Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 0.0e+00 1122.8 530 100.0
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 4.5e-305 1050.4 499 99.2
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 3.0e-293 1011.1 496 96.2
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 1.1e-258 896.3 506 84.0
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 1.9e-258 895.6 502 85.7
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 6.2e-246 854.0 503 83.3
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 2.1e-238 828.9 547 75.7
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 5.5e-218 761.1 468 75.2
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 1.0e-216 756.9 445 78.0
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 8.8e-216 753.8 457 75.3
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 8.8e-216 753.8 457 75.3
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 8.2e-214 747.3 492 69.5
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 9.1e-213 743.8 515 68.2
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 2.0e-212 742.7 484 70.5
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 2.6e-212 742.3 465 73.3
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 4.5e-212 741.5 466 71.7
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 1.0e-211 740.3 507 67.7
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 5.0e-211 738.0 470 72.8
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 1.9e-210 736.1 426 76.5
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 2.5e-210 735.7 446 74.0
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 7.2e-210 734.2 446 74.2
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 7.2e-210 734.2 441 76.0
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 2.7e-209 732.3 446 73.5
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 3.6e-209 731.9 437 75.5
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 6.1e-209 731.1 450 73.8
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 1.8e-208 729.6 466 71.5
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 3.9e-208 728.4 449 74.4
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 2.6e-207 725.7 444 75.2
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 3.3e-207 725.3 438 74.7
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 4.4e-207 724.9 448 73.2
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 5.7e-207 724.5 458 72.5
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 7.4e-207 724.2 463 71.1
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 9.7e-207 723.8 444 73.6
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 1.3e-206 723.4 440 73.4
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 1.7e-206 723.0 481 69.2
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 2.8e-206 722.2 444 73.9
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 4.8e-206 721.5 469 69.3
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 4.8e-206 721.5 428 75.0
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 1.1e-205 720.3 467 70.9
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 3.1e-205 718.8 428 75.7
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 7.0e-205 717.6 436 73.6
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 7.0e-205 717.6 468 70.9
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 9.1e-205 717.2 455 71.2
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 1.2e-204 716.8 433 74.4
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 1.6e-204 716.5 450 72.9
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 3.5e-204 715.3 428 74.1
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 4.5e-204 714.9 466 70.0
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 1.0e-203 713.8 457 71.6
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 3.8e-203 711.8 481 67.6
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 3.8e-203 711.8 426 74.4
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 3.8e-203 711.8 445 71.7
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 3.8e-203 711.8 467 68.5
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 5.0e-203 711.4 426 74.2
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 6.5e-203 711.1 443 72.9
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 1.9e-202 709.5 469 68.7
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 3.2e-202 708.8 467 69.0
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 4.2e-202 708.4 493 67.1
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 2.1e-201 706.1 424 74.8
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 3.6e-201 705.3 429 73.7
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 3.6e-201 705.3 428 73.8
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 1.8e-200 703.0 445 70.8
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 4.0e-200 701.8 445 70.8
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 6.7e-200 701.0 461 71.4
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 8.8e-200 700.7 433 72.1
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 7.5e-199 697.6 428 73.1
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 7.5e-199 697.6 441 71.2
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 9.7e-199 697.2 435 72.2
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 1.7e-198 696.4 452 70.4
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 6.3e-198 694.5 467 67.5
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 1.1e-197 693.7 452 69.9
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 1.8e-197 693.0 466 68.2
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 5.3e-197 691.4 449 70.8
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 2.0e-196 689.5 429 70.4
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 3.5e-196 688.7 473 66.4
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 5.9e-196 688.0 469 67.4
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 1.7e-195 686.4 464 67.2
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 2.2e-195 686.0 473 66.2
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 2.9e-195 685.6 505 62.0
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 7.2e-194 681.0 462 66.7
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 9.4e-194 680.6 458 67.2
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 1.2e-193 680.2 468 66.7
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 1.2e-193 680.2 468 66.7
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 4.7e-193 678.3 469 66.5
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 4.7e-193 678.3 469 66.5
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 2.3e-192 676.0 480 66.7
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 2.3e-192 676.0 462 68.2
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 2.6e-191 672.5 511 62.6
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 2.6e-191 672.5 444 68.0
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 2.6e-191 672.5 481 62.6
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 1.3e-190 670.2 426 69.7
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 9.1e-189 664.1 480 65.6
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 2.5e-186 656.0 475 65.3
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 4.0e-184 648.7 462 67.1
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 1.7e-182 643.3 518 58.9
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 5.4e-181 638.3 379 75.5
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 5.4e-181 638.3 395 73.2
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 5.6e-178 628.2 373 75.1
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 2.0e-175 619.8 443 65.0
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 2.4e-173 612.8 381 71.7
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 2.4e-173 612.8 381 71.7
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 3.2e-173 612.5 460 63.9
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 6.8e-168 594.7 366 73.5
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 4.4e-167 592.0 344 76.2
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 8.3e-166 587.8 428 63.3
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 1.4e-165 587.0 381 70.1
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 3.0e-163 579.3 470 58.1
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 2.1e-161 573.2 428 61.9
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 4.0e-160 568.9 418 61.2
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 6.8e-160 568.2 427 58.8
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 7.1e-157 558.1 409 65.8
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 2.1e-156 556.6 326 73.9
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 3.0e-155 552.7 435 61.6
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 2.3e-152 543.1 519 52.2
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 8.6e-147 524.6 433 54.5
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 2.4e-144 516.5 397 57.2
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 6.9e-136 488.4 322 66.8
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 1.5e-135 487.3 436 56.9
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 7.6e-135 485.0 427 56.2
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 2.9e-126 456.4 271 73.4
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 5.8e-119 432.2 260 74.6
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 8.7e-107 391.7 467 41.8
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 4.6e-100 369.4 219 74.4
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 5.3e-80 302.8 185 74.1
Lj7A704G81 Lonicera japonica HOM05D005302 ORTHO05D006422 7.5e-74 282.3 162 78.4
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 1.1e-72 278.5 429 39.2
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 4.9e-65 253.1 372 38.4
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 7.8e-63 245.7 149 72.5
Hma1.2p1_0393F.1_g143090 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 4.1e-56 223.4 184 60.3
Glyma.04G082300 Glycine max HOM05D005302 ORTHO05D006422 7.8e-55 219.2 182 61.0
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 2.5e-53 214.2 110 81.8
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 1.1e-43 182.2 119 69.7
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 2.3e-43 181.0 149 50.3
SEGI_07805 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 6.0e-39 166.4 143 57.3
Sabra18G0041600 Salix brachista HOM05D005302 ORTHO05D006422 6.6e-38 162.9 112 66.1
arahy.Tifrunner.gnm1.ann1.B6YE6K Arachis hypogaea HOM05D005302 ORTHO05D006422 2.2e-33 147.9 184 45.1
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 4.9e-33 146.7 186 43.5
CDE05G1694 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.1e-19 102.4 61 68.9
Sabra18G0041700 Salix brachista HOM05D005302 ORTHO05D006422 8.4e-17 92.8 61 67.2
CDE02G1858 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.4e-08 65.5 179 32.4
BcaC09g52073 Brassica carinata HOM05D002602 ORTHO05D002661 2.3e-06 58.2 41 58.5
Mapoly0099s0019 Marchantia polymorpha HOM05D015932 ORTHO05D017831 5.1e-06 57.0 216 26.9


User provided reference genes

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