Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g068060.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 1.5e-153 546.2 285 100.0
Sopen08g021950 Solanum pennellii HOM05D003500 ORTHO05D003919 1.5e-145 519.6 289 94.8
PGSC0003DMG400014491 Solanum tuberosum HOM05D003500 ORTHO05D003919 9.7e-137 490.3 289 88.9
CAN.G886.10 Capsicum annuum HOM05D003500 ORTHO05D003919 5.3e-127 458.0 291 82.8
Nitab4.5_0002393g0050 Nicotiana tabacum HOM05D003500 ORTHO05D003919 2.3e-122 442.6 289 82.7
Nitab4.5_0000250g0140 Nicotiana tabacum HOM05D003500 ORTHO05D003919 1.4e-106 390.2 290 74.8
Peaxi162Scf00105g00615 Petunia axillaris HOM05D003500 ORTHO05D003919 7.8e-94 347.8 287 66.6
Peaxi162Scf01026g00254 Petunia axillaris HOM05D003500 ORTHO05D003919 2.4e-82 309.7 269 65.8
Dinv14210 Davidia involucrata HOM05D003500 ORTHO05D003919 4.5e-57 225.7 299 47.8
Hma1.2p1_0140F.1_g063720 Hydrangea macrophylla HOM05D003500 ORTHO05D003919 4.0e-50 202.6 301 43.9
Actinidia15719 Actinidia chinensis HOM05D003500 ORTHO05D003919 1.2e-46 191.0 291 44.7
Dinv30238 Davidia involucrata HOM05D003500 ORTHO05D003919 7.9e-46 188.3 286 44.4
CSS0048332 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 1.8e-45 187.2 296 43.6
TAR624G1157 Trochodendron aralioides HOM05D003500 ORTHO05D003919 1.3e-43 181.0 297 41.1
Actinidia14650 Actinidia chinensis HOM05D003500 ORTHO05D003919 9.0e-42 174.9 298 43.3
Rhsim07G0154900 Rhododendron simsii HOM05D003500 ORTHO05D003919 1.0e-40 171.4 295 41.0
Cc08_g08590 Coffea canephora HOM05D003500 ORTHO05D003919 1.4e-39 167.5 286 41.3
Lj8A606T22 Lonicera japonica HOM05D003500 ORTHO05D003919 1.4e-37 161.0 306 38.2
QL12p026085 Quercus lobata HOM05D003500 ORTHO05D003919 4.8e-35 152.5 297 38.7
CiPaw.07G208500 Carya illinoinensis HOM05D003500 ORTHO05D003919 9.1e-34 148.3 304 37.8
DCAR_003060 Daucus carota HOM05D003500 ORTHO05D003919 7.7e-33 145.2 298 40.3
Cfa013328 Carpinus fangiana HOM05D003500 ORTHO05D003919 2.2e-32 143.7 292 36.3
GSVIVG01035753001 Vitis vinifera HOM05D003500 ORTHO05D003919 2.2e-32 143.7 303 36.3
TAR636G0685 Trochodendron aralioides HOM05D003500 ORTHO05D003919 7.2e-31 138.7 268 39.9
Haze_21819 Corylus avellana HOM05D003500 ORTHO05D003919 2.1e-30 137.1 297 35.4
Oeu014656.1 Olea europaea HOM05D003500 ORTHO05D003919 1.0e-29 134.8 181 46.4
vmacro05351 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 1.1e-28 131.3 268 38.1
Ciclev10009124m.g Citrus clementina HOM05D003500 ORTHO05D003919 3.3e-28 129.8 291 34.4
Lsat_1_v5_gn_1_49081 Lactuca sativa HOM05D003500 ORTHO05D003919 4.4e-28 129.4 289 34.9
Sabra18G0036300 Salix brachista HOM05D003500 ORTHO05D003919 4.4e-28 129.4 289 34.9
Sopen06g004460 Solanum pennellii HOM05D003500 ORTHO05D003919 9.7e-28 128.3 69 94.2
Thecc.09G037900 Theobroma cacao HOM05D003500 ORTHO05D003919 1.7e-27 127.5 300 34.7
Potri.018G035800 Populus trichocarpa HOM05D003500 ORTHO05D003919 2.8e-27 126.7 289 35.3
Eucgr.C02880 Eucalyptus grandis HOM05D003500 ORTHO05D003919 6.3e-27 125.6 292 34.2
Migut.E01507 Erythranthe guttata HOM05D003500 ORTHO05D003919 1.1e-26 124.8 288 34.0
CANSAT35G1218 Cannabis sativa HOM05D003500 ORTHO05D003919 1.4e-26 124.4 303 35.3
Gohir.D07G028000 Gossypium hirsutum HOM05D003500 ORTHO05D003919 1.8e-26 124.0 301 33.6
Gohir.A07G024400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 2.4e-26 123.6 295 33.9
Sc09g0008940 Simmondsia chinensis HOM05D003500 ORTHO05D003919 4.1e-26 122.9 288 34.7
RcHm_v2.0_Chr6g0305551 Rosa chinensis HOM05D003500 ORTHO05D003919 7.0e-26 122.1 288 35.4
BolC1t00621H Brassica oleracea HOM05D003500 ORTHO05D003919 1.5e-25 120.9 295 33.2
A01p05660 Brassica napus HOM05D003500 ORTHO05D003919 2.6e-25 120.2 302 32.1
AUR62024822 Chenopodium quinoa HOM05D003500 ORTHO05D003919 5.9e-25 119.0 286 33.6
Duzib168G0612 Durio zibethinus HOM05D003500 ORTHO05D003919 5.9e-25 119.0 301 34.9
HanXRQChr01g0029371 Helianthus annuus HOM05D003500 ORTHO05D003919 5.9e-25 119.0 294 33.3
ClCG08G012430 Citrullus lanatus HOM05D003500 ORTHO05D003919 3.8e-24 116.3 298 35.2
MSTRG.14007 Avicennia marina HOM05D003500 ORTHO05D003919 5.0e-24 115.9 296 34.8
AUR62032393 Chenopodium quinoa HOM05D003500 ORTHO05D003919 5.0e-24 115.9 286 33.6
FAN20G2191 Fragaria x ananassa HOM05D003500 ORTHO05D003919 6.5e-24 115.5 286 36.0
Atru.chr7.2303 Acer truncatum HOM05D003500 ORTHO05D003919 8.5e-24 115.2 324 34.3
MELO3C011162.2 Cucumis melo HOM05D003500 ORTHO05D003919 1.9e-23 114.0 310 34.5
CsaV3_2G031120 Cucumis sativus L. HOM05D003500 ORTHO05D003919 2.5e-23 113.6 311 34.7
Manes.16G069800 Manihot esculenta HOM05D003500 ORTHO05D003919 2.5e-23 113.6 286 32.2
arahy.Tifrunner.gnm1.ann1.V41S3G Arachis hypogaea HOM05D003500 ORTHO05D003919 3.2e-23 113.2 288 32.6
BraA08t33760Z Brassica rapa HOM05D003500 ORTHO05D003919 5.5e-23 112.5 304 31.6
FvH4_2g36330 Fragaria vesca HOM05D003500 ORTHO05D003919 5.5e-23 112.5 286 35.0
Gorai.001G029300 Gossypium raimondii HOM05D003500 ORTHO05D003919 7.2e-23 112.1 286 31.8
Lalb_Chr03g0029341 Lupinus albus HOM05D003500 ORTHO05D003919 9.4e-23 111.7 297 36.7
EL10Ac2g02525 Beta vulgaris HOM05D003500 ORTHO05D003919 1.2e-22 111.3 288 34.7
FAN27G2449 Fragaria x ananassa HOM05D003500 ORTHO05D003919 1.6e-22 110.9 286 34.6
SGA_v2.0_scaffold169G38640 Striga asiatica HOM05D003500 ORTHO05D003919 2.7e-22 110.2 293 34.8
BcaB03g12755 Brassica carinata HOM05D003500 ORTHO05D003919 4.7e-22 109.4 288 31.9
Thhalv10025931m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 4.7e-22 109.4 306 31.4
TWI32G0121 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 6.1e-22 109.0 299 33.8
Duzib187G1538 Durio zibethinus HOM05D003500 ORTHO05D003919 1.0e-21 108.2 295 32.2
MD15G1099900 Malus domestica HOM05D003500 ORTHO05D003919 1.4e-21 107.8 311 34.1
vmacro18911 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 1.4e-21 107.8 298 32.2
PSO782G3147 Papaver somniferum HOM05D003500 ORTHO05D003919 2.3e-21 107.1 351 29.3
BcaC09g52062 Brassica carinata HOM05D003500 ORTHO05D003919 3.0e-21 106.7 295 31.2
PGR044G1892 Punica granatum HOM05D003500 ORTHO05D003919 5.2e-21 105.9 296 34.5
CARHR240660 Cardamine hirsuta HOM05D003500 ORTHO05D003919 6.7e-21 105.5 291 33.0
C03p87180 Brassica napus HOM05D003500 ORTHO05D003919 8.8e-21 105.1 285 30.9
BolC3t21020H Brassica oleracea HOM05D003500 ORTHO05D003919 8.8e-21 105.1 285 30.9
BraA01t00536Z Brassica rapa HOM05D003500 ORTHO05D003919 8.8e-21 105.1 291 32.3
Prupe.1G454700 Prunus persica HOM05D003500 ORTHO05D003919 8.8e-21 105.1 295 31.2
Sp7g30440 Schrenkiella parvula HOM05D003500 ORTHO05D003919 1.1e-20 104.8 305 30.8
Carub.0007s0785 Capsella rubella HOM05D003500 ORTHO05D003919 2.0e-20 104.0 290 31.0
PSO063G0209 Papaver somniferum HOM05D003500 ORTHO05D003919 2.0e-20 104.0 351 29.9
THA.LOC104818564 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 3.3e-20 103.2 286 30.4
BcaC01g01007 Brassica carinata HOM05D003500 ORTHO05D003919 1.3e-19 101.3 285 30.9
Haze_16428 Corylus avellana HOM05D003500 ORTHO05D003919 1.3e-19 101.3 301 32.6
Phvul.011G117800 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 1.7e-19 100.9 284 31.7
AL7G19060 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 2.8e-19 100.1 292 30.1
arahy.Tifrunner.gnm1.ann1.HR3BJH Arachis hypogaea HOM05D003500 ORTHO05D003919 2.8e-19 100.1 280 32.1
AT4G32680 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 3.7e-19 99.8 304 31.9
Glyma.12G113900 Glycine max HOM05D003500 ORTHO05D003919 3.7e-19 99.8 279 33.7
Dinv30507 Davidia involucrata HOM05D003500 ORTHO05D003919 4.8e-19 99.4 277 35.0
Ah.10g025530 Amaranthus hybridus HOM05D003500 ORTHO05D003919 1.1e-18 98.2 292 31.8
TPR.G31013 Trifolium pratense HOM05D003500 ORTHO05D003919 1.4e-18 97.8 272 29.8
Aqoxy7G01735 Aquilegia oxysepala HOM05D003500 ORTHO05D003919 1.8e-18 97.4 334 29.0
TPR.G21779 Trifolium pratense HOM05D003500 ORTHO05D003919 1.8e-18 97.4 273 31.5
TWI18G0570 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 1.8e-18 97.4 280 32.9
ECA248G2427 Erigeron canadensis HOM05D002222 ORTHO05D002354 2.4e-18 97.1 185 38.9
Medtr6g007370 Medicago truncatula HOM05D003500 ORTHO05D003919 9.1e-18 95.1 276 30.8
Medtr7g446310 Medicago truncatula HOM05D003500 ORTHO05D003919 9.1e-18 95.1 276 30.8
Hund25650 Selenicereus undatus HOM05D003500 ORTHO05D003919 2.0e-17 94.0 276 31.9
Cfa002069 Carpinus fangiana HOM05D003500 ORTHO05D003919 3.5e-17 93.2 288 30.6
Ca_26668_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 1.7e-16 90.9 284 29.2
VMungo1127G1234 Vigna mungo HOM05D003500 ORTHO05D003919 2.2e-16 90.5 286 31.1
Aa31LG2G16940 Aethionema arabicum HOM05D003500 ORTHO05D003919 2.9e-16 90.1 287 31.0
Psat7g063400 Pisum sativum HOM05D003500 ORTHO05D003919 2.9e-16 90.1 290 29.3
Glyma.08G206700 Glycine max HOM05D003500 ORTHO05D003919 8.5e-16 88.6 313 29.7
ECA233G0641 Erigeron canadensis HOM05D003500 ORTHO05D003919 2.5e-15 87.0 286 29.7
HanXRQChr17g0541731 Helianthus annuus HOM05D003500 ORTHO05D003919 3.2e-15 86.7 288 30.2
RcHm_v2.0_Chr2g0137891 Rosa chinensis HOM05D003500 ORTHO05D003919 3.2e-15 86.7 281 28.5
Lj3g0003659 Lotus japonicus HOM05D003500 ORTHO05D003919 5.5e-15 85.9 289 30.4
Oeu000451.1 Olea europaea HOM05D003500 ORTHO05D003919 5.5e-15 85.9 293 31.1
VMungo0331G1412 Vigna mungo HOM05D003500 ORTHO05D003919 5.5e-15 85.9 304 30.9
Medtr4g012520 Medicago truncatula HOM05D003500 ORTHO05D003919 7.2e-15 85.5 278 30.9
Migut.D01030 Erythranthe guttata HOM05D003500 ORTHO05D003919 9.4e-15 85.1 285 30.9
Lj3g0021763 Lotus japonicus HOM05D003500 ORTHO05D003919 9.4e-15 85.1 282 31.9
Glyma.07G006100 Glycine max HOM05D003500 ORTHO05D003919 1.6e-14 84.3 304 29.3
MD17G1194800 Malus domestica HOM05D003500 ORTHO05D003919 2.1e-14 84.0 292 29.1
C01p06230 Brassica napus HOM05D003500 ORTHO05D003919 2.7e-14 83.6 157 36.3
FvH4_6g31220 Fragaria vesca HOM05D003500 ORTHO05D003919 3.6e-14 83.2 285 27.7
Ciclev10027012m.g Citrus clementina HOM05D003500 ORTHO05D003919 8.0e-14 82.0 295 30.5
FAN14G5419 Fragaria x ananassa HOM05D003500 ORTHO05D003919 1.0e-13 81.6 284 27.5
Potri.003G055200 Populus trichocarpa HOM05D003500 ORTHO05D003919 1.4e-13 81.3 299 28.4
A08p18080 Brassica napus HOM05D003500 ORTHO05D003919 8.8e-13 78.6 137 35.8
Os01g0863400 Oryza sativa ssp. japonica HOM05D003500 ORTHO05D003919 8.8e-13 78.6 313 28.4
Rhsim08G0221500 Rhododendron simsii HOM05D003500 ORTHO05D003919 1.2e-12 78.2 191 32.5
AL7G19270 Arabidopsis lyrata HOM05D002156 ORTHO05D003919 1.5e-12 77.8 155 34.8
PGR102G2146 Punica granatum HOM05D003500 ORTHO05D003919 2.0e-12 77.4 298 31.9
HPP92_005532 Vanilla planifolia HOM05D003500 ORTHO05D003919 2.0e-12 77.4 282 26.2
CsaV3_3G025090 Cucumis sativus L. HOM05D003500 ORTHO05D003919 3.4e-12 76.6 315 27.3
ClCG07G013080 Citrullus lanatus HOM05D003500 ORTHO05D003919 7.5e-12 75.5 312 27.9
Sc12g0009290 Simmondsia chinensis HOM05D003500 ORTHO05D003919 7.5e-12 75.5 284 30.3
Eucgr.F03015 Eucalyptus grandis HOM05D003500 ORTHO05D003919 1.3e-11 74.7 284 26.4
Migut.I00867 Erythranthe guttata HOM05D003500 ORTHO05D003919 1.7e-11 74.3 279 29.4
Thhalv10012010m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 2.2e-11 73.9 276 27.5
Psat7g252240 Pisum sativum HOM05D003500 ORTHO05D003919 2.2e-11 73.9 294 27.9
Actinidia32755 Actinidia chinensis HOM05D003500 ORTHO05D003919 3.7e-11 73.2 277 27.4
Prupe.3G070800 Prunus persica HOM05D003500 ORTHO05D003919 4.8e-11 72.8 289 26.6
Sed0003187 Sechium edule HOM05D003500 ORTHO05D003919 6.3e-11 72.4 300 26.7
BolC6t35867H Brassica oleracea HOM05D003500 ORTHO05D003919 8.3e-11 72.0 284 28.5
Sed0015651 Sechium edule HOM05D003500 ORTHO05D003919 8.3e-11 72.0 307 27.7
C06p07810 Brassica napus HOM05D003500 ORTHO05D003919 1.1e-10 71.6 284 28.5
HanXRQChr02g0053631 Helianthus annuus HOM05D003500 ORTHO05D003919 1.1e-10 71.6 287 27.9
unitig_32.g11118 Utricularia gibba HOM05D003500 ORTHO05D003919 1.1e-10 71.6 301 29.9
Lalb_Chr04g0262681 Lupinus albus HOM05D003500 ORTHO05D003919 1.8e-10 70.9 299 29.1
SalBow2G3431 Salvia bowleyana HOM05D003500 ORTHO05D003919 1.8e-10 70.9 281 28.8
Sed0000644 Sechium edule HOM05D003500 ORTHO05D003919 1.8e-10 70.9 169 33.7
THA.LOC104810618 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 2.4e-10 70.5 289 30.1
Zm00001eb366780 Zea mays HOM05D039918 ORTHO05D003919 3.1e-10 70.1 125 36.8
A06p01860 Brassica napus HOM05D003500 ORTHO05D003919 4.1e-10 69.7 281 28.5
BraA06t23403Z Brassica rapa HOM05D003500 ORTHO05D003919 4.1e-10 69.7 281 28.8
MBI11_g07535_MAGBIO Magnolia biondii HOM05D003500 ORTHO05D003919 9.1e-10 68.6 130 36.9
ATR0051G010 Amborella trichopoda HOM05D003500 ORTHO05D003919 1.6e-09 67.8 132 36.4
Ca_20390_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 1.6e-09 67.8 276 28.3
Thecc.06G088400 Theobroma cacao HOM05D003500 ORTHO05D003919 3.5e-09 66.6 140 34.3
Peaxi162Scf00015g10038 Petunia axillaris HOM05D003500 ORTHO05D003919 5.9e-09 65.9 158 34.2
arahy.Tifrunner.gnm1.ann1.Y86J0E Arachis hypogaea HOM05D003500 ORTHO05D003919 7.7e-09 65.5 292 25.0
MSTRG.4733 Avicennia marina HOM05D003500 ORTHO05D003919 7.7e-09 65.5 290 30.0
arahy.Tifrunner.gnm1.ann1.AD7SDK Arachis hypogaea HOM05D003500 ORTHO05D003919 1.0e-08 65.1 287 26.8
CiPaw.01G239100 Carya illinoinensis HOM05D003500 ORTHO05D003919 1.3e-08 64.7 149 32.2
Phvul.010G150500 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 1.3e-08 64.7 324 28.7
Manes.04G123600 Manihot esculenta HOM05D003500 ORTHO05D003919 1.7e-08 64.3 240 28.3
CANSAT56G2888 Cannabis sativa HOM05D003500 ORTHO05D003919 2.2e-08 63.9 135 35.6
Nitab4.5_0005851g0060 Nicotiana tabacum HOM05D003500 ORTHO05D003919 2.2e-08 63.9 158 33.5
Sp1g38960 Schrenkiella parvula HOM05D003500 ORTHO05D003919 2.9e-08 63.5 278 27.3
SGA_v2.0_scaffold68G23002 Striga asiatica HOM05D003500 ORTHO05D003919 2.9e-08 63.5 299 29.4
Manes.11G047100 Manihot esculenta HOM05D003500 ORTHO05D003919 8.5e-08 62.0 297 27.9
QL05p023510 Quercus lobata HOM05D003500 ORTHO05D003919 8.5e-08 62.0 194 30.9
BcaC08g43415 Brassica carinata HOM05D003500 ORTHO05D003919 1.1e-07 61.6 276 27.2
Duzib235G1266 Durio zibethinus HOM05D003500 ORTHO05D003919 1.5e-07 61.2 293 25.3
Nitab4.5_0000671g0100 Nicotiana tabacum HOM05D003500 ORTHO05D003919 2.5e-07 60.5 158 32.9
Solyc03g120180.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 3.2e-07 60.1 136 32.4
CARHR042490 Cardamine hirsuta HOM05D003500 ORTHO05D003919 4.2e-07 59.7 281 27.0
Nn2g11771 Nelumbo nucifera HOM05D003500 ORTHO05D003919 4.2e-07 59.7 183 31.1
SalBow2G0526 Salvia bowleyana HOM05D003500 ORTHO05D003919 4.2e-07 59.7 283 25.4
MELO3C012963.2 Cucumis melo HOM05D003500 ORTHO05D003919 5.5e-07 59.3 252 27.4
SGA_v2.0_scaffold37G14827 Striga asiatica HOM05D003500 ORTHO05D003919 5.5e-07 59.3 239 32.6
Cpa.g.sc205.12 Carica papaya HOM05D003500 ORTHO05D003919 9.4e-07 58.5 65 50.8
COL.COLO4_30382 Corchorus olitorius HOM05D003500 ORTHO05D003919 1.2e-06 58.2 210 28.6
Carub.0001s4135 Capsella rubella HOM05D003500 ORTHO05D003919 1.6e-06 57.8 286 28.0
Mapoly0020s0159 Marchantia polymorpha HOM05D003500 ORTHO05D003919 1.6e-06 57.8 310 26.5
CSS0016282 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 6.1e-06 55.8 145 34.5
CSS0048346 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 6.1e-06 55.8 145 34.5
Lalb_Chr01g0012691 Lupinus albus HOM05D003500 ORTHO05D003919 6.1e-06 55.8 132 31.1


User provided reference genes

Program Settings