bowleyana HOM05D006619 ORTHO05D008351 2.3e-39 167.2 337 36.5
SalBow8G3333 Salvia bowleyana HOM05D006619 ORTHO05D008351 8.7e-39 165.2 337 36.2
Cpa.g.sc137.4 Carica papaya HOM05D006619 ORTHO05D008351 3.7e-37 159.8 269 38.7
SEGI_11154 Sequoiadendron giganteum HOM05D006619 ORTHO05D008351 8.2e-37 158.7 295 38.6
Nn1g09329 Nelumbo nucifera HOM05D006619 ORTHO05D008351 5.3e-36 156.0 217 44.7
Manes.15G190475 Manihot esculenta HOM05D006619 ORTHO05D008351 3.8e-34 149.8 230 44.8
Sp2g10250 Schrenkiella parvula HOM05D006619 ORTHO05D008351 1.6e-32 144.4 347 31.1
Thhalv10001132m.g Eutrema salsugineum HOM05D006619 ORTHO05D008351 1.3e-31 141.4 349 31.8
AT5G45310 Arabidopsis thaliana HOM05D006619 ORTHO05D008351 3.0e-31 140.2 333 33.0
QL12p003333 Quercus lobata HOM05D006619 ORTHO05D008351 1.5e-30 137.9 202 44.6
QL12p003340 Quercus lobata HOM05D006619 ORTHO05D008351 1.5e-30 137.9 141 48.9
CARHR176830 Cardamine hirsuta HOM05D006619 ORTHO05D008351 7.4e-30 135.6 333 31.8
BcaB07g30899 Brassica carinata HOM05D006619 ORTHO05D008351 9.7e-30 135.2 346 32.1
Zm00001eb140380 Zea mays HOM05D006619 ORTHO05D008351 2.8e-29 133.7 291 35.4
BcaC04g21786 Brassica carinata HOM05D006619 ORTHO05D008351 1.8e-28 131.0 333 31.8
C09p27640 Brassica napus HOM05D006619 ORTHO05D008351 1.8e-28 131.0 333 31.8
BolC9t55627H Brassica oleracea HOM05D006619 ORTHO05D008351 1.8e-28 131.0 333 31.8
AL8G13490 Arabidopsis lyrata HOM05D006619 ORTHO05D008351 1.5e-27 127.9 333 31.2
BraA09t37763Z Brassica rapa HOM05D006619 ORTHO05D008351 2.6e-27 127.1 342 30.1
A09p21640 Brassica napus HOM05D006619 ORTHO05D008351 5.9e-27 125.9 342 30.1
Oeu045949.2 Olea europaea HOM05D006619 ORTHO05D008351 1.3e-26 124.8 103 59.2
Aa31LG9G7710 Aethionema arabicum HOM05D006619 ORTHO05D008351 3.8e-26 123.2 359 29.5
Carub.0008s0284 Capsella rubella HOM05D006619 ORTHO05D008351 2.5e-22 110.5 291 31.6
Pp3c25_50 Physcomitrium patens HOM05D006619 ORTHO05D008351 2.5e-22 110.5 316 28.5
SMO367G0687 Selaginella moellendorffii HOM05D003392 ORTHO05D003801 9.7e-22 108.6 255 31.4
EL10Ac5g12596 Beta vulgaris HOM05D006619 ORTHO05D008351 4.8e-21 106.3 294 31.0
COL.COLO4_16514 Corchorus olitorius HOM05D006619 ORTHO05D008351 1.8e-20 104.4 234 32.5
Os01g0962100 Oryza sativa ssp. japonica HOM05D006619 ORTHO05D008351 3.1e-20 103.6 274 32.1
HPP92_015143 Vanilla planifolia HOM05D000346 ORTHO05D004932 3.4e-19 100.1 251 33.1
AagrBONN_evm.TU.Sc2ySwM_344.2089 Anthoceros agrestis HOM05D006619 ORTHO05D008351 1.9e-17 94.4 300 27.7
AagrBONN_evm.TU.Sc2ySwM_117.1666 Anthoceros agrestis HOM05D006619 ORTHO05D008351 2.5e-17 94.0 264 28.8
Hund28917 Selenicereus undatus HOM05D006619 ORTHO05D008351 3.6e-16 90.1 112 40.2
Hund28918 Selenicereus undatus HOM05D006619 ORTHO05D008351 3.6e-16 90.1 112 40.2
Nn1g09286 Nelumbo nucifera HOM05D006619 ORTHO05D008351 1.1e-12 78.6 80 43.8
HanXRQChr04g0096591 Helianthus annuus HOM05D006619 ORTHO05D008351 3.2e-09 67.0 81 45.7


User provided reference genes

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