Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g069020.1 Solanum lycopersicum HOM05D009522 ORTHO05D009846 3.7e-169 598.6 421 100.0
Sopen08g022670 Solanum pennellii HOM05D009522 ORTHO05D009846 6.2e-164 581.3 421 88.8
PGSC0003DMG400029579 Solanum tuberosum HOM05D009522 ORTHO05D009846 2.5e-149 532.7 423 83.9
CAN.G908.7 Capsicum annuum HOM05D009522 ORTHO05D009846 1.9e-125 453.4 430 67.9
Peaxi162Scf00288g00084 Petunia axillaris HOM05D009522 ORTHO05D009846 1.1e-88 331.3 435 58.9
Nitab4.5_0002023g0020 Nicotiana tabacum HOM05D009522 ORTHO05D009846 4.1e-75 286.2 442 54.8
Nitab4.5_0000502g0110 Nicotiana tabacum HOM05D009522 ORTHO05D009846 3.5e-66 256.5 421 50.4
Solyc12g096400.2 Solanum lycopersicum HOM05D009522 ORTHO05D009846 8.7e-33 145.6 492 36.4
Sopen12g032250 Solanum pennellii HOM05D009522 ORTHO05D009846 3.6e-31 140.2 489 42.7
PGSC0003DMG400029280 Solanum tuberosum HOM05D009522 ORTHO05D009846 1.5e-29 134.8 488 34.8
Nitab4.5_0001159g0190 Nicotiana tabacum HOM05D009522 ORTHO05D009846 1.3e-28 131.7 488 34.0
Nitab4.5_0010092g0020 Nicotiana tabacum HOM05D009522 ORTHO05D009846 1.7e-28 131.3 492 34.3
CAN.G566.64 Capsicum annuum HOM05D009522 ORTHO05D009846 3.8e-28 130.2 499 35.5
Nitab4.5_0004131g0040 Nicotiana tabacum HOM05D017514 ORTHO05D009846 2.3e-25 120.9 353 44.5
Peaxi162Scf00459g00082 Petunia axillaris HOM05D009522 ORTHO05D009846 3.0e-25 120.6 513 40.4
Nitab4.5_0000555g0230 Nicotiana tabacum HOM05D017514 ORTHO05D009846 9.6e-24 115.5 354 41.0
Oeu018569.1 Olea europaea HOM05D009522 ORTHO05D009846 2.8e-15 87.4 440 31.8
Cc00_g05330 Coffea canephora HOM05D009522 ORTHO05D009846 1.9e-11 74.7 448 29.7
CAN.G426.21 Capsicum annuum HOM05D002375 ORTHO05D002457 1.6e-10 71.6 53 77.4
Medtr3g108830 Medicago truncatula HOM05D013197 ORTHO05D009846 2.3e-09 67.8 45 77.8
COL.COLO4_21376 Corchorus olitorius HOM05D003021 ORTHO05D002235 1.5e-08 65.1 50 68.0
Rhsim07G0169800 Rhododendron simsii HOM05D033576 ORTHO05D009846 1.9e-08 64.7 440 30.2
MSTRG.11810 Avicennia marina HOM05D009522 ORTHO05D009846 4.3e-08 63.5 42 78.6
Duzib187G0754 Durio zibethinus HOM05D003021 ORTHO05D002235 4.3e-08 63.5 50 68.0
CANSAT64G0795 Cannabis sativa HOM05D003021 ORTHO05D002235 9.7e-08 62.4 50 66.0
Duzib147G0806 Durio zibethinus HOM05D003021 ORTHO05D002235 9.7e-08 62.4 50 66.0
Gohir.A05G370400 Gossypium hirsutum HOM05D003021 ORTHO05D002235 9.7e-08 62.4 50 66.0
Gohir.D04G045100 Gossypium hirsutum HOM05D003021 ORTHO05D002235 9.7e-08 62.4 50 66.0
Gorai.012G050300 Gossypium raimondii HOM05D003021 ORTHO05D002235 9.7e-08 62.4 50 66.0
MD09G1061400 Malus domestica HOM05D003021 ORTHO05D002235 9.7e-08 62.4 50 66.0
MSTRG.13944 Avicennia marina HOM05D009522 ORTHO05D009846 1.3e-07 62.0 45 71.1
Ciclev10011360m.g Citrus clementina HOM05D003021 ORTHO05D002235 1.3e-07 62.0 50 64.0
FAN09G3860 Fragaria x ananassa HOM05D003021 ORTHO05D002235 1.3e-07 62.0 50 66.0
Atru.chr8.382 Acer truncatum HOM05D003021 ORTHO05D002235 1.6e-07 61.6 50 62.0
Cfa007625 Carpinus fangiana HOM05D003021 ORTHO05D002235 1.6e-07 61.6 50 68.0
Haze_14471 Corylus avellana HOM05D003021 ORTHO05D002235 1.6e-07 61.6 50 68.0
Migut.E01423 Erythranthe guttata HOM05D009522 ORTHO05D009846 1.6e-07 61.6 41 80.5
FAN05G2768 Fragaria x ananassa HOM05D003021 ORTHO05D002235 1.6e-07 61.6 50 64.0
Prupe.3G258800 Prunus persica HOM05D003021 ORTHO05D002235 1.6e-07 61.6 50 64.0
RcHm_v2.0_Chr2g0166531 Rosa chinensis HOM05D003021 ORTHO05D002235 1.6e-07 61.6 50 66.0
SGA_v2.0_scaffold121G33031 Striga asiatica HOM05D009522 ORTHO05D009846 1.6e-07 61.6 41 75.6
TWI60G1604 Tripterygium wilfordii HOM05D003021 ORTHO05D002235 1.6e-07 61.6 50 66.0
ClCG11G004640 Citrullus lanatus HOM05D003021 ORTHO05D002235 2.2e-07 61.2 50 66.0
MELO3C022022.2 Cucumis melo HOM05D003021 ORTHO05D002235 2.2e-07 61.2 50 66.0
CsaV3_5G038410 Cucumis sativus L. HOM05D003021 ORTHO05D002235 2.2e-07 61.2 50 66.0
FvH4_6g47500 Fragaria vesca HOM05D003021 ORTHO05D002235 2.2e-07 61.2 50 64.0
Sed0005734 Sechium edule HOM05D003021 ORTHO05D002235 2.2e-07 61.2 50 66.0
Thecc.04G090900 Theobroma cacao HOM05D003021 ORTHO05D002235 2.2e-07 61.2 50 64.0
CiPaw.04G058300 Carya illinoinensis HOM05D003021 ORTHO05D002235 2.8e-07 60.8 50 64.0
FAN14G5480 Fragaria x ananassa HOM05D003021 ORTHO05D002235 2.8e-07 60.8 50 64.0
Ah.10g031940 Amaranthus hybridus HOM05D003021 ORTHO05D002235 3.7e-07 60.5 50 62.0
CSS0009627 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 3.7e-07 60.5 50 64.0
CSS0042635 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 3.7e-07 60.5 50 64.0
Rhsim08G0073600 Rhododendron simsii HOM05D003021 ORTHO05D002235 3.7e-07 60.5 50 64.0
Actinidia01976 Actinidia chinensis HOM05D003021 ORTHO05D002235 4.8e-07 60.1 50 64.0
AUR62018150 Chenopodium quinoa HOM05D003021 ORTHO05D002235 4.8e-07 60.1 50 62.0
AUR62042563 Chenopodium quinoa HOM05D003021 ORTHO05D002235 4.8e-07 60.1 50 62.0
FAN08G3689 Fragaria x ananassa HOM05D003021 ORTHO05D002235 4.8e-07 60.1 48 64.6
Solyc08g006440.4 Solanum lycopersicum HOM05D017514 ORTHO05D009846 4.8e-07 60.1 50 70.0
EL10Ac2g03069 Beta vulgaris HOM05D003021 ORTHO05D002235 6.3e-07 59.7 50 60.0
FAN13G0757 Fragaria x ananassa HOM05D003021 ORTHO05D002235 6.3e-07 59.7 48 64.6
Nn3g17378 Nelumbo nucifera HOM05D003021 ORTHO05D002235 6.3e-07 59.7 50 64.0
TAR371G0449 Trochodendron aralioides HOM05D003021 ORTHO05D002235 6.3e-07 59.7 49 63.3
Dinv11486 Davidia involucrata HOM05D003021 ORTHO05D002235 8.2e-07 59.3 50 62.0
Migut.K01293 Erythranthe guttata HOM05D003021 ORTHO05D002235 8.2e-07 59.3 50 60.0
FvH4_5g14370 Fragaria vesca HOM05D003021 ORTHO05D002235 8.2e-07 59.3 48 64.6
HanXRQChr15g0488721 Helianthus annuus HOM05D003021 ORTHO05D002235 8.2e-07 59.3 50 64.0
Nitab4.5_0008213g0010 Nicotiana tabacum HOM05D003021 ORTHO05D002235 8.2e-07 59.3 48 66.7
Potri.017G090200 Populus trichocarpa HOM05D003021 ORTHO05D002235 8.2e-07 59.3 50 64.0
Sopen03g034540 Solanum pennellii HOM05D003021 ORTHO05D022173 8.2e-07 59.3 48 62.5
CARHR275010 Cardamine hirsuta HOM05D009040 ORTHO05D002235 1.1e-06 58.9 50 62.0
Ca_15666_v3 Cicer arietinum L. HOM05D013197 ORTHO05D009846 1.1e-06 58.9 45 71.1
Cc07_g03910 Coffea canephora HOM05D003021 ORTHO05D002235 1.1e-06 58.9 50 62.0
DCAR_011056 Daucus carota HOM05D003021 ORTHO05D002235 1.1e-06 58.9 50 62.0
Dinv10680 Davidia involucrata HOM05D003021 ORTHO05D002235 1.1e-06 58.9 48 64.6
ECA232G0555 Erigeron canadensis HOM05D003021 ORTHO05D002235 1.1e-06 58.9 50 64.0
Oeu000855.1 Olea europaea HOM05D003021 ORTHO05D002235 1.1e-06 58.9 48 64.6
QL02p039488 Quercus lobata HOM05D003021 ORTHO05D002235 1.1e-06 58.9 50 62.0
THA.LOC104801387 Tarenaya hassleriana HOM05D009040 ORTHO05D002235 1.1e-06 58.9 50 62.0
Actinidia09241 Actinidia chinensis HOM05D003021 ORTHO05D002235 1.4e-06 58.5 50 60.0
CiPaw.03G091400 Carya illinoinensis HOM05D003021 ORTHO05D002235 1.4e-06 58.5 48 64.6
Eucgr.B00563 Eucalyptus grandis HOM05D003021 ORTHO05D002235 1.4e-06 58.5 50 62.0
Manes.01G099000 Manihot esculenta HOM05D003021 ORTHO05D002235 1.4e-06 58.5 50 62.0
Medtr7g012290 Medicago truncatula HOM05D003021 ORTHO05D002235 1.4e-06 58.5 50 60.0
PGR031G3799 Punica granatum HOM05D009522 ORTHO05D009846 1.4e-06 58.5 427 26.7
SGA_v2.0_scaffold52G19187 Striga asiatica HOM05D003021 ORTHO05D002235 1.4e-06 58.5 50 62.0
TPR.G12338 Trifolium pratense HOM05D013197 ORTHO05D012811 1.4e-06 58.5 45 71.1
TAR629G0828 Trochodendron aralioides HOM05D003021 ORTHO05D002235 1.4e-06 58.5 50 62.0
Aa31LG3G18640 Aethionema arabicum HOM05D009040 ORTHO05D002235 1.8e-06 58.2 50 62.0
Lj9P468T32 Lonicera japonica HOM05D003021 ORTHO05D002235 1.8e-06 58.2 50 64.0
Nitab4.5_0002881g0010 Nicotiana tabacum HOM05D003021 ORTHO05D022173 1.8e-06 58.2 53 56.6
Sabra17G0079400 Salix brachista HOM05D003021 ORTHO05D002235 1.8e-06 58.2 50 62.0
THA.LOC104805496 Tarenaya hassleriana HOM05D003021 ORTHO05D002235 1.8e-06 58.2 50 62.0
TAR622G0013 Trochodendron aralioides HOM05D003021 ORTHO05D002235 1.8e-06 58.2 50 64.0
Aqoxy3G03562 Aquilegia oxysepala HOM05D003021 ORTHO05D002235 2.4e-06 57.8 50 60.0
A02p41540 Brassica napus HOM05D009040 ORTHO05D002235 2.4e-06 57.8 50 60.0
CAN.G479.38 Capsicum annuum HOM05D003021 ORTHO05D022173 2.4e-06 57.8 51 60.8
Dinv38770 Davidia involucrata HOM05D003021 ORTHO05D002235 2.4e-06 57.8 50 58.0
Migut.H00652 Erythranthe guttata HOM05D003021 ORTHO05D002235 2.4e-06 57.8 50 64.0
Lsat_1_v5_gn_4_170321 Lactuca sativa HOM05D003021 ORTHO05D002235 2.4e-06 57.8 50 62.0
MD06G1199300 Malus domestica HOM05D003021 ORTHO05D002235 2.4e-06 57.8 50 60.0
Oeu062145.1 Olea europaea HOM05D003021 ORTHO05D002235 2.4e-06 57.8 47 66.0
Potri.015G049600 Populus trichocarpa HOM05D003021 ORTHO05D002235 2.4e-06 57.8 50 62.0
PGR083G2506 Punica granatum HOM05D003021 ORTHO05D002235 2.4e-06 57.8 50 64.0
RcHm_v2.0_Chr7g0182331 Rosa chinensis HOM05D003021 ORTHO05D002235 2.4e-06 57.8 45 66.7
SalBow1G6367 Salvia bowleyana HOM05D003021 ORTHO05D002235 2.4e-06 57.8 50 62.0
SalBow8G0117 Salvia bowleyana HOM05D036756 ORTHO05D009846 2.4e-06 57.8 39 76.9
SalBow8G1342 Salvia bowleyana HOM05D036756 ORTHO05D009846 2.4e-06 57.8 39 76.9
TPR.G26183 Trifolium pratense HOM05D003021 ORTHO05D002235 2.4e-06 57.8 50 62.0
Thhalv10005353m.g Eutrema salsugineum HOM05D009040 ORTHO05D002235 3.1e-06 57.4 50 60.0
HanXRQChr09g0264151 Helianthus annuus HOM05D003021 ORTHO05D002235 3.1e-06 57.4 50 62.0
Nitab4.5_0001211g0040 Nicotiana tabacum HOM05D003021 ORTHO05D022173 3.1e-06 57.4 51 58.8
Phvul.004G033600 Phaseolus vulgaris HOM05D003021 ORTHO05D002235 3.1e-06 57.4 50 60.0
Sed0010326 Sechium edule HOM05D003021 ORTHO05D002235 3.1e-06 57.4 50 62.0
HPP92_010149 Vanilla planifolia HOM05D040231 ORTHO05D002235 3.1e-06 57.4 48 60.4
MD14G1207900 Malus domestica HOM05D003021 ORTHO05D002235 4.1e-06 57.0 50 60.0
Sp2g24490 Schrenkiella parvula HOM05D009040 ORTHO05D002235 4.1e-06 57.0 50 60.0
Zm00001eb400410 Zea mays HOM05D003021 ORTHO05D002235 4.1e-06 57.0 50 62.0
AL8G37920 Arabidopsis lyrata HOM05D009040 ORTHO05D002235 5.3e-06 56.6 50 60.0
BcaC06g32508 Brassica carinata HOM05D009040 ORTHO05D002235 5.3e-06 56.6 49 59.2
BcaC06g32509 Brassica carinata HOM05D009040 ORTHO05D002235 5.3e-06 56.6 49 59.2
C09p69010 Brassica napus HOM05D009040 ORTHO05D002235 5.3e-06 56.6 50 58.0
BolC9t59646H Brassica oleracea HOM05D009040 ORTHO05D002235 5.3e-06 56.6 50 58.0
BraA02t09095Z Brassica rapa HOM05D009040 ORTHO05D002235 5.3e-06 56.6 50 60.0
Cpa.g.sc23.16 Carica papaya HOM05D013263 ORTHO05D009846 5.3e-06 56.6 40 70.0
Ca_04869_v3 Cicer arietinum L. HOM05D003021 ORTHO05D002235 5.3e-06 56.6 50 60.0
Dinv21138 Davidia involucrata HOM05D003021 ORTHO05D009846 5.3e-06 56.6 48 66.7
Nitab4.5_0003145g0060 Nicotiana tabacum HOM05D003021 ORTHO05D002235 5.3e-06 56.6 50 58.0
Solyc02g088580.1 Solanum lycopersicum HOM05D003021 ORTHO05D002235 5.3e-06 56.6 48 64.6
Sopen02g033310 Solanum pennellii HOM05D003021 ORTHO05D002235 5.3e-06 56.6 48 64.6
PGSC0003DMG400001352 Solanum tuberosum HOM05D003021 ORTHO05D002235 5.3e-06 56.6 48 64.6
arahy.Tifrunner.gnm1.ann1.JN5ZJX Arachis hypogaea HOM05D003021 ORTHO05D002235 6.9e-06 56.2 50 60.0
A10p28700 Brassica napus HOM05D009040 ORTHO05D002235 6.9e-06 56.2 49 59.2
C02p61480 Brassica napus HOM05D009040 ORTHO05D002235 6.9e-06 56.2 50 58.0
BolC2t12199H Brassica oleracea HOM05D009040 ORTHO05D002235 6.9e-06 56.2 50 58.0
BraA10t44917Z Brassica rapa HOM05D009040 ORTHO05D002235 6.9e-06 56.2 49 59.2
CARHR205360 Cardamine hirsuta HOM05D009040 ORTHO05D002235 6.9e-06 56.2 49 59.2
Migut.A00437 Erythranthe guttata HOM05D009522 ORTHO05D009846 6.9e-06 56.2 42 71.4
Thhalv10013233m.g Eutrema salsugineum HOM05D009040 ORTHO05D002235 6.9e-06 56.2 49 59.2
Lj1g0014126 Lotus japonicus HOM05D003021 ORTHO05D002235 6.9e-06 56.2 50 60.0
Manes.06G088100 Manihot esculenta HOM05D003021 ORTHO05D002235 6.9e-06 56.2 48 62.5
PSO017G1133 Papaver somniferum HOM05D003021 ORTHO05D002235 6.9e-06 56.2 50 60.0
Peaxi162Scf00166g00071 Petunia axillaris HOM05D003021 ORTHO05D002235 6.9e-06 56.2 48 62.5
Peaxi162Scf00274g00005 Petunia axillaris HOM05D003021 ORTHO05D022173 6.9e-06 56.2 51 58.8
Rhsim12G0153000 Rhododendron simsii HOM05D003021 ORTHO05D002235 6.9e-06 56.2 50 64.0
PGSC0003DMG400024656 Solanum tuberosum HOM05D003021 ORTHO05D022173 6.9e-06 56.2 48 60.4
ClCG04G012000 Citrullus lanatus HOM05D003021 ORTHO05D002235 9.0e-06 55.8 50 60.0
Gohir.D09G010600 Gossypium hirsutum HOM05D003021 ORTHO05D002235 9.0e-06 55.8 52 59.6
Lj7C750T8 Lonicera japonica HOM05D031498 ORTHO05D009846 9.0e-06 55.8 39 69.2
Lj8P444T9 Lonicera japonica HOM05D009522 ORTHO05D009846 9.0e-06 55.8 44 70.5
Lj2g0010760 Lotus japonicus HOM05D003021 ORTHO05D002235 9.0e-06 55.8 50 60.0
Lalb_Chr06g0175101 Lupinus albus HOM05D003021 ORTHO05D002235 9.0e-06 55.8 50 60.0
MBI16_g15533_MAGBIO Magnolia biondii HOM05D003021 ORTHO05D002235 9.0e-06 55.8 50 60.0
Medtr6g013485 Medicago truncatula HOM05D003021 ORTHO05D002235 9.0e-06 55.8 50 58.0
TPR.G33474 Trifolium pratense HOM05D003021 ORTHO05D002235 9.0e-06 55.8 50 54.0


User provided reference genes

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