Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g067870.2 Solanum lycopersicum HOM05D003461 ORTHO05D004386 0.0e+00 2017.3 998 100.0
Sopen08g021790 Solanum pennellii HOM05D003461 ORTHO05D004386 0.0e+00 1989.5 992 99.0
CAN.G21.14 Capsicum annuum HOM05D003461 ORTHO05D004386 0.0e+00 1796.2 997 89.9
Nitab4.5_0000125g0120 Nicotiana tabacum HOM05D003461 ORTHO05D004386 0.0e+00 1764.2 995 88.1
Nitab4.5_0009600g0020 Nicotiana tabacum HOM05D003461 ORTHO05D004386 0.0e+00 1748.8 1001 87.5
Peaxi162Scf00105g01315 Petunia axillaris HOM05D003461 ORTHO05D004386 0.0e+00 1618.6 992 82.1
Dinv35880 Davidia involucrata HOM05D003461 ORTHO05D004386 0.0e+00 1169.5 998 61.4
CSS0003133 Camellia sinensis var. sinensis HOM05D003461 ORTHO05D004386 0.0e+00 1158.7 998 60.4
Cc08_g08280 Coffea canephora HOM05D003461 ORTHO05D004386 0.0e+00 1110.9 998 58.5
Migut.A00272 Erythranthe guttata HOM05D003461 ORTHO05D004386 0.0e+00 1094.0 1005 58.3
Atru.chr7.2323 Acer truncatum HOM05D003461 ORTHO05D004386 1.4e-311 1073.2 1000 56.6
DCAR_006261 Daucus carota HOM05D003461 ORTHO05D004386 4.0e-310 1068.1 1002 56.8
COL.COLO4_24068 Corchorus olitorius HOM05D003461 ORTHO05D004386 1.0e-305 1053.5 999 55.9
Duzib168G0147 Durio zibethinus HOM05D003461 ORTHO05D004386 1.7e-305 1052.7 1002 55.7
TAR383G0906 Trochodendron aralioides HOM05D003461 ORTHO05D004386 2.2e-305 1052.4 1003 56.9
Gohir.D06G048151 Gossypium hirsutum HOM05D003461 ORTHO05D004386 5.5e-304 1047.7 1007 55.6
Thecc.09G143900 Theobroma cacao HOM05D003461 ORTHO05D004386 1.2e-303 1046.6 1001 55.9
Rhsim07G0154200 Rhododendron simsii HOM05D003461 ORTHO05D004386 1.8e-302 1042.7 1015 56.4
FvH4_2g30180 Fragaria vesca HOM05D003461 ORTHO05D004386 3.0e-302 1042.0 993 56.3
Gorai.010G053900 Gossypium raimondii HOM05D003461 ORTHO05D004386 3.0e-302 1042.0 1005 55.6
TWI34G1710 Tripterygium wilfordii HOM05D003461 ORTHO05D004386 3.4e-301 1038.5 995 55.3
Potri.018G034700 Populus trichocarpa HOM05D003461 ORTHO05D004386 4.4e-301 1038.1 1001 55.6
GSVIVG01035727001 Vitis vinifera HOM05D003461 ORTHO05D004386 4.4e-301 1038.1 993 56.3
FAN27G2808 Fragaria x ananassa HOM05D003461 ORTHO05D004386 5.7e-301 1037.7 993 55.6
MD08G1135800 Malus domestica HOM05D003461 ORTHO05D004386 1.7e-300 1036.2 999 55.4
FAN15G0070 Fragaria x ananassa HOM05D003461 ORTHO05D004386 2.2e-300 1035.8 993 55.8
Gohir.A06G048100 Gossypium hirsutum HOM05D003461 ORTHO05D004386 3.7e-300 1035.0 1005 55.4
Haze_21625 Corylus avellana HOM05D003461 ORTHO05D004386 1.4e-299 1033.1 1006 55.0
Prupe.1G466400 Prunus persica HOM05D003461 ORTHO05D004386 1.4e-299 1033.1 1000 55.4
SalBow4G0560 Salvia bowleyana HOM05D003461 ORTHO05D004386 3.1e-299 1031.9 1105 52.8
SGA_v2.0_scaffold27G11498 Striga asiatica HOM05D003461 ORTHO05D004386 5.4e-299 1031.2 1003 55.4
FAN20G1067 Fragaria x ananassa HOM05D003461 ORTHO05D004386 7.0e-299 1030.8 993 55.7
RcHm_v2.0_Chr6g0312731 Rosa chinensis HOM05D003461 ORTHO05D004386 2.0e-298 1029.2 997 55.5
Duzib150G1527 Durio zibethinus HOM05D003461 ORTHO05D004386 2.9e-297 1025.4 1000 55.3
Gohir.A05G010700 Gossypium hirsutum HOM05D003461 ORTHO05D004386 8.0e-295 1017.3 999 55.4
PGR044G2079 Punica granatum HOM05D003461 ORTHO05D004386 2.0e-293 1012.7 992 55.3
Gorai.009G011800 Gossypium raimondii HOM05D003461 ORTHO05D004386 9.8e-293 1010.4 1002 54.6
Ciclev10007226m.g Citrus clementina HOM05D003461 ORTHO05D004386 5.9e-290 1001.1 996 54.0
Eucgr.C02859 Eucalyptus grandis HOM05D003461 ORTHO05D004386 1.2e-287 993.4 991 53.9
CANSAT01G0438 Cannabis sativa HOM05D003461 ORTHO05D004386 2.3e-286 989.2 998 54.2
ECA240G1832 Erigeron canadensis HOM05D003461 ORTHO05D004386 9.2e-283 977.2 991 53.2
Lsat_1_v5_gn_5_45581 Lactuca sativa HOM05D003461 ORTHO05D004386 1.5e-280 969.9 998 52.9
unitig_747.g21880 Utricularia gibba HOM05D003461 ORTHO05D004386 4.7e-279 964.9 1013 51.9
Sp4g05280 Schrenkiella parvula HOM05D003461 ORTHO05D004386 8.0e-279 964.1 996 53.1
Nn2g11834 Nelumbo nucifera HOM05D003461 ORTHO05D004386 1.4e-278 963.4 1008 52.1
EL10Ac2g02534 Beta vulgaris HOM05D003461 ORTHO05D004386 2.2e-276 956.1 1015 51.2
MD15G1115000 Malus domestica HOM05D003461 ORTHO05D004386 2.2e-276 956.1 1002 52.6
Aa31sc76G80 Aethionema arabicum HOM05D003461 ORTHO05D004386 1.9e-275 953.0 996 52.1
Dinv30215 Davidia involucrata HOM05D003461 ORTHO05D004386 5.0e-273 944.9 878 58.3
AL4G17260 Arabidopsis lyrata HOM05D003461 ORTHO05D004386 2.1e-271 939.5 1002 51.9
THA.LOC104819890 Tarenaya hassleriana HOM05D003461 ORTHO05D004386 2.8e-271 939.1 999 51.4
Ah.12g063310 Amaranthus hybridus HOM05D003461 ORTHO05D004386 4.7e-271 938.3 1002 50.9
Thhalv10000008m.g Eutrema salsugineum HOM05D003461 ORTHO05D004386 4.0e-270 935.3 998 51.5
AT2G25660 Arabidopsis thaliana HOM05D003461 ORTHO05D004386 1.2e-269 933.7 994 52.1
Carub.0004s0545 Capsella rubella HOM05D003461 ORTHO05D004386 2.0e-269 932.9 993 51.8
HanXRQChr08g0221141 Helianthus annuus HOM05D003461 ORTHO05D004386 4.4e-269 931.8 990 52.3
A04p19870 Brassica napus HOM05D003461 ORTHO05D004386 3.7e-268 928.7 991 51.4
AUR62024833 Chenopodium quinoa HOM05D003461 ORTHO05D004386 4.1e-267 925.2 1006 51.3
BraA04t17575Z Brassica rapa HOM05D003461 ORTHO05D004386 5.4e-267 924.9 991 51.2
BcaC02g08333 Brassica carinata HOM05D003461 ORTHO05D004386 6.0e-266 921.4 996 51.1
BolC4t27084H Brassica oleracea HOM05D003461 ORTHO05D004386 6.0e-266 921.4 996 51.1
C04p55600 Brassica napus HOM05D003461 ORTHO05D004386 3.0e-265 919.1 996 51.0
PSO063G5065 Papaver somniferum HOM05D003461 ORTHO05D004386 1.5e-264 916.8 1004 50.4
Sc09g0008870 Simmondsia chinensis HOM05D003461 ORTHO05D004386 7.3e-264 914.4 1017 51.1
Gohir.D05G011400 Gossypium hirsutum HOM05D003461 ORTHO05D004386 2.1e-263 912.9 881 55.6
PSO782G2185 Papaver somniferum HOM05D003461 ORTHO05D004386 3.6e-263 912.1 1003 50.3
BcaB06g28084 Brassica carinata HOM05D003461 ORTHO05D004386 4.7e-263 911.8 996 51.1
Aqoxy7G01835 Aquilegia oxysepala HOM05D003461 ORTHO05D004386 2.6e-261 906.0 1012 48.7
Lj5g0000879 Lotus japonicus HOM05D003461 ORTHO05D004386 1.9e-259 899.8 994 49.5
Phvul.001G055800 Phaseolus vulgaris HOM05D003461 ORTHO05D004386 4.1e-259 898.7 967 51.7
Glyma.14G129500 Glycine max HOM05D003461 ORTHO05D004386 5.1e-257 891.7 958 52.2
arahy.Tifrunner.gnm1.ann1.4R6GA4 Arachis hypogaea HOM05D003461 ORTHO05D004386 1.3e-252 877.1 1002 49.6
Sed0017351 Sechium edule HOM05D003461 ORTHO05D004386 1.7e-252 876.7 999 49.6
AUR62032384 Chenopodium quinoa HOM05D003461 ORTHO05D004386 3.2e-251 872.5 998 49.0
Lalb_Chr11g0063991 Lupinus albus HOM05D003461 ORTHO05D004386 9.3e-251 870.9 986 49.7
arahy.Tifrunner.gnm1.ann1.3VS957 Arachis hypogaea HOM05D003461 ORTHO05D004386 1.2e-250 870.5 945 51.3
ClCG05G017220 Citrullus lanatus HOM05D003461 ORTHO05D004386 3.5e-250 869.0 1000 48.5
MELO3C003666.2 Cucumis melo HOM05D003461 ORTHO05D004386 3.0e-249 865.9 1001 48.5
Glyma.17G204000 Glycine max HOM05D003461 ORTHO05D004386 5.1e-249 865.1 962 51.6
CsaV3_3G046700 Cucumis sativus L. HOM05D003461 ORTHO05D004386 3.1e-246 855.9 1005 48.1
Medtr1g010300 Medicago truncatula HOM05D003461 ORTHO05D004386 7.6e-245 851.3 991 47.4
FAN24G1347 Fragaria x ananassa HOM05D003461 ORTHO05D004386 9.9e-245 850.9 1306 40.7
Oeu019417.3 Olea europaea HOM05D003461 ORTHO05D004386 1.3e-233 813.9 921 50.3
TPR.G20094 Trifolium pratense HOM05D003461 ORTHO05D004386 5.6e-232 808.5 961 47.5
Actinidia14640 Actinidia chinensis HOM05D003461 ORTHO05D004386 6.9e-230 801.6 891 51.0
AUR62011223 Chenopodium quinoa HOM05D003461 ORTHO05D004386 2.2e-228 796.6 998 46.5
Psat6g031040 Pisum sativum HOM05D003461 ORTHO05D004386 1.1e-227 794.3 1000 46.5
ATR0037G074 Amborella trichopoda HOM05D003461 ORTHO05D004386 1.9e-227 793.5 945 46.1
Os01g0179400 Oryza sativa ssp. japonica HOM05D003461 ORTHO05D004386 2.7e-226 789.6 910 47.5
Glyma.04G072400 Glycine max HOM05D003461 ORTHO05D004386 2.8e-223 779.6 936 47.4
Glyma.06G073700 Glycine max HOM05D003461 ORTHO05D004386 4.8e-223 778.9 989 46.3
Zm00001eb122270 Zea mays HOM05D003461 ORTHO05D004386 1.5e-221 773.9 902 47.2
Lj1g0021913 Lotus japonicus HOM05D003461 ORTHO05D004386 1.4e-217 760.8 938 45.4
Phvul.009G098100 Phaseolus vulgaris HOM05D003461 ORTHO05D004386 1.7e-215 753.8 949 45.8
Medtr3g108080 Medicago truncatula HOM05D003461 ORTHO05D004386 1.6e-210 737.3 933 44.7
Psat5g027760 Pisum sativum HOM05D003461 ORTHO05D004386 1.6e-210 737.3 955 44.8
HPP92_015178 Vanilla planifolia HOM05D003461 ORTHO05D004386 2.1e-210 736.9 932 45.3
CiPaw.07G217500 Carya illinoinensis HOM05D003461 ORTHO05D004386 2.7e-189 666.8 790 48.2
Ca_15696_v3 Cicer arietinum L. HOM05D003461 ORTHO05D004386 1.7e-183 647.5 845 45.4
Hund03002 Selenicereus undatus HOM05D003461 ORTHO05D004386 3.3e-171 606.7 839 42.8
VMungo0647G1896 Vigna mungo HOM05D003461 ORTHO05D004386 7.3e-171 605.5 830 44.3
VMungo1309G0474 Vigna mungo HOM05D003461 ORTHO05D004386 3.0e-169 600.1 815 43.4
Sabra18G0035500 Salix brachista HOM05D003461 ORTHO05D004386 1.6e-165 587.8 813 43.8
Manes.13G069700 Manihot esculenta HOM05D003461 ORTHO05D004386 1.5e-163 581.3 321 83.2
Lj7C712G2 Lonicera japonica HOM05D003461 ORTHO05D004386 2.1e-162 577.4 707 46.7
Cfa013213 Carpinus fangiana HOM05D003461 ORTHO05D004386 4.2e-142 510.0 703 43.5
QL12p031223 Quercus lobata HOM05D003461 ORTHO05D004386 2.4e-134 484.2 712 43.7
vmacro05447 Vaccinium macrocarpon HOM05D003461 ORTHO05D004386 1.0e-132 478.8 280 80.0
Mapoly0004s0170 Marchantia polymorpha HOM05D003461 ORTHO05D004386 1.9e-131 474.6 1030 31.8
Actinidia15711 Actinidia chinensis HOM05D003461 ORTHO05D004386 1.6e-130 471.5 267 80.9
AagrBONN_evm.TU.Sc2ySwM_228.5632 Anthoceros agrestis HOM05D003461 ORTHO05D004386 9.0e-129 465.7 905 35.8
SEGI_20580 Sequoiadendron giganteum HOM05D003461 ORTHO05D004386 5.8e-128 463.0 442 52.9
Lj7C712G4 Lonicera japonica HOM05D003461 ORTHO05D004386 1.2e-125 455.3 301 73.1
Actinidia15712 Actinidia chinensis HOM05D003461 ORTHO05D004386 9.9e-120 435.6 587 46.2
Pp3c4_150 Physcomitrium patens HOM05D003461 ORTHO05D004386 2.3e-116 424.5 877 32.7
TPR.G34693 Trifolium pratense HOM05D003461 ORTHO05D004386 1.7e-111 408.3 807 34.6
SMO347G0057 Selaginella moellendorffii HOM05D003461 ORTHO05D004386 3.1e-97 360.9 884 29.9
CARHR115590 Cardamine hirsuta HOM05D003461 ORTHO05D004386 1.5e-96 358.6 204 82.4
HPP92_015152 Vanilla planifolia HOM05D003461 ORTHO05D004386 2.2e-95 354.8 295 59.7
Ca_12907_v3 Cicer arietinum L. HOM05D003461 ORTHO05D004386 6.5e-87 326.6 581 37.3
TPR.G27605 Trifolium pratense HOM05D003461 ORTHO05D004386 4.5e-80 303.9 191 74.3
Sabra18G0035400 Salix brachista HOM05D003461 ORTHO05D004386 1.9e-78 298.5 192 74.5
CBR_g20101 Chara braunii HOM05D003461 ORTHO05D004386 1.8e-76 292.0 321 45.8
Lsat_1_v5_gn_2_27900 Lactuca sativa HOM05D003461 ORTHO05D004386 2.0e-75 288.5 261 55.6
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 2.0e-75 288.5 261 55.6
Lsat_1_v5_gn_5_111480 Lactuca sativa HOM05D003461 ORTHO05D004386 2.0e-75 288.5 261 55.6
Lsat_1_v5_gn_4_58000 Lactuca sativa HOM05D003461 ORTHO05D004386 7.0e-73 280.0 261 54.4
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 1.3e-71 275.8 261 53.6
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 3.3e-62 244.6 188 64.9
Cpa.g.c45312 Carica papaya HOM05D003461 ORTHO05D004386 1.1e-57 229.6 232 52.2
Cpa.g.sc91.7 Carica papaya HOM05D003461 ORTHO05D004386 1.8e-52 212.2 126 81.7
SEGI_09564 Sequoiadendron giganteum HOM05D003461 ORTHO05D004386 1.6e-45 189.1 127 71.7
VMungo1309G1485 Vigna mungo HOM05D003461 ORTHO05D004386 6.2e-45 187.2 127 68.5
SEGI_30777 Sequoiadendron giganteum HOM05D003461 ORTHO05D004386 2.6e-43 181.8 332 37.0
Cfa013212 Carpinus fangiana HOM05D003461 ORTHO05D004386 2.3e-39 168.7 121 62.8
MBI14_g07933_MAGBIO Magnolia biondii HOM05D001400 ORTHO05D001795 2.3e-39 168.7 108 74.1
Lsat_1_v5_gn_3_11400 Lactuca sativa HOM05D003461 ORTHO05D004386 3.6e-37 161.4 119 68.1
MBI03_g45443_MAGBIO Magnolia biondii HOM05D003461 ORTHO05D004386 6.2e-29 134.0 86 74.4
Hma1.2p1_0175F.1_g077280 Hydrangea macrophylla HOM05D003461 ORTHO05D004386 1.4e-25 122.9 60 93.3
Cpa.g.sc91.8 Carica papaya HOM05D003461 ORTHO05D004386 8.4e-18 97.1 47 87.2
vmacro14339 Vaccinium macrocarpon HOM05D005386 ORTHO05D006981 3.3e-14 85.1 60 65.0
Lsat_1_v5_gn_7_102601 Lactuca sativa HOM05D002374 ORTHO05D014488 4.8e-13 81.3 100 40.0
Hund28667 Selenicereus undatus HOM05D003461 ORTHO05D004386 5.1e-07 61.2 28 92.9
Hund28681 Selenicereus undatus HOM05D003461 ORTHO05D004386 5.1e-07 61.2 28 92.9


User provided reference genes

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