Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g068010.2 Solanum lycopersicum HOM05D004019 ORTHO05D005136 0.0e+00 2232.2 1164 100.0
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 0.0e+00 2115.5 1138 97.8
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 1787.7 1145 80.3
Lj8C607G10 Lonicera japonica HOM05D004019 ORTHO05D005136 0.0e+00 1756.9 1145 79.3
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 0.0e+00 1748.0 1145 79.7
Peaxi162Scf00105g00818 Petunia axillaris HOM05D004019 ORTHO05D005136 0.0e+00 1744.2 1123 83.0
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 1741.1 1146 79.1
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 0.0e+00 1730.7 1184 76.5
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 0.0e+00 1728.8 1145 77.6
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 1728.0 1144 77.8
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 0.0e+00 1715.7 1145 77.9
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 0.0e+00 1713.0 1145 77.2
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 0.0e+00 1708.0 1144 76.7
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 0.0e+00 1707.6 1146 77.5
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 0.0e+00 1706.4 1145 76.7
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 0.0e+00 1704.5 1145 77.4
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 0.0e+00 1703.7 1145 76.9
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 0.0e+00 1700.3 1145 77.3
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 0.0e+00 1699.5 1144 76.7
Gohir.D05G051300 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 1698.7 1145 77.2
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 1698.3 1145 77.0
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 0.0e+00 1697.9 1145 77.1
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 0.0e+00 1696.4 1145 76.9
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 0.0e+00 1696.0 1145 76.6
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 0.0e+00 1693.7 1145 77.3
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 0.0e+00 1692.2 1147 76.4
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 0.0e+00 1691.8 1145 76.2
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 0.0e+00 1690.2 1145 77.1
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 0.0e+00 1688.7 1145 76.4
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 1687.2 1158 75.8
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 1683.7 1145 75.7
QL12p030977 Quercus lobata HOM05D004019 ORTHO05D005136 0.0e+00 1682.5 1124 77.3
VMungo1309G1295 Vigna mungo HOM05D004019 ORTHO05D005136 0.0e+00 1682.2 1146 76.1
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 1681.0 1147 75.5
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 0.0e+00 1681.0 1145 75.8
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 0.0e+00 1679.5 1146 75.9
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 0.0e+00 1678.7 1143 75.6
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 0.0e+00 1675.2 1176 74.4
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 1672.1 1146 75.2
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 0.0e+00 1667.9 1143 75.2
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 0.0e+00 1667.5 1146 75.5
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 0.0e+00 1664.0 1285 70.7
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 1660.6 1120 76.3
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 0.0e+00 1648.3 1147 73.8
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 0.0e+00 1647.5 1146 74.5
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 0.0e+00 1642.9 1145 74.0
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 0.0e+00 1619.8 1146 73.6
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 0.0e+00 1616.7 1145 72.1
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 0.0e+00 1614.7 1129 74.0
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 0.0e+00 1612.8 1131 75.3
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 0.0e+00 1610.1 1144 73.4
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 1600.5 1174 72.2
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 0.0e+00 1600.1 1215 68.9
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 1592.0 1174 72.1
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 0.0e+00 1581.6 1145 72.2
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 0.0e+00 1577.4 1147 71.9
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 1574.7 1149 71.5
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 1573.1 1149 70.5
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 1570.1 1149 71.1
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 1564.7 1147 70.7
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 0.0e+00 1560.4 1126 71.8
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 0.0e+00 1540.4 1146 70.5
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 0.0e+00 1540.0 1146 69.9
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 0.0e+00 1535.4 1147 70.4
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 0.0e+00 1535.4 1146 70.0
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 0.0e+00 1533.1 1146 69.9
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 0.0e+00 1526.9 1146 70.0
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 1526.1 1145 69.6
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 1524.6 1145 69.6
Oeu063261.5 Olea europaea HOM05D004019 ORTHO05D005136 0.0e+00 1523.5 1198 68.4
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 0.0e+00 1512.7 1169 68.2
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 0.0e+00 1511.1 1169 68.2
Cpa.g.sc205.26 Carica papaya HOM05D004019 ORTHO05D005136 0.0e+00 1502.6 1098 72.2
vmacro08818 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 0.0e+00 1452.2 1151 70.1
unitig_747.g21875 Utricularia gibba HOM05D004019 ORTHO05D005136 0.0e+00 1432.2 1158 66.2
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 0.0e+00 1426.8 1168 65.8
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 0.0e+00 1412.5 995 74.0
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 0.0e+00 1406.0 1146 67.7
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 0.0e+00 1363.2 996 71.5
DCAR_006256 Daucus carota HOM05D004019 ORTHO05D005136 0.0e+00 1352.8 1190 62.9
FAN20G1524 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 1239.2 853 74.3
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 0.0e+00 1158.3 1174 54.1
Ah.12g060340 Amaranthus hybridus HOM05D004019 ORTHO05D005136 0.0e+00 1155.6 1007 63.0
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 0.0e+00 1139.8 1162 54.6
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 0.0e+00 1118.6 1134 52.7
Gohir.A05G049350 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 1115.9 741 77.2
CDE10G0547 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1103.6 899 63.3
SEGI_05898 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 8.0e-312 1073.5 908 64.2
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 1.1e-308 1063.5 922 61.9
vmacro11105 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 1.3e-288 996.9 672 78.1
AagrBONN_evm.TU.Sc2ySwM_340.130 Anthoceros agrestis HOM05D004019 ORTHO05D005136 1.3e-280 970.3 1142 46.2
HPP92_006443 Vanilla planifolia HOM05D004019 ORTHO05D005136 8.5e-280 967.6 919 59.0
Hma1.2p1_0140F.1_g063770 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 5.7e-276 954.9 685 75.5
CBR_g31401 Chara braunii HOM05D004019 ORTHO05D005136 1.5e-273 946.8 1177 46.1
Haze_21654 Corylus avellana HOM05D004019 ORTHO05D005136 1.1e-250 870.9 609 75.9
Nitab4.5_0000250g0120 Nicotiana tabacum HOM05D004019 ORTHO05D005136 3.5e-225 786.2 824 58.1
Nitab4.5_0002393g0010 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.5e-199 701.0 384 96.1
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 6.5e-179 632.5 441 74.4
Hund02996 Selenicereus undatus HOM05D004019 ORTHO05D005136 8.2e-150 535.8 613 53.8
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 1.1e-146 525.4 340 80.0
Hma1.2p1_0140F.1_g063760 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 5.2e-136 490.0 296 85.5
SHI11646 Sapria himalayana HOM05D004019 ORTHO05D000023 4.9e-118 430.3 437 56.5
Os01g0593000 Oryza sativa ssp. japonica HOM05D004019 ORTHO05D005136 2.5e-114 417.9 264 76.1
vmacro11104 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 1.6e-97 362.1 239 82.8
Nitab4.5_0000250g0090 Nicotiana tabacum HOM05D004019 ORTHO05D005136 2.1e-97 361.7 180 97.8
Hma1.2p1_0140F.1_g063780 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 3.6e-89 334.3 204 84.3
Ah.12g060330 Amaranthus hybridus HOM05D004019 ORTHO05D005136 5.8e-87 327.0 180 86.1
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 6.2e-81 307.0 233 69.5
SEGI_29718 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 2.3e-75 288.5 158 86.7
DCAR_006257 Daucus carota HOM05D004019 ORTHO05D005136 4.3e-74 284.3 151 92.7
Nitab4.5_0000250g0100 Nicotiana tabacum HOM05D004019 ORTHO05D005136 2.0e-71 275.4 338 55.6
Haze_21653 Corylus avellana HOM05D004019 ORTHO05D005136 5.7e-66 257.3 219 61.2
Cfa013229 Carpinus fangiana HOM05D004019 ORTHO05D005136 4.8e-65 254.2 207 63.3
SHI11644 Sapria himalayana HOM05D004019 ORTHO05D000014 1.8e-64 252.3 253 54.5
SHI11640 Sapria himalayana HOM05D004019 ORTHO05D000023 6.7e-43 180.6 252 41.3
Hma1.2p1_0140F.1_g063800 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 1.8e-40 172.6 116 76.7
HanXRQChr03g0075941 Helianthus annuus HOM05D004019 ORTHO05D005136 1.6e-36 159.5 103 79.6
AUR62038490 Chenopodium quinoa HOM05D004019 ORTHO05D005136 1.5e-34 152.9 116 69.8
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.5e-29 136.3 86 82.6
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.6e-28 132.9 74 91.9
MD00G1060000 Malus domestica HOM05D004019 ORTHO05D005136 2.6e-26 125.6 99 69.7
MD08G1211900 Malus domestica HOM05D004019 ORTHO05D005136 2.6e-26 125.6 99 69.7
Haze_21655 Corylus avellana HOM05D004019 ORTHO05D005136 4.4e-26 124.8 78 80.8
PRCOL_00001920 Prasinoderma coloniale HOM05D004019 ORTHO05D005136 2.8e-20 105.5 1252 23.0
Actinidia14324 Actinidia chinensis HOM05D004019 ORTHO05D005136 4.9e-17 94.7 130 52.3
Actinidia36698 Actinidia chinensis HOM05D004019 ORTHO05D005136 1.6e-15 89.7 122 51.6
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 2.7e-15 89.0 51 84.3
Haze_21651 Corylus avellana HOM05D004019 ORTHO05D005136 1.5e-13 83.2 47 83.0
Glyma.04G073626 Glycine max HOM05D004019 ORTHO05D005136 3.3e-13 82.0 51 78.4
Hund02997 Selenicereus undatus HOM05D004019 ORTHO05D005136 9.5e-13 80.5 48 83.3
Actinidia31247 Actinidia chinensis HOM05D004019 ORTHO05D005136 2.1e-12 79.3 72 63.9
Actinidia23592 Actinidia chinensis HOM05D004019 ORTHO05D005136 1.3e-09 70.1 79 60.8
SHI11643 Sapria himalayana HOM05D004019 ORTHO05D035247 1.3e-09 70.1 81 44.4
Medtr3g108370 Medicago truncatula HOM05D004019 ORTHO05D005136 1.4e-08 66.6 153 37.9
Nitab4.5_0005144g0040 Nicotiana tabacum HOM05D004019 ORTHO05D005136 2.4e-08 65.9 70 52.9
FvH4_2g30290 Fragaria vesca HOM05D004019 ORTHO05D035247 9.2e-08 63.9 67 53.7
FAN24G2522 Fragaria x ananassa HOM05D004019 ORTHO05D035247 9.2e-08 63.9 67 53.7
Potri.018G035601 Populus trichocarpa HOM05D004019 ORTHO05D005136 1.2e-07 63.5 61 52.5
TPR.G12424 Trifolium pratense HOM05D004019 ORTHO05D005136 2.0e-07 62.8 67 50.7
Medtr3g107940 Medicago truncatula HOM05D004019 ORTHO05D000015 4.6e-07 61.6 100 41.0


User provided reference genes

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