Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g068350.3 Solanum lycopersicum HOM05D005681 ORTHO05D007274 5.5e-170 600.9 307 100.0
Sopen08g022200 Solanum pennellii HOM05D005681 ORTHO05D007274 4.8e-166 587.8 310 97.7
PGSC0003DMG400010842 Solanum tuberosum HOM05D005681 ORTHO05D007274 9.4e-162 573.5 310 95.2
Nitab4.5_0000052g0240 Nicotiana tabacum HOM05D005681 ORTHO05D007274 3.5e-156 555.1 307 92.5
Nitab4.5_0011506g0010 Nicotiana tabacum HOM05D005681 ORTHO05D007274 2.5e-154 548.9 307 91.5
CAN.G21.34 Capsicum annuum HOM05D005681 ORTHO05D007274 3.4e-151 538.5 310 87.7
Peaxi162Scf00523g00017 Petunia axillaris HOM05D005681 ORTHO05D007274 3.8e-147 525.0 305 87.2
Cc08_g09110 Coffea canephora HOM05D005681 ORTHO05D007274 6.6e-131 471.1 305 77.4
Dinv30262 Davidia involucrata HOM05D005681 ORTHO05D007274 2.9e-126 455.7 305 76.1
CiPaw.08G024200 Carya illinoinensis HOM05D005681 ORTHO05D007274 7.3e-122 441.0 307 73.3
Gorai.010G110300 Gossypium raimondii HOM05D005681 ORTHO05D007274 2.1e-121 439.5 305 72.1
Hma1.2p1_0140F.1_g063453 Hydrangea macrophylla HOM05D005681 ORTHO05D007274 6.2e-121 438.0 305 73.1
Hma1.2p1_0140F.1_g063456 Hydrangea macrophylla HOM05D005681 ORTHO05D007274 6.2e-121 438.0 305 73.1
Duzib150G0332 Durio zibethinus HOM05D005681 ORTHO05D007274 1.8e-120 436.4 305 73.1
GSVIVG01035659001 Vitis vinifera HOM05D005681 ORTHO05D007274 2.3e-120 436.0 303 73.6
SalBow4G0279 Salvia bowleyana HOM05D005681 ORTHO05D007274 3.1e-120 435.6 305 72.1
Ciclev10009066m.g Citrus clementina HOM05D005681 ORTHO05D007274 4.0e-120 435.3 306 71.9
Lj1g0012145 Lotus japonicus HOM05D005681 ORTHO05D007274 4.0e-120 435.3 305 72.5
Gohir.A05G047800 Gossypium hirsutum HOM05D005681 ORTHO05D007274 6.8e-120 434.5 305 70.5
Dinv14236 Davidia involucrata HOM05D005681 ORTHO05D007274 1.5e-119 433.3 306 72.5
TWI32G1178 Tripterygium wilfordii HOM05D005681 ORTHO05D007274 2.0e-119 433.0 306 73.2
Gorai.009G051200 Gossypium raimondii HOM05D005681 ORTHO05D007274 2.6e-119 432.6 305 70.2
Lsat_1_v5_gn_5_33341 Lactuca sativa HOM05D005681 ORTHO05D007274 3.4e-119 432.2 306 70.9
Gohir.A06G095700 Gossypium hirsutum HOM05D005681 ORTHO05D007274 4.4e-119 431.8 305 71.5
MSTRG.25900 Avicennia marina HOM05D005681 ORTHO05D007274 5.8e-119 431.4 305 73.1
PGR044G0773 Punica granatum HOM05D005681 ORTHO05D007274 5.8e-119 431.4 305 69.5
CSS0039623 Camellia sinensis var. sinensis HOM05D005681 ORTHO05D007274 1.7e-118 429.9 305 72.5
Glyma.04G080900 Glycine max HOM05D005681 ORTHO05D007274 2.2e-118 429.5 305 72.8
Gohir.D05G049900 Gossypium hirsutum HOM05D005681 ORTHO05D007274 2.9e-118 429.1 305 69.8
SGA_v2.0_scaffold243G44291 Striga asiatica HOM05D005681 ORTHO05D007274 6.4e-118 427.9 321 69.5
THA.LOC104803765 Tarenaya hassleriana HOM05D005681 ORTHO05D007274 6.4e-118 427.9 307 70.0
Migut.A00229 Erythranthe guttata HOM05D005681 ORTHO05D007274 1.1e-117 427.2 307 69.1
Actinidia13315 Actinidia chinensis HOM05D005681 ORTHO05D007274 1.9e-117 426.4 308 71.8
Glyma.06G082600 Glycine max HOM05D005681 ORTHO05D007274 1.9e-117 426.4 305 71.8
Manes.03G061300 Manihot esculenta HOM05D005681 ORTHO05D007274 1.9e-117 426.4 302 70.5
TAR626G1886 Trochodendron aralioides HOM05D005681 ORTHO05D007274 2.4e-117 426.0 305 71.1
ClCG08G012350 Citrullus lanatus HOM05D005681 ORTHO05D007274 1.2e-116 423.7 303 71.6
MELO3C011155.2 Cucumis melo HOM05D005681 ORTHO05D007274 4.6e-116 421.8 293 73.0
Atru.chr7.2148 Acer truncatum HOM05D005681 ORTHO05D007274 6.0e-116 421.4 305 70.5
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 6.0e-116 421.4 311 68.8
QL12p029589 Quercus lobata HOM05D005681 ORTHO05D007274 6.0e-116 421.4 305 69.5
Actinidia31229 Actinidia chinensis HOM05D005681 ORTHO05D007274 7.8e-116 421.0 306 69.6
Thecc.09G041100 Theobroma cacao HOM05D005681 ORTHO05D007274 1.0e-115 420.6 305 70.5
TWI34G0866 Tripterygium wilfordii HOM05D005681 ORTHO05D007274 1.7e-115 419.9 294 71.8
Psat0s2259g0040 Pisum sativum HOM05D005681 ORTHO05D007274 3.0e-115 419.1 302 70.5
Ca_15613_v3 Cicer arietinum L. HOM05D005681 ORTHO05D007274 3.9e-115 418.7 305 70.8
AL7G19000 Arabidopsis lyrata HOM05D005681 ORTHO05D007274 5.1e-115 418.3 308 69.8
VMungo1309G2636 Vigna mungo HOM05D005681 ORTHO05D007274 5.1e-115 418.3 307 70.0
arahy.Tifrunner.gnm1.ann1.M4G12U Arachis hypogaea HOM05D005681 ORTHO05D007274 6.6e-115 417.9 305 68.5
EL10Ac2g04057 Beta vulgaris HOM05D005681 ORTHO05D007274 8.6e-115 417.5 306 69.6
Lalb_Chr08g0243221 Lupinus albus HOM05D005681 ORTHO05D007274 2.5e-114 416.0 305 70.2
arahy.Tifrunner.gnm1.ann1.Z4VD8H Arachis hypogaea HOM05D005681 ORTHO05D007274 4.3e-114 415.2 305 68.5
AUR62009315 Chenopodium quinoa HOM05D005681 ORTHO05D007274 4.7e-113 411.8 306 68.6
MD15G1096600 Malus domestica HOM05D005681 ORTHO05D007274 8.1e-113 411.0 290 70.3
Phvul.009G107000 Phaseolus vulgaris HOM05D005681 ORTHO05D007274 1.4e-112 410.2 301 70.4
Nn3g18081 Nelumbo nucifera HOM05D005681 ORTHO05D007274 2.3e-112 409.5 297 69.4
Sc23g0005990 Simmondsia chinensis HOM05D005681 ORTHO05D007274 3.1e-112 409.1 294 69.0
Medtr3g110075 Medicago truncatula HOM05D005681 ORTHO05D007274 5.2e-112 408.3 303 71.0
AT4G32750 Arabidopsis thaliana HOM05D005681 ORTHO05D007274 6.8e-112 407.9 309 68.3
Prupe.1G451500 Prunus persica HOM05D005681 ORTHO05D007274 8.9e-112 407.5 290 69.7
Sed0026422 Sechium edule HOM05D005681 ORTHO05D007274 3.4e-111 405.6 305 68.5
Hund03415 Selenicereus undatus HOM05D005681 ORTHO05D007274 4.4e-111 405.2 306 66.7
Rhsim07G0152800 Rhododendron simsii HOM05D005681 ORTHO05D007274 5.8e-111 404.8 305 68.5
Carub.0007s0774 Capsella rubella HOM05D005681 ORTHO05D007274 9.9e-111 404.1 308 66.9
Aa31LG2G17210 Aethionema arabicum HOM05D005681 ORTHO05D007274 2.2e-110 402.9 307 67.8
Potri.006G241200 Populus trichocarpa HOM05D005681 ORTHO05D007274 3.7e-110 402.1 305 67.5
Eucgr.C02898 Eucalyptus grandis HOM05D005681 ORTHO05D007274 6.4e-110 401.4 307 67.4
Haze_21866 Corylus avellana HOM05D005681 ORTHO05D007274 1.1e-109 400.6 381 57.0
TPR.G1346 Trifolium pratense HOM05D005681 ORTHO05D007274 1.1e-109 400.6 307 68.7
vmacro05364 Vaccinium macrocarpon HOM05D005681 ORTHO05D007274 1.4e-109 400.2 290 70.7
Ah.10g035130 Amaranthus hybridus HOM05D005681 ORTHO05D007274 1.9e-109 399.8 293 67.9
COL.COLO4_18685 Corchorus olitorius HOM05D005681 ORTHO05D007274 4.1e-109 398.7 326 63.8
Aqoxy7G01593 Aquilegia oxysepala HOM05D005681 ORTHO05D007274 9.2e-109 397.5 305 65.2
Thhalv10025880m.g Eutrema salsugineum HOM05D005681 ORTHO05D007274 9.2e-109 397.5 309 66.7
PSO566G0344 Papaver somniferum HOM05D005681 ORTHO05D007274 1.6e-108 396.7 301 68.1
Sp7g30510 Schrenkiella parvula HOM05D005681 ORTHO05D007274 2.7e-108 396.0 308 65.9
PSO782G3698 Papaver somniferum HOM05D005681 ORTHO05D007274 4.6e-108 395.2 301 66.8
Sed0017759 Sechium edule HOM05D005681 ORTHO05D007274 4.6e-108 395.2 304 66.1
RcHm_v2.0_Chr6g0305881 Rosa chinensis HOM05D005681 ORTHO05D007274 6.0e-108 394.8 291 69.1
BcaB03g12761 Brassica carinata HOM05D005681 ORTHO05D007274 1.3e-107 393.7 309 66.0
FvH4_2g35990 Fragaria vesca HOM05D005681 ORTHO05D007274 3.0e-107 392.5 292 70.2
Lj7A706G35 Lonicera japonica HOM05D005681 ORTHO05D007274 3.0e-107 392.5 308 67.9
MBI01_g15703_MAGBIO Magnolia biondii HOM05D005681 ORTHO05D007274 3.0e-107 392.5 304 67.8
A08p17930 Brassica napus HOM05D005681 ORTHO05D007274 1.1e-106 390.6 310 66.5
BraA08t33745Z Brassica rapa HOM05D005681 ORTHO05D007274 1.1e-106 390.6 310 66.5
CARHR240740 Cardamine hirsuta HOM05D005681 ORTHO05D007274 1.1e-106 390.6 308 65.9
BolC3t21001H Brassica oleracea HOM05D005681 ORTHO05D007274 2.5e-106 389.4 310 66.1
C03p87050 Brassica napus HOM05D005681 ORTHO05D007274 9.6e-106 387.5 310 65.8
Potri.018G038600 Populus trichocarpa HOM05D005681 ORTHO05D007274 4.7e-105 385.2 305 64.3
FAN20G2636 Fragaria x ananassa HOM05D005681 ORTHO05D007274 6.2e-105 384.8 292 69.5
Sabra18G0039000 Salix brachista HOM05D005681 ORTHO05D007274 5.8e-103 378.3 305 63.3
Sabra06G0188600 Salix brachista HOM05D005681 ORTHO05D007274 7.6e-103 377.9 305 63.6
ATR0315G043 Amborella trichopoda HOM05D005681 ORTHO05D007274 1.0e-99 367.5 307 63.8
CSS0012406 Camellia sinensis var. sinensis HOM05D005681 ORTHO05D007274 8.7e-99 364.4 293 66.2
CANSAT80G1365 Cannabis sativa HOM05D005681 ORTHO05D007274 1.5e-98 363.6 303 63.0
MD08G1117000 Malus domestica HOM05D005681 ORTHO05D007274 4.3e-98 362.1 286 67.1
Cpa.g.sc78.73 Carica papaya HOM05D005681 ORTHO05D007274 1.3e-97 360.5 459 46.8
Nn2g11688 Nelumbo nucifera HOM05D005681 ORTHO05D007274 1.6e-97 360.1 259 69.9
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 2.0e-95 353.2 304 63.5
HanXRQChr08g0236281 Helianthus annuus HOM05D005681 ORTHO05D007274 3.8e-94 349.0 305 61.6
ECA246G0085 Erigeron canadensis HOM05D005681 ORTHO05D007274 3.0e-91 339.3 273 66.3
HPP92_006301 Vanilla planifolia HOM05D005681 ORTHO05D007274 3.6e-89 332.4 293 57.0
HPP92_006306 Vanilla planifolia HOM05D005681 ORTHO05D007274 8.1e-89 331.3 293 57.3
BcaC09g52069 Brassica carinata HOM05D005681 ORTHO05D007274 2.4e-88 329.7 300 59.3
CsaV3_2G031020 Cucumis sativus L. HOM05D005681 ORTHO05D007274 3.8e-86 322.4 198 79.3
A01p05570 Brassica napus HOM05D005681 ORTHO05D007274 1.1e-85 320.9 307 57.3
BolC7t46377H Brassica oleracea HOM05D005681 ORTHO05D007274 2.3e-83 313.2 223 69.5
Os02g0272400 Oryza sativa ssp. japonica HOM05D005681 ORTHO05D007274 1.9e-82 310.1 310 52.9
Gohir.D06G095800 Gossypium hirsutum HOM05D005681 ORTHO05D007274 1.6e-81 307.0 216 71.3
Dinv30480 Davidia involucrata HOM05D005681 ORTHO05D007274 3.4e-79 299.3 272 58.1
AUR62043614 Chenopodium quinoa HOM05D005681 ORTHO05D007274 8.4e-78 294.7 305 53.8
Duzib168G1957 Durio zibethinus HOM05D005681 ORTHO05D007274 7.1e-77 291.6 286 57.0
Zm00001eb203450 Zea mays HOM05D005681 ORTHO05D007274 9.3e-77 291.2 298 52.0
AUR62029668 Chenopodium quinoa HOM05D005681 ORTHO05D007274 2.7e-76 289.7 305 53.4
CDE04G0437 Ceratophyllum demersum HOM05D005681 ORTHO05D007274 2.2e-70 270.0 286 50.7
Oeu008286.1 Olea europaea HOM05D005681 ORTHO05D007274 5.0e-70 268.9 164 79.9
DCAR_000748 Daucus carota HOM05D005681 ORTHO05D007274 1.8e-67 260.4 162 77.2
Oeu008289.1 Olea europaea HOM05D005681 ORTHO05D007274 6.7e-67 258.5 164 77.4
AagrBONN_evm.TU.Sc2ySwM_362.2150 Anthoceros agrestis HOM05D005681 ORTHO05D007274 8.7e-67 258.1 287 47.7
Lsat_1_v5_gn_1_49740 Lactuca sativa HOM05D005681 ORTHO05D007274 1.5e-66 257.3 291 48.8
Mapoly0093s0011 Marchantia polymorpha HOM05D005681 ORTHO05D007274 2.5e-66 256.5 284 49.3
BcaNung03601 Brassica carinata HOM05D005681 ORTHO05D007274 9.7e-66 254.6 266 54.5
Pp3c7_12500 Physcomitrium patens HOM05D005681 ORTHO05D007274 1.5e-63 247.3 282 47.5
Pp3c2_21260 Physcomitrium patens HOM05D005681 ORTHO05D007274 1.0e-59 234.6 287 46.7
SMO347G0207 Selaginella moellendorffii HOM05D005681 ORTHO05D007274 5.3e-56 222.2 287 46.3
BraA01t00528Z Brassica rapa HOM05D005681 ORTHO05D007274 1.7e-54 217.2 171 68.4
BcaNung04523 Brassica carinata HOM05D005681 ORTHO05D007274 2.1e-52 210.3 230 52.2
C07p59310 Brassica napus HOM05D005681 ORTHO05D007274 1.4e-51 207.6 180 61.1
Oeu012191.1 Olea europaea HOM05D005681 ORTHO05D007274 9.4e-45 184.9 141 64.5
AUR62043618 Chenopodium quinoa HOM05D005681 ORTHO05D007274 7.5e-42 175.3 117 74.4
MBI01_g30752_MAGBIO Magnolia biondii HOM05D005681 ORTHO05D007274 1.7e-33 147.5 150 55.3
Oeu031829.2 Olea europaea HOM05D005681 ORTHO05D007274 5.2e-19 99.4 141 40.4
ATR0051G031 Amborella trichopoda HOM05D005681 ORTHO05D007274 1.6e-15 87.8 79 57.0
A03p61560 Brassica napus HOM05D005681 ORTHO05D040333 3.5e-15 86.7 254 33.5
BraA03t15198Z Brassica rapa HOM05D005681 ORTHO05D040333 6.4e-09 65.9 191 32.5


User provided reference genes

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