Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g068030.1 Solanum lycopersicum HOM05D004019 ORTHO05D005136 2.4e-75 285.4 147 100.0
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 3.0e-73 278.5 143 99.3
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 1.3e-39 166.8 143 62.9
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 1.4e-38 163.3 143 60.8
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 1.8e-38 162.9 143 60.8
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 4.1e-38 161.8 143 61.5
Lj8C607G10 Lonicera japonica HOM05D004019 ORTHO05D005136 1.6e-37 159.8 140 62.1
Hma1.2p1_0140F.1_g063760 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 5.9e-37 157.9 142 58.5
vmacro11102 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 1.0e-36 157.1 143 58.7
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 1.9e-35 152.9 143 56.6
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 3.2e-35 152.1 143 56.6
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 4.2e-35 151.8 143 58.0
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 5.5e-35 151.4 143 56.6
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 9.4e-35 150.6 143 57.3
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 9.4e-35 150.6 143 54.5
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 1.2e-34 150.2 143 55.2
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 2.1e-34 149.4 143 57.3
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 6.1e-34 147.9 143 55.9
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 6.1e-34 147.9 143 55.9
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 1.8e-33 146.4 143 53.1
QL12p030977 Quercus lobata HOM05D004019 ORTHO05D005136 1.8e-33 146.4 142 56.3
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 1.8e-33 146.4 143 54.5
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 5.2e-33 144.8 143 55.2
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 5.2e-33 144.8 143 53.1
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 6.7e-33 144.4 142 55.6
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 8.8e-33 144.1 143 53.8
Haze_21656 Corylus avellana HOM05D004019 ORTHO05D005136 8.8e-33 144.1 144 55.6
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 8.8e-33 144.1 143 53.1
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 8.8e-33 144.1 143 53.1
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 8.8e-33 144.1 143 51.0
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 1.2e-32 143.7 143 53.8
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 1.2e-32 143.7 143 51.7
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 1.5e-32 143.3 143 51.7
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 2.0e-32 142.9 143 51.7
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 2.0e-32 142.9 143 53.1
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 2.0e-32 142.9 143 53.8
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 3.3e-32 142.1 143 53.8
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 4.4e-32 141.7 143 51.0
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 4.4e-32 141.7 145 55.2
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 5.7e-32 141.4 142 53.5
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 5.7e-32 141.4 143 53.8
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 5.7e-32 141.4 143 51.0
Cpa.g.sc205.19 Carica papaya HOM05D004019 ORTHO05D005136 9.7e-32 140.6 144 51.4
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 1.3e-31 140.2 143 53.8
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 1.7e-31 139.8 143 51.7
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 2.2e-31 139.4 143 53.8
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 3.7e-31 138.7 143 51.0
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 6.3e-31 137.9 144 54.9
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 6.3e-31 137.9 143 51.0
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 1.1e-30 137.1 143 53.1
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 1.4e-30 136.7 143 53.8
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 1.8e-30 136.3 143 51.7
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 3.1e-30 135.6 145 54.5
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 4.1e-30 135.2 143 51.0
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 1.6e-29 133.3 143 49.7
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 2.0e-29 132.9 143 51.7
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 3.5e-29 132.1 143 51.7
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 3.5e-29 132.1 143 51.0
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 4.5e-29 131.7 143 50.3
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 4.5e-29 131.7 143 51.7
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 7.7e-29 131.0 143 51.7
DCAR_006255 Daucus carota HOM05D004019 ORTHO05D005136 1.3e-28 130.2 145 53.8
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 3.8e-28 128.6 143 50.3
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 8.5e-28 127.5 143 49.0
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 4.2e-27 125.2 144 50.0
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 7.2e-27 124.4 143 51.0
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 2.1e-26 122.9 143 49.0
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 2.1e-26 122.9 143 49.7
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 2.7e-26 122.5 143 46.9
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 3.6e-26 122.1 143 48.3
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 1.4e-25 120.2 143 48.3
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 8.8e-25 117.5 143 46.9
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 2.6e-24 115.9 143 46.2
Ah.12g060350 Amaranthus hybridus HOM05D004019 ORTHO05D005136 5.7e-24 114.8 146 45.9
unitig_747.g21874 Utricularia gibba HOM05D004019 ORTHO05D005136 9.8e-24 114.0 143 44.1
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 1.3e-23 113.6 144 47.9
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 1.8e-22 109.8 143 44.8
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 2.0e-21 106.3 143 44.8
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 4.5e-21 105.1 138 46.4
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 1.5e-19 100.1 143 43.4
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 1.5e-19 100.1 143 43.4
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 1.5e-19 100.1 143 43.4
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 1.5e-19 100.1 143 43.4
HPP92_006442 Vanilla planifolia HOM05D004019 ORTHO05D005136 1.9e-19 99.8 142 43.7
SEGI_01785 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 2.5e-19 99.4 147 41.5
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 4.9e-15 85.1 156 31.4
Prupe.5G099400 Prunus persica HOM05D004019 ORTHO05D005136 3.5e-13 79.0 60 63.3
SHI11647 Sapria himalayana HOM05D004019 ORTHO05D005136 1.7e-12 76.6 144 38.2
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 5.0e-12 75.1 159 31.4
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 8.0e-10 67.8 92 46.7
CBR_g31401 Chara braunii HOM05D004019 ORTHO05D005136 3.1e-09 65.9 165 34.5
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 8.9e-09 64.3 30 96.7
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 4.1e-06 55.5 121 28.1


User provided reference genes

Program Settings