Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g068040.3 Solanum lycopersicum HOM05D004019 ORTHO05D005136 0.0e+00 1275.4 649 100.0
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 0.0e+00 1254.6 645 98.8
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.0e-306 1056.2 675 80.4
Peaxi162Scf00105g00812 Petunia axillaris HOM05D004019 ORTHO05D005136 8.0e-296 1020.0 647 80.5
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 5.6e-257 891.0 561 81.5
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 2.1e-227 792.7 659 62.2
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 1.1e-225 786.9 660 61.7
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 6.7e-210 734.6 666 58.7
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 2.6e-206 722.6 650 59.2
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 7.7e-206 721.1 651 58.7
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 3.2e-204 715.7 652 60.0
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 1.4e-202 710.3 661 56.0
vmacro11102 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 5.7e-201 704.9 693 55.8
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 1.3e-200 703.7 674 55.9
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 4.8e-200 701.8 659 55.8
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 4.8e-200 701.8 667 55.2
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 2.4e-199 699.5 665 55.0
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 4.1e-199 698.7 691 54.8
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 9.1e-199 697.6 670 54.0
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 1.6e-198 696.8 674 55.2
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 2.7e-198 696.0 711 53.3
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 2.2e-197 693.0 680 55.6
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 5.0e-197 691.8 663 55.4
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 3.2e-196 689.1 679 55.1
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 4.2e-196 688.7 670 53.7
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 9.4e-196 687.6 682 55.1
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 3.6e-195 685.6 650 56.6
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 2.3e-194 682.9 673 54.2
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 6.8e-194 681.4 664 54.4
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 1.5e-193 680.2 658 54.7
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 1.7e-192 676.8 669 54.7
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 3.7e-192 675.6 670 52.8
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 4.9e-192 675.2 682 52.8
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 1.6e-190 670.2 662 55.3
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 7.7e-190 667.9 653 53.8
QL12p030952 Quercus lobata HOM05D004019 ORTHO05D005136 1.3e-189 667.2 729 51.3
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 8.6e-189 664.5 679 52.1
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 1.2e-187 660.6 694 52.9
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 1.5e-185 653.7 743 49.8
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 5.7e-185 651.7 653 53.8
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 4.9e-184 648.7 682 53.8
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 8.3e-184 647.9 682 53.7
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 1.1e-183 647.5 647 52.6
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 1.2e-182 644.0 650 53.4
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 2.7e-182 642.9 668 52.7
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 5.9e-182 641.7 652 53.8
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 2.3e-181 639.8 643 52.3
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 1.5e-180 637.1 650 52.6
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 6.2e-179 631.7 667 52.2
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 1.8e-178 630.2 671 51.4
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 5.8e-177 625.2 673 51.9
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 5.8e-177 625.2 677 51.3
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 1.7e-176 623.6 667 51.7
ClCG05G017320 Citrullus lanatus HOM05D004019 ORTHO05D005136 1.7e-176 623.6 678 50.9
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 6.4e-176 621.7 652 52.5
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 1.1e-175 620.9 660 50.3
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 1.9e-175 620.2 672 50.6
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 1.9e-175 620.2 668 50.9
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 4.1e-175 619.0 656 51.2
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 5.4e-175 618.6 659 49.6
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 9.2e-175 617.8 659 49.8
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 9.2e-175 617.8 659 49.6
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 7.8e-174 614.8 646 51.5
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 4.3e-172 609.0 652 51.8
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 1.2e-171 607.4 653 52.1
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 3.6e-171 605.9 656 50.3
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 6.2e-171 605.1 664 50.9
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 1.2e-169 600.9 662 48.5
Haze_21656 Corylus avellana HOM05D004019 ORTHO05D005136 2.2e-168 596.7 768 45.6
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 3.2e-167 592.8 464 64.2
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 7.3e-164 581.6 652 48.0
Ah.12g060350 Amaranthus hybridus HOM05D004019 ORTHO05D005136 6.2e-163 578.6 654 50.6
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 4.4e-161 572.4 653 46.9
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 5.8e-161 572.0 652 47.5
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 9.9e-161 571.2 654 46.9
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 1.6e-155 553.9 678 45.3
HPP92_006442 Vanilla planifolia HOM05D004019 ORTHO05D005136 3.1e-146 523.1 654 46.3
SalBow4G2655 Salvia bowleyana HOM05D004019 ORTHO05D005136 1.2e-145 521.2 479 56.6
SHI11647 Sapria himalayana HOM05D004019 ORTHO05D005136 1.5e-132 477.6 660 42.6
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 2.4e-130 470.3 652 42.2
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 6.5e-120 435.6 357 62.2
DCAR_006255 Daucus carota HOM05D004019 ORTHO05D005136 9.3e-119 431.8 360 64.7
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 7.9e-118 428.7 643 40.0
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 1.1e-116 424.9 359 60.7
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 2.9e-112 410.2 362 57.5
Cpa.g.sc205.19 Carica papaya HOM05D004019 ORTHO05D005136 1.0e-109 401.7 347 61.1
SEGI_01785 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 1.5e-92 344.7 369 49.1
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 4.7e-86 323.2 763 32.8
Cc08_g08730 Coffea canephora HOM05D000021 ORTHO05D000010 9.5e-79 298.9 293 55.3
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 1.2e-78 298.5 858 28.7
Cc00_g31360 Coffea canephora HOM05D004019 ORTHO05D005136 1.2e-76 292.0 302 53.6
DCAR_006254 Daucus carota HOM05D004019 ORTHO05D005136 1.4e-66 258.5 288 49.7
Cpa.g.sc205.16 Carica papaya HOM05D004019 ORTHO05D005136 1.5e-63 248.4 317 47.3
Hma1.2p1_0140F.1_g063760 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 1.4e-61 241.9 167 71.3
unitig_747.g21873 Utricularia gibba HOM05D004019 ORTHO05D005136 2.3e-61 241.1 292 50.0
unitig_747.g21874 Utricularia gibba HOM05D004019 ORTHO05D005136 2.7e-57 227.6 188 61.2
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 5.1e-48 196.8 611 27.3
AagrBONN_evm.TU.Sc2ySwM_340.130 Anthoceros agrestis HOM05D004019 ORTHO05D005136 1.1e-42 179.1 718 24.5
CBR_g31401 Chara braunii HOM05D004019 ORTHO05D005136 1.4e-34 152.1 399 30.6
PGR042G0250 Punica granatum HOM05D004019 ORTHO05D005136 1.2e-28 132.5 142 47.2
Oeu022768.1 Olea europaea HOM05D004019 ORTHO05D005136 5.6e-23 113.6 120 50.8
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 7.4e-23 113.2 92 58.7
Cc08_g08790 Coffea canephora HOM05D004019 ORTHO05D005136 7.6e-20 103.2 60 78.3
Cc00_g28950 Coffea canephora HOM05D004019 ORTHO05D005136 6.4e-19 100.1 60 78.3
FvH4_2g30421 Fragaria vesca HOM05D004019 ORTHO05D035788 5.8e-12 77.0 76 51.3


User provided reference genes

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