Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g069000.4 Solanum lycopersicum HOM05D004984 ORTHO05D006508 1.2e-225 786.2 385 100.0
PGSC0003DMG402029578 Solanum tuberosum HOM05D004984 ORTHO05D006508 1.9e-196 689.1 372 92.7
Sopen08g022650 Solanum pennellii HOM05D004984 ORTHO05D006508 3.2e-191 671.8 356 94.1
CAN.G908.9 Capsicum annuum HOM05D004984 ORTHO05D006508 6.9e-186 654.1 374 86.9
Peaxi162Scf00152g00730 Petunia axillaris HOM05D004984 ORTHO05D006508 7.6e-185 650.6 374 87.7
MSTRG.23114 Avicennia marina HOM05D004984 ORTHO05D006508 6.5e-168 594.3 363 78.8
Dinv08970 Davidia involucrata HOM05D004984 ORTHO05D006508 6.5e-168 594.3 372 78.0
MELO3C018046.2 Cucumis melo HOM05D004984 ORTHO05D006508 1.2e-166 590.1 372 78.0
ClCG10G009790 Citrullus lanatus HOM05D004984 ORTHO05D006508 2.1e-166 589.3 372 77.7
CsaV3_4G014670 Cucumis sativus L. HOM05D004984 ORTHO05D006508 4.6e-166 588.2 372 77.7
Cc02_g20610 Coffea canephora HOM05D004984 ORTHO05D006508 3.0e-165 585.5 360 79.2
CiPaw.06G160700 Carya illinoinensis HOM05D004984 ORTHO05D006508 1.5e-164 583.2 372 76.6
Dinv16030 Davidia involucrata HOM05D004984 ORTHO05D006508 1.9e-164 582.8 370 77.8
CSS0038067 Camellia sinensis var. sinensis HOM05D004984 ORTHO05D006508 3.3e-164 582.0 363 78.2
Sed0007187 Sechium edule HOM05D004984 ORTHO05D006508 7.4e-164 580.9 372 76.1
Actinidia02410 Actinidia chinensis HOM05D004984 ORTHO05D006508 9.6e-164 580.5 372 76.9
Thecc.02G125200 Theobroma cacao HOM05D004984 ORTHO05D006508 2.1e-163 579.3 372 77.7
QL11p026578 Quercus lobata HOM05D004984 ORTHO05D006508 4.1e-162 575.1 372 76.3
Oeu059891.1 Olea europaea HOM05D004984 ORTHO05D006508 9.0e-162 573.9 372 76.6
Prupe.8G074900 Prunus persica HOM05D004984 ORTHO05D006508 9.0e-162 573.9 372 76.6
Sed0006594 Sechium edule HOM05D004984 ORTHO05D006508 1.5e-161 573.2 372 76.1
Gorai.005G227400 Gossypium raimondii HOM05D004984 ORTHO05D006508 2.0e-161 572.8 372 75.5
SalBow6G5880 Salvia bowleyana HOM05D004984 ORTHO05D006508 2.0e-161 572.8 372 76.3
Duzib132G1162 Durio zibethinus HOM05D004984 ORTHO05D006508 2.6e-161 572.4 372 76.1
Duzib052G0292 Durio zibethinus HOM05D004984 ORTHO05D006508 3.4e-161 572.0 372 76.1
Gohir.A03G178800 Gossypium hirsutum HOM05D004984 ORTHO05D006508 3.4e-161 572.0 372 75.3
RcHm_v2.0_Chr6g0269501 Rosa chinensis HOM05D004984 ORTHO05D006508 3.4e-161 572.0 362 77.9
FAN27G1475 Fragaria x ananassa HOM05D004984 ORTHO05D006508 4.5e-161 571.6 363 77.1
Gohir.D02G202500 Gossypium hirsutum HOM05D004984 ORTHO05D006508 4.5e-161 571.6 372 75.5
Hma1.2p1_0435F.1_g152620 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 7.6e-161 570.9 372 76.6
FvH4_2g11180 Fragaria vesca HOM05D004984 ORTHO05D006508 1.0e-160 570.5 361 77.3
Nitab4.5_0006251g0010 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.0e-160 570.5 374 79.4
FAN20G2814 Fragaria x ananassa HOM05D004984 ORTHO05D006508 1.3e-160 570.1 361 77.3
FAN15G1055 Fragaria x ananassa HOM05D004984 ORTHO05D006508 5.0e-160 568.2 361 77.0
Lj5A225T68 Lonicera japonica HOM05D004984 ORTHO05D006508 1.4e-159 566.6 362 79.8
BcaB06g26775 Brassica carinata HOM05D004984 ORTHO05D006508 1.9e-159 566.2 359 77.4
MD05G1049600 Malus domestica HOM05D004984 ORTHO05D006508 4.2e-159 565.1 372 75.5
BcaC06g35862 Brassica carinata HOM05D004984 ORTHO05D006508 5.5e-159 564.7 359 77.4
BolC7t41481H Brassica oleracea HOM05D004984 ORTHO05D006508 5.5e-159 564.7 359 77.4
C07p10310 Brassica napus HOM05D004984 ORTHO05D006508 1.2e-158 563.5 359 77.2
CARHR102180 Cardamine hirsuta HOM05D004984 ORTHO05D006508 1.6e-158 563.1 366 77.0
CiPaw.05G027100 Carya illinoinensis HOM05D004984 ORTHO05D006508 1.6e-158 563.1 372 75.3
DCAR_029278 Daucus carota HOM05D004984 ORTHO05D006508 1.6e-158 563.1 365 77.8
MD10G1056700 Malus domestica HOM05D004984 ORTHO05D006508 2.1e-158 562.8 372 74.7
A07p06740 Brassica napus HOM05D004984 ORTHO05D006508 2.7e-158 562.4 359 77.2
BraA07t28467Z Brassica rapa HOM05D004984 ORTHO05D006508 2.7e-158 562.4 359 77.2
SGA_v2.0_scaffold219G42554 Striga asiatica HOM05D004984 ORTHO05D006508 4.6e-158 561.6 373 75.3
TAR376G0949 Trochodendron aralioides HOM05D004984 ORTHO05D006508 4.6e-158 561.6 372 75.5
AL3G42000 Arabidopsis lyrata HOM05D004984 ORTHO05D006508 7.9e-158 560.8 366 76.8
Thhalv10002529m.g Eutrema salsugineum HOM05D004984 ORTHO05D006508 7.9e-158 560.8 359 76.0
Migut.B00524 Erythranthe guttata HOM05D004984 ORTHO05D006508 1.8e-157 559.7 373 75.6
THA.LOC104808837 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 1.8e-157 559.7 382 74.6
Eucgr.I02584 Eucalyptus grandis HOM05D004984 ORTHO05D006508 2.3e-157 559.3 373 74.3
Gohir.D04G158100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.3e-157 559.3 372 74.5
Atru.chr6.1348 Acer truncatum HOM05D004984 ORTHO05D006508 3.9e-157 558.5 373 74.5
Actinidia00320 Actinidia chinensis HOM05D004984 ORTHO05D006508 5.1e-157 558.1 385 73.5
PGR142G0200 Punica granatum HOM05D004984 ORTHO05D006508 5.1e-157 558.1 372 74.2
Aa31sc202G40 Aethionema arabicum HOM05D004984 ORTHO05D006508 8.7e-157 557.4 359 76.3
Gohir.A04G116400 Gossypium hirsutum HOM05D004984 ORTHO05D006508 8.7e-157 557.4 372 74.2
Manes.07G046600 Manihot esculenta HOM05D004984 ORTHO05D006508 8.7e-157 557.4 372 73.1
Solyc10g047820.1 Solanum lycopersicum HOM05D004984 ORTHO05D006508 8.7e-157 557.4 372 73.9
THA.LOC104815368 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 8.7e-157 557.4 371 75.5
TAR381G0604 Trochodendron aralioides HOM05D004984 ORTHO05D006508 8.7e-157 557.4 356 77.0
Sp6g01600 Schrenkiella parvula HOM05D004984 ORTHO05D006508 1.1e-156 557.0 360 76.1
TAR625G1028 Trochodendron aralioides HOM05D004984 ORTHO05D006508 1.9e-156 556.2 372 74.2
GSVIVG01038516001 Vitis vinifera HOM05D004984 ORTHO05D006508 2.5e-156 555.8 373 74.3
Sopen10g018750 Solanum pennellii HOM05D004984 ORTHO05D006508 4.3e-156 555.1 372 73.7
Gorai.012G145500 Gossypium raimondii HOM05D004984 ORTHO05D006508 5.7e-156 554.7 372 74.2
HanXRQChr10g0291211 Helianthus annuus HOM05D004984 ORTHO05D006508 5.7e-156 554.7 363 74.9
Peaxi162Scf00003g03028 Petunia axillaris HOM05D004984 ORTHO05D006508 7.4e-156 554.3 356 76.1
Lsat_1_v5_gn_5_110941 Lactuca sativa HOM05D004984 ORTHO05D006508 1.6e-155 553.1 363 75.2
ECA234G3445 Erigeron canadensis HOM05D004984 ORTHO05D006508 1.1e-154 550.4 350 76.6
PGSC0003DMG400004399 Solanum tuberosum HOM05D004984 ORTHO05D006508 1.1e-154 550.4 372 73.4
vmacro01898 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 1.4e-154 550.1 358 75.4
vmacro23356 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 1.4e-154 550.1 358 75.4
Carub.0003s2601 Capsella rubella HOM05D004984 ORTHO05D006508 2.4e-154 549.3 366 74.9
Gorai.013G053700 Gossypium raimondii HOM05D004984 ORTHO05D006508 5.3e-154 548.1 372 72.6
CDE06G1646 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 6.9e-154 547.7 373 72.9
Hund00395 Selenicereus undatus HOM05D004984 ORTHO05D006508 6.9e-154 547.7 372 72.3
Gohir.D13G048100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.5e-153 546.6 372 72.3
Lsat_1_v5_gn_7_82880 Lactuca sativa HOM05D004984 ORTHO05D006508 3.4e-153 545.4 366 74.6
Gohir.A13G049600 Gossypium hirsutum HOM05D004984 ORTHO05D006508 7.7e-153 544.3 365 73.7
ECA236G3860 Erigeron canadensis HOM05D004984 ORTHO05D006508 1.7e-152 543.1 340 77.4
Ciclev10028425m.g Citrus clementina HOM05D004984 ORTHO05D006508 2.9e-152 542.3 383 70.5
PSO532G0022 Papaver somniferum HOM05D004984 ORTHO05D006508 8.5e-152 540.8 376 71.8
Nn1g05667 Nelumbo nucifera HOM05D004984 ORTHO05D006508 1.1e-151 540.4 374 72.7
PSO541G0041 Papaver somniferum HOM05D004984 ORTHO05D006508 3.2e-151 538.9 376 71.5
HanXRQChr01g0009891 Helianthus annuus HOM05D004984 ORTHO05D006508 4.2e-151 538.5 340 78.2
SGA_v2.0_scaffold32G12944 Striga asiatica HOM05D004984 ORTHO05D006508 7.2e-151 537.7 452 61.5
DCAR_021894 Daucus carota HOM05D004984 ORTHO05D006508 2.1e-150 536.2 368 72.6
ATR0800G083 Amborella trichopoda HOM05D004984 ORTHO05D006508 6.1e-150 534.6 361 72.9
Potri.009G079600 Populus trichocarpa HOM05D004984 ORTHO05D006508 7.9e-150 534.3 378 70.9
Aqoxy6G00646 Aquilegia oxysepala HOM05D004984 ORTHO05D006508 1.0e-149 533.9 374 70.9
Oeu010515.3 Olea europaea HOM05D004984 ORTHO05D006508 3.9e-149 531.9 491 59.3
Potri.001G285300 Populus trichocarpa HOM05D004984 ORTHO05D006508 1.5e-148 530.0 378 69.8
VMungo0540G0195 Vigna mungo HOM05D004984 ORTHO05D006508 2.8e-147 525.8 368 71.7
TWI14G0615 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 3.7e-147 525.4 373 71.3
EL10Ac9g22123 Beta vulgaris HOM05D004984 ORTHO05D006508 4.8e-147 525.0 353 73.7
AT2G04305 Arabidopsis thaliana HOM05D004984 ORTHO05D006508 8.2e-147 524.2 362 73.2
Sabra09G0061600 Salix brachista HOM05D004984 ORTHO05D006508 1.4e-146 523.5 395 67.8
Glyma.15G060000 Glycine max HOM05D004984 ORTHO05D006508 1.8e-146 523.1 385 69.9
Phvul.006G199900 Phaseolus vulgaris HOM05D004984 ORTHO05D006508 5.3e-146 521.5 385 68.6
Ca_00179_v3 Cicer arietinum L. HOM05D004984 ORTHO05D006508 1.2e-145 520.4 386 69.2
TWI59G1371 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 1.2e-145 520.4 373 70.2
Glyma.13G254800 Glycine max HOM05D004984 ORTHO05D006508 3.4e-145 518.8 385 69.4
Psat1g212920 Pisum sativum HOM05D004984 ORTHO05D006508 2.2e-144 516.2 385 68.8
Ah.01g007220 Amaranthus hybridus HOM05D004984 ORTHO05D006508 8.5e-144 514.2 377 67.9
Medtr2g010000 Medicago truncatula HOM05D004984 ORTHO05D006508 9.4e-143 510.8 386 68.4
TPR.G32658 Trifolium pratense HOM05D004984 ORTHO05D006508 9.4e-143 510.8 385 68.6
Nn5g29788 Nelumbo nucifera HOM05D004984 ORTHO05D006508 2.1e-142 509.6 357 71.4
Lj6g0001628 Lotus japonicus HOM05D004984 ORTHO05D006508 3.6e-142 508.8 385 66.5
Nitab4.5_0000088g0020 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.8e-141 506.5 281 89.3
unitig_744.g24196 Utricularia gibba HOM05D004984 ORTHO05D006508 1.8e-141 506.5 355 69.0
AUR62030922 Chenopodium quinoa HOM05D004984 ORTHO05D006508 1.5e-140 503.4 345 71.6
AUR62027083 Chenopodium quinoa HOM05D004984 ORTHO05D006508 1.7e-139 500.0 345 71.0
Lalb_Chr15g0090281 Lupinus albus HOM05D004984 ORTHO05D006508 8.2e-139 497.7 388 66.2
Sabra16G0177800 Salix brachista HOM05D004984 ORTHO05D006508 4.1e-138 495.4 330 74.2
SEGI_07926 Sequoiadendron giganteum HOM05D004984 ORTHO05D006508 5.3e-138 495.0 379 66.5
MBI16_g10445_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.6e-137 493.4 359 68.2
Nitab4.5_0004008g0090 Nicotiana tabacum HOM05D004984 ORTHO05D006508 3.5e-137 492.3 362 68.8
unitig_0.g892 Utricularia gibba HOM05D000062 ORTHO05D000043 2.9e-136 489.2 349 67.9
HPP92_016673 Vanilla planifolia HOM05D004984 ORTHO05D006508 2.7e-129 466.1 347 66.6
HPP92_019493 Vanilla planifolia HOM05D004984 ORTHO05D006508 2.7e-129 466.1 337 68.0
Cpa.g.sc20.35 Carica papaya HOM05D004984 ORTHO05D006508 2.2e-128 463.0 323 71.2
SalBow6G7210 Salvia bowleyana HOM05D004984 ORTHO05D006508 2.2e-128 463.0 345 67.2
Hma1.2p1_0383F.1_g140540 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 1.1e-127 460.7 331 70.7
Mapoly0036s0130 Marchantia polymorpha HOM05D004984 ORTHO05D006508 4.7e-118 428.7 348 60.9
Pp3c9_6010 Physcomitrium patens HOM05D004984 ORTHO05D006508 5.9e-113 411.8 386 56.2
Pp3c15_5630 Physcomitrium patens HOM05D004984 ORTHO05D006508 1.7e-112 410.2 360 58.3
AagrBONN_evm.TU.Sc2ySwM_368.1921 Anthoceros agrestis HOM05D004984 ORTHO05D006508 2.6e-108 396.4 356 58.4
MBI16_g42150_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 7.0e-106 388.3 284 67.3
Os08g0130000 Oryza sativa ssp. japonica HOM05D004984 ORTHO05D006508 7.8e-105 384.8 353 55.8
MBI16_g43037_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 2.1e-102 376.7 267 69.3
CDE04G0284 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 7.8e-89 331.6 310 57.4
Lalb_Chr18g0060331 Lupinus albus HOM05D004984 ORTHO05D006508 2.2e-83 313.5 231 68.0
Nitab4.5_0002290g0050 Nicotiana tabacum HOM05D004984 ORTHO05D006508 4.3e-79 299.3 250 65.6
MBI16_g10446_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D243960 6.4e-67 258.8 366 44.0
Zm00001eb173240 Zea mays HOM05D004984 ORTHO05D006508 3.2e-58 229.9 172 64.0
Haze_10397 Corylus avellana HOM05D004984 ORTHO05D006508 6.9e-45 185.7 105 86.7
Cpa.g.sc20.38 Carica papaya HOM05D004984 ORTHO05D006508 3.4e-44 183.3 127 72.4
Lalb_Chr18g0060321 Lupinus albus HOM05D004984 ORTHO05D006508 3.7e-38 163.3 112 71.4
DCAR_029279 Daucus carota HOM05D004984 ORTHO05D006508 2.8e-30 137.1 96 69.8
HanXRQChr09g0257011 Helianthus annuus HOM05D004984 ORTHO05D029932 3.8e-27 126.7 93 72.0
BolC3t20704H Brassica oleracea HOM05D004984 ORTHO05D040812 1.6e-25 121.3 89 66.3
C03p84240 Brassica napus HOM05D004984 ORTHO05D040812 3.9e-24 116.7 89 66.3
MBI16_g47408_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D029932 6.1e-17 92.8 188 35.6
HanXRQChr14g0429701 Helianthus annuus HOM05D004984 ORTHO05D029932 4.8e-14 83.2 56 75.0
Nn4g23949 Nelumbo nucifera HOM05D004984 ORTHO05D006508 1.3e-11 75.1 56 62.5
Lsat_1_v5_gn_7_73760 Lactuca sativa HOM05D004984 ORTHO05D006508 2.8e-06 57.4 39 71.8


User provided reference genes

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