Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g068580.4 Solanum lycopersicum HOM05D006934 ORTHO05D008743 0.0e+00 1117.1 540 100.0
Sopen08g022340 Solanum pennellii HOM05D006934 ORTHO05D008743 4.0e-301 1037.3 507 98.0
CAN.G21.49 Capsicum annuum HOM05D006934 ORTHO05D008743 1.4e-272 942.6 515 88.0
PGSC0003DMG400029048 Solanum tuberosum HOM05D006934 ORTHO05D008743 5.2e-272 940.6 472 94.7
Nitab4.5_0006202g0030 Nicotiana tabacum HOM05D006934 ORTHO05D008743 1.0e-267 926.4 513 86.0
Nitab4.5_0000406g0060 Nicotiana tabacum HOM05D006934 ORTHO05D008743 9.5e-250 866.7 460 88.3
Dinv11656 Davidia involucrata HOM05D006934 ORTHO05D008743 1.4e-237 826.2 487 78.9
CSS0048576 Camellia sinensis var. sinensis HOM05D006934 ORTHO05D008743 2.0e-236 822.4 527 73.4
CSS0041678 Camellia sinensis var. sinensis HOM05D006934 ORTHO05D008743 2.7e-236 822.0 527 73.4
GSVIVG01035967001 Vitis vinifera HOM05D006934 ORTHO05D008743 4.6e-236 821.2 497 78.3
Rhsim02G0213000 Rhododendron simsii HOM05D006934 ORTHO05D008743 1.2e-233 813.1 511 75.1
Hma1.2p1_0706F.1_g207020 Hydrangea macrophylla HOM05D006934 ORTHO05D008743 4.0e-232 808.1 483 77.4
Cc08_g06990 Coffea canephora HOM05D006934 ORTHO05D008743 1.3e-230 803.1 486 76.5
Aqoxy5G03587 Aquilegia oxysepala HOM05D006934 ORTHO05D008743 4.9e-230 801.2 496 75.0
vmacro11241 Vaccinium macrocarpon HOM05D006934 ORTHO05D008743 1.1e-229 800.0 556 69.6
Prupe.1G393700 Prunus persica HOM05D006934 ORTHO05D008743 2.7e-228 795.4 513 74.5
Haze_21418 Corylus avellana HOM05D006934 ORTHO05D008743 3.9e-227 791.6 515 72.4
Actinidia10522 Actinidia chinensis HOM05D006934 ORTHO05D008743 1.5e-226 789.6 492 76.0
TAR626G1595 Trochodendron aralioides HOM05D006934 ORTHO05D008743 1.5e-226 789.6 506 72.7
MSTRG.25834 Avicennia marina HOM05D006934 ORTHO05D008743 2.5e-226 788.9 486 76.7
Potri.018G018700 Populus trichocarpa HOM05D006934 ORTHO05D008743 9.5e-226 786.9 499 72.9
Migut.A00351 Erythranthe guttata HOM05D006934 ORTHO05D008743 1.6e-225 786.2 510 73.7
Atru.chr7.2565 Acer truncatum HOM05D006934 ORTHO05D008743 2.8e-225 785.4 493 74.8
AUR62032410 Chenopodium quinoa HOM05D006934 ORTHO05D008743 3.6e-225 785.0 512 73.2
MD15G1040400 Malus domestica HOM05D006934 ORTHO05D008743 8.1e-225 783.9 504 72.8
Manes.03G008700 Manihot esculenta HOM05D006934 ORTHO05D008743 6.8e-224 780.8 489 75.1
EL10Ac2g02505 Beta vulgaris HOM05D006934 ORTHO05D008743 8.9e-224 780.4 512 72.5
Sabra18G0021400 Salix brachista HOM05D006934 ORTHO05D008743 8.9e-224 780.4 499 72.1
Ciclev10008002m.g Citrus clementina HOM05D006934 ORTHO05D008743 2.9e-222 775.4 514 71.6
ECA236G4849 Erigeron canadensis HOM05D006934 ORTHO05D008743 2.9e-222 775.4 486 73.5
Cfa013059 Carpinus fangiana HOM05D006934 ORTHO05D008743 3.7e-222 775.0 502 72.7
HanXRQChr06g0176741 Helianthus annuus HOM05D006934 ORTHO05D008743 8.3e-222 773.9 514 71.6
AUR62024810 Chenopodium quinoa HOM05D006934 ORTHO05D008743 1.1e-221 773.5 512 72.3
Cpa.g.sc127.37 Carica papaya HOM05D006934 ORTHO05D008743 1.4e-221 773.1 500 73.4
Lsat_1_v5_gn_8_82201 Lactuca sativa HOM05D006934 ORTHO05D008743 4.1e-221 771.5 486 73.7
PGR044G1250 Punica granatum HOM05D006934 ORTHO05D008743 7.1e-221 770.8 488 74.6
FvH4_2g41120 Fragaria vesca HOM05D006934 ORTHO05D008743 2.1e-220 769.2 489 74.2
Eucgr.C02612 Eucalyptus grandis HOM05D006934 ORTHO05D008743 1.7e-219 766.1 505 72.1
Psat5g033000 Pisum sativum HOM05D006934 ORTHO05D008743 1.7e-219 766.1 501 71.9
CDE02G1998 Ceratophyllum demersum HOM05D006934 ORTHO05D008743 2.3e-219 765.8 510 70.4
RcHm_v2.0_Chr6g0299421 Rosa chinensis HOM05D006934 ORTHO05D008743 3.9e-219 765.0 489 73.8
Lalb_Chr23g0268221 Lupinus albus HOM05D006934 ORTHO05D008743 5.1e-219 764.6 505 70.1
MBI15_g19327_MAGBIO Magnolia biondii HOM05D006934 ORTHO05D008743 5.1e-219 764.6 504 70.8
TPR.G1832 Trifolium pratense HOM05D006934 ORTHO05D008743 6.6e-219 764.2 504 70.2
Eucgr.C02611 Eucalyptus grandis HOM05D006934 ORTHO05D008743 2.5e-218 762.3 503 72.0
TWI34G0497 Tripterygium wilfordii HOM05D006934 ORTHO05D008743 3.3e-218 761.9 533 68.9
Thecc.09G015800 Theobroma cacao HOM05D006934 ORTHO05D008743 4.3e-218 761.5 514 71.4
FAN27G3133 Fragaria x ananassa HOM05D006934 ORTHO05D008743 7.3e-218 760.8 490 73.9
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 7.3e-218 760.8 482 73.4
Eucgr.C02525 Eucalyptus grandis HOM05D006934 ORTHO05D008743 9.5e-218 760.4 503 71.8
QL02p018881 Quercus lobata HOM05D006934 ORTHO05D008743 2.1e-217 759.2 517 69.6
Ca_15778_v3 Cicer arietinum L. HOM05D006934 ORTHO05D008743 6.2e-217 757.7 480 72.7
Duzib168G1051 Durio zibethinus HOM05D006934 ORTHO05D008743 1.4e-216 756.5 515 70.3
COL.COLO4_18949 Corchorus olitorius HOM05D006934 ORTHO05D008743 1.8e-216 756.1 511 69.5
Medtr3g105980 Medicago truncatula HOM05D006934 ORTHO05D008743 2.4e-216 755.7 499 70.5
CANSAT25G0127 Cannabis sativa HOM05D006934 ORTHO05D008743 4.0e-216 755.0 505 70.9
VMungo1309G2247 Vigna mungo HOM05D006934 ORTHO05D008743 8.9e-216 753.8 507 69.2
Gorai.001G038100 Gossypium raimondii HOM05D006934 ORTHO05D008743 2.0e-215 752.7 509 70.1
ATR0739G024 Amborella trichopoda HOM05D006934 ORTHO05D008743 2.6e-215 752.3 477 73.4
Lj1g0027414 Lotus japonicus HOM05D006934 ORTHO05D008743 3.4e-215 751.9 508 70.1
Gohir.D07G036200 Gossypium hirsutum HOM05D006934 ORTHO05D008743 5.8e-215 751.1 509 70.1
Phvul.009G087000 Phaseolus vulgaris HOM05D006934 ORTHO05D008743 5.8e-215 751.1 490 70.4
Glyma.06G061500 Glycine max HOM05D006934 ORTHO05D008743 4.9e-214 748.0 495 69.5
Glyma.04G060900 Glycine max HOM05D006934 ORTHO05D008743 3.2e-213 745.3 487 70.6
Os06g0649900 Oryza sativa ssp. japonica HOM05D006934 ORTHO05D008743 1.6e-212 743.0 483 70.0
arahy.Tifrunner.gnm1.ann1.XZ9AUI Arachis hypogaea HOM05D006934 ORTHO05D008743 6.0e-212 741.1 502 68.9
Hund02990 Selenicereus undatus HOM05D006934 ORTHO05D008743 6.0e-212 741.1 506 69.6
Lj7C734G21 Lonicera japonica HOM05D006934 ORTHO05D008743 1.3e-211 740.0 455 75.6
Eucgr.C02526 Eucalyptus grandis HOM05D006934 ORTHO05D008743 1.7e-211 739.6 477 73.8
HPP92_004696 Vanilla planifolia HOM05D006934 ORTHO05D008743 2.1e-209 732.6 485 70.7
PSO017G3817 Papaver somniferum HOM05D006934 ORTHO05D008743 3.6e-209 731.9 485 69.3
PSO170G6733 Papaver somniferum HOM05D006934 ORTHO05D008743 2.2e-206 722.6 485 68.9
Ah.12g060980 Amaranthus hybridus HOM05D006934 ORTHO05D008743 1.6e-204 716.5 455 73.2
Gorai.010G118800 Gossypium raimondii HOM05D006934 ORTHO05D008743 1.6e-204 716.5 514 66.5
BcaNung03200 Brassica carinata HOM05D006934 ORTHO05D008743 2.7e-204 715.7 496 68.5
Aqoxy2G03820 Aquilegia oxysepala HOM05D006934 ORTHO05D008743 1.7e-203 713.0 501 66.7
Sp2g22420 Schrenkiella parvula HOM05D006934 ORTHO05D008743 1.7e-203 713.0 483 69.8
CiPaw.07G230200 Carya illinoinensis HOM05D006934 ORTHO05D008743 2.3e-203 712.6 461 72.2
CsaV3_4G036540 Cucumis sativus L. HOM05D006934 ORTHO05D008743 2.3e-203 712.6 515 64.9
Gohir.D06G103800 Gossypium hirsutum HOM05D006934 ORTHO05D008743 8.7e-203 710.7 509 67.0
AL6G36750 Arabidopsis lyrata HOM05D006934 ORTHO05D008743 2.1e-201 706.1 474 70.5
Sed0006653 Sechium edule HOM05D006934 ORTHO05D008743 2.1e-201 706.1 513 64.9
THA.LOC104799020 Tarenaya hassleriana HOM05D006934 ORTHO05D008743 4.8e-201 704.9 539 63.1
SEGI_09290 Sequoiadendron giganteum HOM05D006934 ORTHO05D008743 1.1e-200 703.7 494 66.2
BraA06t26511Z Brassica rapa HOM05D006934 ORTHO05D008743 1.8e-200 703.0 481 69.0
C07p42720 Brassica napus HOM05D006934 ORTHO05D008743 9.0e-200 700.7 481 69.0
BcaNung02296 Brassica carinata HOM05D006934 ORTHO05D008743 1.2e-199 700.3 481 68.8
BolC7t44802H Brassica oleracea HOM05D006934 ORTHO05D008743 1.2e-199 700.3 481 68.8
MELO3C016958.2 Cucumis melo HOM05D006934 ORTHO05D008743 1.2e-199 700.3 512 64.6
Aa31LG11G4330 Aethionema arabicum HOM05D006934 ORTHO05D008743 1.1e-197 693.7 499 66.5
Nn2g12390 Nelumbo nucifera HOM05D006934 ORTHO05D008743 3.7e-193 678.7 479 68.1
A06p35860 Brassica napus HOM05D006934 ORTHO05D008743 1.8e-192 676.4 528 63.1
ClCG05G016280 Citrullus lanatus HOM05D006934 ORTHO05D008743 2.4e-192 676.0 509 63.1
BcaNung06716 Brassica carinata HOM05D006934 ORTHO05D008743 9.6e-186 654.1 481 65.9
Pp3c3_35450 Physcomitrium patens HOM05D006934 ORTHO05D008743 5.9e-175 618.2 477 60.0
arahy.Tifrunner.gnm1.ann1.G1SIKM Arachis hypogaea HOM05D006934 ORTHO05D008743 3.0e-171 605.9 502 59.6
Peaxi162Scf00822g00212 Petunia axillaris HOM05D006934 ORTHO05D008743 4.3e-170 602.1 358 79.6
Thhalv10004366m.g Eutrema salsugineum HOM05D006934 ORTHO05D008743 2.5e-157 559.7 386 70.2
CARHR188390 Cardamine hirsuta HOM05D006934 ORTHO05D008743 5.3e-152 542.0 370 70.3
Sc09g0010640 Simmondsia chinensis HOM05D006934 ORTHO05D008743 4.7e-148 528.9 360 70.8
Nn8g39897 Nelumbo nucifera HOM05D006934 ORTHO05D008743 3.4e-138 496.1 366 63.1
Eucgr.C02635 Eucalyptus grandis HOM05D006934 ORTHO05D008743 3.0e-118 429.9 497 48.3
Gohir.A07G032950 Gossypium hirsutum HOM05D006934 ORTHO05D008743 7.5e-114 415.2 302 65.2
Gohir.A06G101800 Gossypium hirsutum HOM05D006934 ORTHO05D008743 8.3e-113 411.8 304 63.2
Zm00001eb275030 Zea mays HOM05D006934 ORTHO05D008743 5.6e-101 372.5 237 68.8
Zm00001eb334470 Zea mays HOM05D006934 ORTHO05D008743 2.1e-92 344.0 214 68.7
QL02p018870 Quercus lobata HOM05D006934 ORTHO05D008743 2.1e-76 290.8 183 73.2
Gohir.A06G101702 Gossypium hirsutum HOM05D006934 ORTHO05D008743 1.8e-70 271.2 178 73.6
SGA_v2.0_scaffold22G09909 Striga asiatica HOM05D006934 ORTHO05D008743 2.7e-63 247.3 168 70.2
Zm00001eb337170 Zea mays HOM05D006934 ORTHO05D008743 1.3e-60 238.4 148 69.6
Lsat_1_v5_gn_5_171641 Lactuca sativa HOM05D006934 ORTHO05D008743 9.1e-27 125.9 104 64.4
Cfa012861 Carpinus fangiana HOM05D006934 ORTHO05D008743 3.3e-16 90.9 51 72.5
Lsat_1_v5_gn_2_108800 Lactuca sativa HOM05D006934 ORTHO05D003550 2.6e-13 81.3 79 53.2
SEGI_28803 Sequoiadendron giganteum HOM05D006934 ORTHO05D008743 1.6e-10 72.0 77 49.4


User provided reference genes

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