Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 2.9e-210 734.9 360 100.0
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 1.7e-207 725.7 358 98.9
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 2.9e-202 708.4 360 95.6
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 2.8e-173 612.1 352 81.5
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 1.4e-172 609.8 351 82.1
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 1.5e-171 606.3 351 81.8
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 4.3e-166 588.2 305 91.5
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 1.1e-164 583.6 354 76.6
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 3.1e-164 582.0 355 76.1
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 1.7e-162 576.2 351 77.5
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 8.4e-162 573.9 351 76.6
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 2.1e-160 569.3 386 71.2
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 2.1e-160 569.3 373 74.0
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 2.7e-160 568.9 349 76.2
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 1.8e-159 566.2 349 75.6
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 3.0e-159 565.5 355 76.1
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 5.1e-159 564.7 355 75.5
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 1.1e-158 563.5 347 76.9
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 1.9e-158 562.8 349 75.4
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 9.7e-158 560.5 349 74.2
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 3.7e-157 558.5 350 75.1
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 2.4e-156 555.8 354 74.6
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 2.4e-156 555.8 349 74.5
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 2.6e-155 552.4 346 73.7
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 5.9e-155 551.2 346 74.6
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 5.9e-155 551.2 346 74.6
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 1.7e-154 549.7 358 72.9
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 1.7e-154 549.7 349 74.5
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 3.8e-154 548.5 349 74.2
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 8.5e-154 547.4 349 73.1
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 8.5e-154 547.4 348 75.6
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.4e-153 546.6 351 72.6
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 2.5e-153 545.8 350 72.9
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 3.2e-153 545.4 351 72.6
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 4.2e-153 545.0 347 73.8
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 5.5e-153 544.7 353 72.5
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 9.4e-153 543.9 349 73.1
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 2.7e-152 542.3 350 74.3
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.4e-151 540.0 350 73.4
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 3.0e-151 538.9 357 72.3
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 5.1e-151 538.1 350 72.6
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 5.1e-151 538.1 355 70.7
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 6.7e-151 537.7 349 73.6
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 6.7e-151 537.7 350 72.6
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 6.7e-151 537.7 350 72.6
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 8.8e-151 537.3 350 74.3
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 9.7e-150 533.9 333 75.4
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 6.3e-149 531.2 364 69.5
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 1.4e-148 530.0 350 73.1
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 1.8e-148 529.6 348 72.7
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 1.8e-148 529.6 349 71.9
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 6.9e-148 527.7 348 71.0
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 6.9e-148 527.7 350 72.3
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 1.5e-147 526.6 351 70.7
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 3.4e-147 525.4 417 62.8
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 1.7e-146 523.1 348 70.1
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 2.2e-146 522.7 357 69.7
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 2.9e-146 522.3 348 70.4
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 2.9e-146 522.3 348 71.6
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 2.5e-145 519.2 350 72.3
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 4.2e-145 518.5 358 69.0
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.2e-144 516.9 358 70.4
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 3.6e-144 515.4 354 69.5
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 6.1e-144 514.6 350 70.9
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 2.3e-143 512.7 349 71.1
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 2.3e-143 512.7 351 69.5
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 3.0e-143 512.3 356 68.3
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 6.7e-143 511.1 355 69.0
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 6.7e-143 511.1 353 68.6
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 2.0e-142 509.6 347 69.7
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 4.4e-142 508.4 378 65.9
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 4.4e-142 508.4 354 68.9
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 1.7e-141 506.5 349 70.5
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 2.2e-141 506.1 346 70.2
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.8e-141 505.8 303 77.2
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 6.3e-141 504.6 354 68.4
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.1e-140 503.8 334 72.2
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 1.2e-139 500.4 372 65.1
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 3.5e-139 498.8 353 67.7
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 1.3e-138 496.9 350 67.7
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 3.8e-138 495.4 321 73.2
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 3.2e-137 492.3 350 68.3
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 4.2e-137 491.9 305 74.8
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 2.1e-136 489.6 353 64.6
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 3.6e-136 488.8 349 66.2
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 1.0e-135 487.3 360 66.1
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 6.7e-135 484.6 355 64.2
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 6.7e-135 484.6 348 64.9
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 1.1e-134 483.8 352 64.5
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 1.1e-134 483.8 353 64.6
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 3.3e-134 482.3 355 63.9
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 4.4e-134 481.9 315 72.7
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 5.7e-134 481.5 356 63.8
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 7.4e-134 481.1 349 64.8
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 2.8e-133 479.2 276 80.8
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.1e-132 477.2 303 73.6
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 1.4e-132 476.9 349 63.3
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 3.1e-132 475.7 354 61.9
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 3.8e-130 468.8 345 62.9
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 3.8e-130 468.8 353 62.6
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 6.5e-130 468.0 355 61.7
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 8.5e-130 467.6 350 64.0
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.5e-129 466.1 338 67.8
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 4.2e-129 465.3 361 62.9
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 1.2e-128 463.8 248 89.5
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 1.2e-128 463.8 312 70.2
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 1.6e-128 463.4 333 65.5
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 4.0e-127 458.8 263 78.7
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 3.4e-126 455.7 327 66.7
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 3.4e-126 455.7 328 66.5
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 1.7e-125 453.4 304 68.1
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 2.2e-125 453.0 330 63.9
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 5.0e-122 441.8 329 66.0
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 1.2e-120 437.2 348 60.3
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 4.4e-118 428.7 328 62.8
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 8.9e-111 404.4 355 57.5
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 5.4e-108 395.2 250 70.0
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 1.7e-106 390.2 211 85.8
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 1.7e-106 390.2 237 76.8
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 2.9e-106 389.4 477 44.2
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 5.0e-106 388.7 383 50.1
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 9.5e-105 384.4 380 52.6
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 4.0e-103 379.0 287 68.3
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 1.3e-101 374.0 380 50.5
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 1.7e-101 373.6 326 58.6
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 1.4e-100 370.5 383 53.3
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 4.1e-100 369.0 221 77.4
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 1.6e-99 367.1 249 69.9
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 3.5e-99 365.9 251 70.1
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 5.6e-97 358.6 239 70.3
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 8.9e-95 351.3 360 49.2
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 2.0e-94 350.1 222 76.6
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.7e-93 347.1 408 44.9
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 6.4e-93 345.1 348 52.0
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 3.2e-92 342.8 362 48.9
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 4.6e-91 339.0 290 55.9
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 1.1e-89 334.3 253 64.0
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 4.7e-88 328.9 292 58.9
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 8.1e-80 301.6 302 52.6
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 5.2e-79 298.9 192 67.7
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 9.9e-78 294.7 193 73.6
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 1.4e-76 290.8 193 71.0
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 1.9e-76 290.4 218 66.1
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 3.3e-73 279.6 275 46.9
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 1.3e-72 277.7 330 48.5
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 5.3e-71 272.3 193 69.9
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 1.8e-63 247.3 200 61.5
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 2.6e-62 243.4 336 47.3
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 2.1e-59 233.8 134 78.4
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 2.3e-50 203.8 159 62.3
Hund03408 Selenicereus undatus HOM05D004081 ORTHO05D004935 3.0e-50 203.4 126 74.6
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 5.3e-47 192.6 347 32.9
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 2.0e-46 190.7 336 38.7
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 5.0e-45 186.0 212 50.9
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 1.1e-41 174.9 116 69.8
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 2.0e-38 164.1 223 36.8
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 2.6e-38 163.7 302 30.1
AL6G37600 Arabidopsis lyrata HOM05D004081 ORTHO05D004935 2.2e-37 160.6 156 49.4
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 7.9e-35 152.1 89 74.2
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 9.7e-25 118.6 207 32.4
Oeu014640.1 Olea europaea HOM05D004081 ORTHO05D025646 2.1e-19 100.9 78 64.1
HPP92_021483 Vanilla planifolia HOM05D004081 ORTHO05D004935 1.0e-18 98.6 68 64.7
ATR0241G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 2.4e-15 87.4 81 53.1
Zm00001eb357480 Zea mays HOM05D002669 ORTHO05D004935 1.0e-13 82.0 69 55.1
Zm00001eb288810 Zea mays HOM05D002669 ORTHO05D004935 2.2e-13 80.9 69 55.1
Cpa.g.sc7.250 Carica papaya HOM05D002779 ORTHO05D003074 5.0e-13 79.7 49 73.5
Ciclev10010051m.g Citrus clementina HOM05D004081 ORTHO05D004935 2.7e-11 73.9 72 50.0
PGSC0003DMG400019844 Solanum tuberosum HOM05D004081 ORTHO05D004935 8.0e-11 72.4 40 82.5
Hund03407 Selenicereus undatus HOM05D004081 ORTHO05D025646 3.7e-08 63.5 49 59.2
MD15G1096200 Malus domestica HOM05D004081 ORTHO05D025646 1.2e-06 58.5 47 61.7
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 2.0e-06 57.8 40 65.0
MBI16_g01586_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 7.7e-06 55.8 40 62.5


User provided reference genes

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