Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g068230.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 1.0e-195 687.6 694 100.0
Sopen08g022090 Solanum pennellii HOM05D003689 ORTHO05D003950 8.7e-155 551.6 630 99.0
PGSC0003DMG400014513 Solanum tuberosum HOM05D003689 ORTHO05D003950 8.4e-150 535.0 628 97.9
Nitab4.5_0000052g0100 Nicotiana tabacum HOM05D003689 ORTHO05D003950 1.5e-119 434.5 631 87.8
Nitab4.5_0003338g0050 Nicotiana tabacum HOM05D003689 ORTHO05D003950 1.1e-114 418.3 628 87.3
Peaxi162Scf00523g00624 Petunia axillaris HOM05D003689 ORTHO05D003950 3.3e-114 416.8 631 89.1
CAN.G797.4 Capsicum annuum HOM05D003689 ORTHO05D003950 3.6e-108 396.7 628 86.3
Cc00_g17700 Coffea canephora HOM05D003689 ORTHO05D003950 2.9e-49 201.1 628 69.6
Potri.018G037200 Populus trichocarpa HOM05D003689 ORTHO05D003950 4.4e-42 177.2 637 68.0
CSS0006196 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 2.1e-36 158.3 618 64.2
Manes.16G066100 Manihot esculenta HOM05D003689 ORTHO05D003950 3.1e-35 154.5 637 66.9
Hma1.2p1_0140F.1_g063530 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 9.0e-35 152.9 239 61.9
Sabra18G0038000 Salix brachista HOM05D003689 ORTHO05D003950 9.0e-35 152.9 675 49.6
QL12p026389 Quercus lobata HOM05D003689 ORTHO05D003950 1.2e-34 152.5 636 66.2
DCAR_004497 Daucus carota HOM05D003689 ORTHO05D003950 7.6e-34 149.8 238 43.3
MSTRG.14008 Avicennia marina HOM05D003689 ORTHO05D003950 6.4e-33 146.7 239 64.0
Actinidia31220 Actinidia chinensis HOM05D003689 ORTHO05D003950 6.0e-31 140.2 632 66.6
Thecc.09G039700 Theobroma cacao HOM05D003689 ORTHO05D003950 3.0e-30 137.9 579 69.6
GSVIVG01035672001 Vitis vinifera HOM05D003689 ORTHO05D003950 3.0e-30 137.9 638 66.9
Gohir.A08G250800 Gossypium hirsutum HOM05D003689 ORTHO05D003950 3.3e-29 134.4 196 74.5
Cfa013343 Carpinus fangiana HOM05D003689 ORTHO05D003950 4.8e-28 130.6 245 56.3
Gohir.D08G272300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 8.1e-28 129.8 188 76.1
Gorai.004G290700 Gossypium raimondii HOM05D003689 ORTHO05D003950 8.1e-28 129.8 188 76.1
Ciclev10007728m.g Citrus clementina HOM05D003689 ORTHO05D003950 2.4e-27 128.3 636 64.6
Haze_21848 Corylus avellana HOM05D003689 ORTHO05D003950 4.0e-27 127.5 252 55.2
TWI63G0545 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 5.3e-27 127.1 237 57.8
Atru.chr7.2161 Acer truncatum HOM05D003689 ORTHO05D003950 1.3e-25 122.5 179 77.7
GSVIVG01015378001 Vitis vinifera HOM05D003689 ORTHO05D003950 1.3e-25 122.5 232 62.5
CiPaw.07G207300 Carya illinoinensis HOM05D003689 ORTHO05D003950 2.2e-25 121.7 245 56.3
EL10Ac2g04074 Beta vulgaris HOM05D003689 ORTHO05D003950 6.4e-25 120.2 214 44.4
SGA_v2.0_scaffold163G38088 Striga asiatica HOM05D003689 ORTHO05D003950 1.4e-24 119.0 132 43.9
FAN15G3321 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.9e-24 118.6 229 58.5
MD08G1118600 Malus domestica HOM05D003689 ORTHO05D003950 1.9e-24 118.6 668 62.7
Sed0017853 Sechium edule HOM05D003689 ORTHO05D003950 9.3e-24 116.3 202 62.4
PSO210G3978 Papaver somniferum HOM05D003689 ORTHO05D003950 1.6e-23 115.5 199 61.8
FvH4_2g36130 Fragaria vesca HOM05D003689 ORTHO05D003950 2.1e-23 115.2 212 61.8
Cc06_g09790 Coffea canephora HOM05D003689 ORTHO05D003950 2.7e-23 114.8 207 61.4
Haze_25759 Corylus avellana HOM05D003689 ORTHO05D003950 3.5e-23 114.4 603 67.0
FAN27G3406 Fragaria x ananassa HOM05D003689 ORTHO05D003950 3.5e-23 114.4 212 61.8
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 4.6e-23 114.0 204 34.8
AUR62023017 Chenopodium quinoa HOM05D003689 ORTHO05D003950 4.6e-23 114.0 218 47.2
ClCG11G014000 Citrullus lanatus HOM05D008234 ORTHO05D010422 4.6e-23 114.0 221 40.7
Prupe.1G452700 Prunus persica HOM05D003689 ORTHO05D003950 4.6e-23 114.0 637 59.8
Hma1.2p1_3266F.1_g334670 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 7.9e-23 113.2 210 60.5
PSO210G7239 Papaver somniferum HOM05D003689 ORTHO05D003950 7.9e-23 113.2 186 65.1
CDE02G3880 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 1.3e-22 112.5 244 53.3
BcaB04g19771 Brassica carinata HOM05D003689 ORTHO05D003950 1.8e-22 112.1 206 38.8
FAN20G2410 Fragaria x ananassa HOM05D003689 ORTHO05D003950 2.3e-22 111.7 212 61.3
RcHm_v2.0_Chr2g0090251 Rosa chinensis HOM05D003689 ORTHO05D003950 2.3e-22 111.7 208 61.5
Hma1.2p1_1151F.1_g262016 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 3.0e-22 111.3 244 54.9
ClCG06G008630 Citrullus lanatus HOM05D003689 ORTHO05D003950 5.1e-22 110.5 188 64.9
Eucgr.C03818 Eucalyptus grandis HOM05D003689 ORTHO05D003950 5.1e-22 110.5 188 64.4
BcaC04g23586 Brassica carinata HOM05D003689 ORTHO05D003950 6.7e-22 110.2 241 53.9
TAR624G0802 Trochodendron aralioides HOM05D003689 ORTHO05D003950 6.7e-22 110.2 220 57.7
Ciclev10007776m.g Citrus clementina HOM05D003689 ORTHO05D003950 8.7e-22 109.8 192 69.3
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 1.1e-21 109.4 213 33.3
AUR62009331 Chenopodium quinoa HOM05D003689 ORTHO05D003950 1.1e-21 109.4 218 45.4
C09p06740 Brassica napus HOM05D003689 ORTHO05D003950 1.5e-21 109.0 241 53.9
BolC9t53595H Brassica oleracea HOM05D003689 ORTHO05D003950 1.5e-21 109.0 241 53.9
CDE04G3773 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 1.5e-21 109.0 185 31.9
Dinv41614 Davidia involucrata HOM05D003689 ORTHO05D003950 1.5e-21 109.0 245 55.1
Sc23g0005900 Simmondsia chinensis HOM05D003689 ORTHO05D003950 1.9e-21 108.6 105 47.6
Ah.16g105250 Amaranthus hybridus HOM05D003689 ORTHO05D003950 3.3e-21 107.8 221 41.2
MELO3C003585.2 Cucumis melo HOM05D003689 ORTHO05D003950 3.3e-21 107.8 221 42.1
arahy.Tifrunner.gnm1.ann1.WWE821 Arachis hypogaea HOM05D003689 ORTHO05D003950 4.3e-21 107.5 186 61.3
FvH4_1g04540 Fragaria vesca HOM05D003689 ORTHO05D003950 4.3e-21 107.5 208 60.6
RcHm_v2.0_Chr6g0305741 Rosa chinensis HOM05D003689 ORTHO05D003950 4.3e-21 107.5 186 64.0
A09p06120 Brassica napus HOM05D003689 ORTHO05D003950 5.6e-21 107.1 241 53.5
BraA09t36253Z Brassica rapa HOM05D003689 ORTHO05D003950 5.6e-21 107.1 241 53.5
AL6G37510 Arabidopsis lyrata HOM05D003689 ORTHO05D003950 9.6e-21 106.3 208 57.7
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 9.6e-21 106.3 240 31.7
Lalb_Chr05g0222931 Lupinus albus HOM05D003689 ORTHO05D003950 1.3e-20 105.9 205 31.2
Glyma.08G038200 Glycine max HOM05D003689 ORTHO05D003950 3.7e-20 104.4 221 56.1
FAN26G3272 Fragaria x ananassa HOM05D003689 ORTHO05D003950 4.8e-20 104.0 208 60.1
Glyma.14G141800 Glycine max HOM05D003689 ORTHO05D003950 4.8e-20 104.0 236 49.6
Gorai.010G072200 Gossypium raimondii HOM05D003689 ORTHO05D003950 4.8e-20 104.0 188 63.3
VMungo0331G0581 Vigna mungo HOM05D003689 ORTHO05D003950 4.8e-20 104.0 211 58.8
FAN23G2461 Fragaria x ananassa HOM05D003689 ORTHO05D003950 8.1e-20 103.2 188 63.3
FAN28G1273 Fragaria x ananassa HOM05D003689 ORTHO05D003950 8.1e-20 103.2 208 60.1
TAR383G0867 Trochodendron aralioides HOM05D006226 ORTHO05D007738 1.1e-19 102.8 178 67.4
Thhalv10003915m.g Eutrema salsugineum HOM05D003689 ORTHO05D003950 1.4e-19 102.4 188 41.0
Thecc.09G108800 Theobroma cacao HOM05D003689 ORTHO05D003950 1.4e-19 102.4 206 58.7
BcaB06g28622 Brassica carinata HOM05D000888 ORTHO05D000740 1.8e-19 102.1 188 34.6
MELO3C025352.2 Cucumis melo HOM05D003689 ORTHO05D003950 2.4e-19 101.7 187 63.6
MBI04_g29969_MAGBIO Magnolia biondii HOM05D003689 ORTHO05D003950 4.0e-19 100.9 244 51.2
Phvul.010G165600 Phaseolus vulgaris HOM05D003689 ORTHO05D003950 4.0e-19 100.9 217 55.3
THA.LOC104799204 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 4.0e-19 100.9 198 57.6
Gohir.A06G063300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 5.3e-19 100.5 188 62.2
Gohir.D06G062000 Gossypium hirsutum HOM05D003689 ORTHO05D003950 6.9e-19 100.1 188 62.8
arahy.Tifrunner.gnm1.ann1.EDC6ME Arachis hypogaea HOM05D003689 ORTHO05D003950 9.0e-19 99.8 192 61.5
arahy.Tifrunner.gnm1.ann1.K2CPZ4 Arachis hypogaea HOM05D003689 ORTHO05D003950 9.0e-19 99.8 192 61.5
Potri.006G242600 Populus trichocarpa HOM05D003689 ORTHO05D003950 1.2e-18 99.4 151 41.1
arahy.Tifrunner.gnm1.ann1.6C9669 Arachis hypogaea HOM05D003689 ORTHO05D003950 1.5e-18 99.0 186 59.1
Migut.J01154 Erythranthe guttata HOM05D003689 ORTHO05D003950 1.5e-18 99.0 76 57.9
Cfa003251 Carpinus fangiana HOM05D003689 ORTHO05D003950 2.0e-18 98.6 620 64.8
arahy.Tifrunner.gnm1.ann1.SBHH31 Arachis hypogaea HOM05D003689 ORTHO05D003950 4.5e-18 97.4 190 61.6
CsaV3_1G025520 Cucumis sativus L. HOM05D003689 ORTHO05D003950 4.5e-18 97.4 187 62.6
Glyma.05G230700 Glycine max HOM05D003689 ORTHO05D003950 4.5e-18 97.4 232 53.9
THA.LOC104811116 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 5.8e-18 97.1 184 62.0
Lalb_Chr14g0362401 Lupinus albus HOM05D003689 ORTHO05D003950 7.6e-18 96.7 576 68.8
arahy.Tifrunner.gnm1.ann1.3U27PV Arachis hypogaea HOM05D003689 ORTHO05D003950 9.9e-18 96.3 192 60.9
Sc18g0001340 Simmondsia chinensis HOM05D003689 ORTHO05D003950 9.9e-18 96.3 186 58.1
CSS0016195 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 2.9e-17 94.7 95 50.5
MBI04_g43860_MAGBIO Magnolia biondii HOM05D003689 ORTHO05D003950 2.9e-17 94.7 146 37.0
Sp6g23340 Schrenkiella parvula HOM05D000055 ORTHO05D003950 2.9e-17 94.7 190 61.1
Lj7A652T76 Lonicera japonica HOM05D003689 ORTHO05D003950 3.8e-17 94.4 184 63.0
Lalb_Chr16g0388171 Lupinus albus HOM05D003689 ORTHO05D003950 3.8e-17 94.4 192 62.0
MD15G1183500 Malus domestica HOM05D003689 ORTHO05D003950 3.8e-17 94.4 188 61.2
Carub.0006s1949 Capsella rubella HOM05D000055 ORTHO05D003950 4.9e-17 94.0 204 59.3
AL6G32800 Arabidopsis lyrata HOM05D000055 ORTHO05D003950 6.4e-17 93.6 89 52.8
Peaxi162Scf00231g00023 Petunia axillaris HOM05D003689 ORTHO05D003950 6.4e-17 93.6 190 60.0
AT5G21222 Arabidopsis thaliana HOM05D000055 ORTHO05D003950 8.4e-17 93.2 89 52.8
CARHR191690 Cardamine hirsuta HOM05D000055 ORTHO05D003950 1.1e-16 92.8 92 52.2
Eucgr.C02891 Eucalyptus grandis HOM05D003689 ORTHO05D003950 1.9e-16 92.0 167 67.7
BcaC04g19516 Brassica carinata HOM05D000055 ORTHO05D000057 2.5e-16 91.7 77 54.5
C09p54880 Brassica napus HOM05D000055 ORTHO05D003950 2.5e-16 91.7 101 48.5
BolC9t58349H Brassica oleracea HOM05D000055 ORTHO05D003950 2.5e-16 91.7 101 48.5
Medtr1g008310 Medicago truncatula HOM05D003689 ORTHO05D003950 2.5e-16 91.7 235 28.1
PGSC0003DMG400024327 Solanum tuberosum HOM05D003689 ORTHO05D003950 2.5e-16 91.7 214 54.7
A10p18880 Brassica napus HOM05D000055 ORTHO05D003950 3.2e-16 91.3 75 56.0
BraA10t43967Z Brassica rapa HOM05D000055 ORTHO05D003950 3.2e-16 91.3 75 56.0
Ca_12812_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 3.2e-16 91.3 76 55.3
Thhalv10012659m.g Eutrema salsugineum HOM05D000055 ORTHO05D003950 3.2e-16 91.3 103 46.6
Actinidia32677 Actinidia chinensis HOM05D001279 ORTHO05D003950 4.2e-16 90.9 123 44.7
COL.COLO4_34846 Corchorus olitorius HOM05D001279 ORTHO05D001636 4.2e-16 90.9 70 60.0
Prupe.7G232600 Prunus persica HOM05D003689 ORTHO05D003950 5.5e-16 90.5 188 61.7
Potri.018G081700 Populus trichocarpa HOM05D003689 ORTHO05D003950 7.1e-16 90.1 78 55.1
PGR044G1205 Punica granatum HOM05D003689 ORTHO05D003950 1.2e-15 89.4 167 65.9
Sabra18G0068800 Salix brachista HOM05D003689 ORTHO05D003950 1.2e-15 89.4 115 40.0
Hund09215 Selenicereus undatus HOM05D003689 ORTHO05D003950 1.2e-15 89.4 186 57.0
Lj4g0026082 Lotus japonicus HOM05D003689 ORTHO05D003950 2.1e-15 88.6 89 50.6
Duzib187G1779 Durio zibethinus HOM05D003689 ORTHO05D003950 2.7e-15 88.2 145 34.5
Nitab4.5_0000114g0090 Nicotiana tabacum HOM05D003689 ORTHO05D003950 2.7e-15 88.2 216 54.2
Aqoxy7G03846 Aquilegia oxysepala HOM05D003689 ORTHO05D003950 3.5e-15 87.8 236 52.1
ATR0315G024 Amborella trichopoda HOM05D003689 ORTHO05D003950 7.9e-15 86.7 77 53.2
CAN.G238.2 Capsicum annuum HOM05D003689 ORTHO05D003950 1.0e-14 86.3 238 50.0
Nitab4.5_0004562g0020 Nicotiana tabacum HOM05D003689 ORTHO05D003950 1.0e-14 86.3 252 48.8
Duzib150G1680 Durio zibethinus HOM05D003689 ORTHO05D003950 1.8e-14 85.5 219 53.0
Rhsim01G0097100 Rhododendron simsii HOM05D003689 ORTHO05D003950 2.3e-14 85.1 219 48.4
MSTRG.6008 Avicennia marina HOM05D003689 ORTHO05D003950 3.0e-14 84.7 83 47.0
QL02p044325 Quercus lobata HOM05D003689 ORTHO05D003950 3.0e-14 84.7 96 43.8
Aa31LG1G13560 Aethionema arabicum HOM05D000055 ORTHO05D003950 3.9e-14 84.3 74 51.4
Manes.03G021600 Manihot esculenta HOM05D003689 ORTHO05D003950 5.1e-14 84.0 204 56.9
SGA_v2.0_scaffold163G38089 Striga asiatica HOM05D003689 ORTHO05D003950 8.7e-14 83.2 126 34.9
Sopen07g016320 Solanum pennellii HOM05D003689 ORTHO05D003950 1.5e-13 82.4 189 58.7
QL02p045402 Quercus lobata HOM05D003689 ORTHO05D003950 1.9e-13 82.0 69 55.1
Os01g0228400 Oryza sativa ssp. japonica HOM05D003689 ORTHO05D003950 2.5e-13 81.6 101 40.6
Nn7g35992 Nelumbo nucifera HOM05D003689 ORTHO05D003950 4.3e-13 80.9 125 36.8
Nn8g39148 Nelumbo nucifera HOM05D003689 ORTHO05D003950 4.3e-13 80.9 139 35.3
Actinidia32678 Actinidia chinensis HOM05D003689 ORTHO05D003950 5.6e-13 80.5 127 38.6
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 9.6e-13 79.7 169 30.2
Zm00001eb315460 Zea mays HOM05D003689 ORTHO05D003950 9.6e-13 79.7 190 25.3
Solyc07g032380.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 1.6e-12 79.0 78 50.0
DCAR_012069 Daucus carota HOM05D001279 ORTHO05D001636 2.8e-12 78.2 166 63.3
arahy.Tifrunner.gnm1.ann1.Z43HYI Arachis hypogaea HOM05D003689 ORTHO05D003950 6.2e-12 77.0 167 64.1
Oeu002241.1 Olea europaea HOM05D003689 ORTHO05D003950 8.2e-12 76.6 165 58.2
Cpa.g.sc78.81 Carica papaya HOM05D003689 ORTHO05D003950 1.8e-11 75.5 144 36.1
Sed0002455 Sechium edule HOM05D003689 ORTHO05D003950 2.4e-11 75.1 185 56.8
CANSAT56G1603 Cannabis sativa HOM05D003689 ORTHO05D003950 3.1e-11 74.7 224 50.9
CANSAT56G4471 Cannabis sativa HOM05D003689 ORTHO05D003950 3.1e-11 74.7 224 50.9
Lsat_1_v5_gn_8_95421 Lactuca sativa HOM05D003689 ORTHO05D003950 4.0e-11 74.3 189 57.7
Ca_17333_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 5.3e-11 73.9 167 62.9
Lalb_Chr14g0371561 Lupinus albus HOM05D003689 ORTHO05D003950 6.9e-11 73.6 78 43.6
HanXRQChr06g0180011 Helianthus annuus HOM05D003689 ORTHO05D003950 1.2e-10 72.8 188 56.9
Lj8A603G55 Lonicera japonica HOM05D003689 ORTHO05D003950 2.0e-10 72.0 72 47.2
Lj8C603T17 Lonicera japonica HOM05D003689 ORTHO05D003950 7.6e-10 70.1 67 47.8
Psat0s586g0040 Pisum sativum HOM05D003689 ORTHO05D003950 7.6e-10 70.1 71 47.9
AUR62010979 Chenopodium quinoa HOM05D003689 ORTHO05D003950 1.7e-09 68.9 191 53.9
AUR62021489 Chenopodium quinoa HOM05D003689 ORTHO05D003950 2.9e-09 68.2 191 53.4
PGR102G1523 Punica granatum HOM05D003689 ORTHO05D003950 2.9e-09 68.2 188 55.3
TWI34G0694 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 3.8e-09 67.8 53 58.5
Sabra06G0189700 Salix brachista HOM05D003689 ORTHO05D003950 8.4e-09 66.6 141 32.6
EL10Ac8g18479 Beta vulgaris HOM05D003689 ORTHO05D003950 1.4e-08 65.9 191 50.8
vmacro20709 Vaccinium macrocarpon HOM05D003689 ORTHO05D003950 1.4e-08 65.9 157 27.4
Ah.14g082150 Amaranthus hybridus HOM05D003689 ORTHO05D003950 2.5e-08 65.1 186 52.7
TAR624G0021 Trochodendron aralioides HOM05D003689 ORTHO05D003950 4.2e-08 64.3 93 38.7
ECA238G3870 Erigeron canadensis HOM05D003689 ORTHO05D009814 9.3e-08 63.2 187 55.1
Medtr8g103480 Medicago truncatula HOM05D003689 ORTHO05D003950 6.0e-07 60.5 53 49.1
EL10Ac8g18473 Beta vulgaris HOM05D003689 ORTHO05D003950 2.3e-06 58.5 70 40.0
Rhsim02G0182300 Rhododendron simsii HOM05D003689 ORTHO05D003950 8.7e-06 56.6 74 35.1


User provided reference genes

Program Settings