Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g067860.2 Solanum lycopersicum HOM05D003461 ORTHO05D004386 0.0e+00 2412.5 1238 100.0
Sopen08g021790 Solanum pennellii HOM05D003461 ORTHO05D004386 0.0e+00 2362.8 1243 97.8
CAN.G21.14 Capsicum annuum HOM05D003461 ORTHO05D004386 0.0e+00 2275.4 1243 94.0
Nitab4.5_0009600g0030 Nicotiana tabacum HOM05D003461 ORTHO05D004386 0.0e+00 2251.5 1255 92.4
Dinv30215 Davidia involucrata HOM05D003461 ORTHO05D004386 0.0e+00 1946.4 1243 79.8
Lj7C712G4 Lonicera japonica HOM05D003461 ORTHO05D004386 0.0e+00 1946.0 1243 79.7
Oeu019417.3 Olea europaea HOM05D003461 ORTHO05D004386 0.0e+00 1940.6 1243 78.6
Cc08_g08280 Coffea canephora HOM05D003461 ORTHO05D004386 0.0e+00 1928.7 1243 79.5
Dinv35880 Davidia involucrata HOM05D003461 ORTHO05D004386 0.0e+00 1904.0 1222 79.1
DCAR_006261 Daucus carota HOM05D003461 ORTHO05D004386 0.0e+00 1903.6 1243 78.1
Migut.A00272 Erythranthe guttata HOM05D003461 ORTHO05D004386 0.0e+00 1897.5 1243 77.4
Atru.chr7.2323 Acer truncatum HOM05D003461 ORTHO05D004386 0.0e+00 1878.6 1244 77.4
SGA_v2.0_scaffold27G11498 Striga asiatica HOM05D003461 ORTHO05D004386 0.0e+00 1875.9 1248 76.8
Thecc.09G143900 Theobroma cacao HOM05D003461 ORTHO05D004386 0.0e+00 1857.0 1244 76.7
Manes.13G069700 Manihot esculenta HOM05D003461 ORTHO05D004386 0.0e+00 1852.4 1244 76.0
CSS0003133 Camellia sinensis var. sinensis HOM05D003461 ORTHO05D004386 0.0e+00 1849.3 1243 76.5
MD08G1135800 Malus domestica HOM05D003461 ORTHO05D004386 0.0e+00 1843.6 1244 76.0
COL.COLO4_24068 Corchorus olitorius HOM05D003461 ORTHO05D004386 0.0e+00 1843.2 1244 76.3
Ciclev10007226m.g Citrus clementina HOM05D003461 ORTHO05D004386 0.0e+00 1838.2 1245 76.1
TAR383G0906 Trochodendron aralioides HOM05D003461 ORTHO05D004386 0.0e+00 1836.6 1244 75.7
Prupe.1G466400 Prunus persica HOM05D003461 ORTHO05D004386 0.0e+00 1835.5 1244 75.8
RcHm_v2.0_Chr6g0312731 Rosa chinensis HOM05D003461 ORTHO05D004386 0.0e+00 1834.7 1245 75.7
Haze_21625 Corylus avellana HOM05D003461 ORTHO05D004386 0.0e+00 1830.1 1244 76.1
Cpa.g.sc91.7 Carica papaya HOM05D003461 ORTHO05D004386 0.0e+00 1824.7 1244 74.7
Gorai.010G053900 Gossypium raimondii HOM05D003461 ORTHO05D004386 0.0e+00 1822.8 1245 75.6
Gohir.A06G048100 Gossypium hirsutum HOM05D003461 ORTHO05D004386 0.0e+00 1822.0 1245 75.7
PGR044G2079 Punica granatum HOM05D003461 ORTHO05D004386 0.0e+00 1812.3 1243 74.4
Gorai.009G011800 Gossypium raimondii HOM05D003461 ORTHO05D004386 0.0e+00 1812.0 1244 74.9
Sc09g0008870 Simmondsia chinensis HOM05D003461 ORTHO05D004386 0.0e+00 1812.0 1245 74.5
ECA240G1832 Erigeron canadensis HOM05D003461 ORTHO05D004386 0.0e+00 1810.4 1244 74.8
Gohir.A05G010700 Gossypium hirsutum HOM05D003461 ORTHO05D004386 0.0e+00 1810.4 1244 75.2
Gohir.D05G011400 Gossypium hirsutum HOM05D003461 ORTHO05D004386 0.0e+00 1810.4 1244 74.8
TWI34G1710 Tripterygium wilfordii HOM05D003461 ORTHO05D004386 0.0e+00 1810.4 1244 74.4
Nn2g11834 Nelumbo nucifera HOM05D003461 ORTHO05D004386 0.0e+00 1809.7 1246 74.2
FvH4_2g30180 Fragaria vesca HOM05D003461 ORTHO05D004386 0.0e+00 1808.5 1246 75.0
FAN27G2808 Fragaria x ananassa HOM05D003461 ORTHO05D004386 0.0e+00 1808.5 1245 74.7
Gohir.D06G048050 Gossypium hirsutum HOM05D003461 ORTHO05D004386 0.0e+00 1808.1 1237 75.5
FAN15G0070 Fragaria x ananassa HOM05D003461 ORTHO05D004386 0.0e+00 1804.3 1257 74.2
FAN20G1067 Fragaria x ananassa HOM05D003461 ORTHO05D004386 0.0e+00 1798.9 1245 74.3
Potri.018G034700 Populus trichocarpa HOM05D003461 ORTHO05D004386 0.0e+00 1796.6 1247 74.7
Rhsim07G0154200 Rhododendron simsii HOM05D003461 ORTHO05D004386 0.0e+00 1793.9 1355 70.0
unitig_747.g21880 Utricularia gibba HOM05D003461 ORTHO05D004386 0.0e+00 1792.3 1243 73.1
Duzib150G1527 Durio zibethinus HOM05D003461 ORTHO05D004386 0.0e+00 1784.6 1246 73.8
GSVIVG01035727001 Vitis vinifera HOM05D003461 ORTHO05D004386 0.0e+00 1783.1 1246 74.1
SalBow4G0560 Salvia bowleyana HOM05D003461 ORTHO05D004386 0.0e+00 1782.7 1303 70.8
Lsat_1_v5_gn_5_45581 Lactuca sativa HOM05D003461 ORTHO05D004386 0.0e+00 1780.4 1269 74.1
Sabra18G0035400 Salix brachista HOM05D003461 ORTHO05D004386 0.0e+00 1772.3 1270 72.6
Aqoxy7G01835 Aquilegia oxysepala HOM05D003461 ORTHO05D004386 0.0e+00 1767.7 1244 72.4
Hund28667 Selenicereus undatus HOM05D003461 ORTHO05D004386 0.0e+00 1759.6 1243 72.2
Hund28681 Selenicereus undatus HOM05D003461 ORTHO05D004386 0.0e+00 1759.6 1243 72.2
Sp4g05280 Schrenkiella parvula HOM05D003461 ORTHO05D004386 0.0e+00 1752.3 1246 71.7
THA.LOC104819890 Tarenaya hassleriana HOM05D003461 ORTHO05D004386 0.0e+00 1751.5 1246 72.0
BcaB06g28084 Brassica carinata HOM05D003461 ORTHO05D004386 0.0e+00 1750.7 1244 71.5
CANSAT01G0438 Cannabis sativa HOM05D003461 ORTHO05D004386 0.0e+00 1749.9 1246 72.6
Thhalv10000008m.g Eutrema salsugineum HOM05D003461 ORTHO05D004386 0.0e+00 1749.9 1244 71.6
BcaC02g08333 Brassica carinata HOM05D003461 ORTHO05D004386 0.0e+00 1748.4 1244 71.5
Ah.12g063310 Amaranthus hybridus HOM05D003461 ORTHO05D004386 0.0e+00 1747.3 1243 71.7
A04p19870 Brassica napus HOM05D003461 ORTHO05D004386 0.0e+00 1745.7 1245 71.6
AL4G17260 Arabidopsis lyrata HOM05D003461 ORTHO05D004386 0.0e+00 1745.3 1244 71.5
HanXRQChr08g0221141 Helianthus annuus HOM05D003461 ORTHO05D004386 0.0e+00 1744.6 1250 73.0
Eucgr.C02859 Eucalyptus grandis HOM05D003461 ORTHO05D004386 0.0e+00 1743.4 1243 71.9
Lj5g0000879 Lotus japonicus HOM05D003461 ORTHO05D004386 0.0e+00 1741.9 1248 71.7
C04p55600 Brassica napus HOM05D003461 ORTHO05D004386 0.0e+00 1740.7 1246 71.3
BraA04t17575Z Brassica rapa HOM05D003461 ORTHO05D004386 0.0e+00 1738.8 1254 71.1
CARHR115590 Cardamine hirsuta HOM05D003461 ORTHO05D004386 0.0e+00 1736.5 1244 71.4
AUR62024833 Chenopodium quinoa HOM05D003461 ORTHO05D004386 0.0e+00 1736.5 1257 71.4
BolC4t27084H Brassica oleracea HOM05D003461 ORTHO05D004386 0.0e+00 1731.8 1258 70.7
PSO063G5065 Papaver somniferum HOM05D003461 ORTHO05D004386 0.0e+00 1731.8 1245 71.8
Lalb_Chr11g0063991 Lupinus albus HOM05D003461 ORTHO05D004386 0.0e+00 1731.1 1248 70.8
PSO782G2185 Papaver somniferum HOM05D003461 ORTHO05D004386 0.0e+00 1730.3 1245 71.6
Carub.0004s0545 Capsella rubella HOM05D003461 ORTHO05D004386 0.0e+00 1727.6 1244 71.1
Phvul.001G055800 Phaseolus vulgaris HOM05D003461 ORTHO05D004386 0.0e+00 1727.2 1250 70.9
Glyma.17G204000 Glycine max HOM05D003461 ORTHO05D004386 0.0e+00 1723.8 1250 71.0
AT2G25660 Arabidopsis thaliana HOM05D003461 ORTHO05D004386 0.0e+00 1719.5 1244 70.7
Aa31sc76G80 Aethionema arabicum HOM05D003461 ORTHO05D004386 0.0e+00 1718.0 1244 70.4
Medtr1g010300 Medicago truncatula HOM05D003461 ORTHO05D004386 0.0e+00 1714.5 1248 70.6
arahy.Tifrunner.gnm1.ann1.3VS957 Arachis hypogaea HOM05D003461 ORTHO05D004386 0.0e+00 1693.3 1265 69.6
FAN24G1347 Fragaria x ananassa HOM05D003461 ORTHO05D004386 0.0e+00 1690.6 1348 67.3
EL10Ac2g02534 Beta vulgaris HOM05D003461 ORTHO05D004386 0.0e+00 1682.9 1243 70.0
arahy.Tifrunner.gnm1.ann1.4R6GA4 Arachis hypogaea HOM05D003461 ORTHO05D004386 0.0e+00 1680.2 1251 69.7
Psat6g031040 Pisum sativum HOM05D003461 ORTHO05D004386 0.0e+00 1679.8 1256 69.6
Duzib168G0147 Durio zibethinus HOM05D003461 ORTHO05D004386 0.0e+00 1677.9 1244 70.7
Sed0017351 Sechium edule HOM05D003461 ORTHO05D004386 0.0e+00 1676.0 1245 69.6
TPR.G20094 Trifolium pratense HOM05D003461 ORTHO05D004386 0.0e+00 1671.4 1256 69.2
AUR62032384 Chenopodium quinoa HOM05D003461 ORTHO05D004386 0.0e+00 1662.9 1246 69.4
ClCG05G017220 Citrullus lanatus HOM05D003461 ORTHO05D004386 0.0e+00 1651.7 1246 69.3
MELO3C003666.2 Cucumis melo HOM05D003461 ORTHO05D004386 0.0e+00 1635.9 1276 67.2
Actinidia15711 Actinidia chinensis HOM05D003461 ORTHO05D004386 0.0e+00 1629.8 1244 69.7
CsaV3_3G046700 Cucumis sativus L. HOM05D003461 ORTHO05D004386 0.0e+00 1628.6 1269 66.9
Peaxi162Scf00105g01316 Petunia axillaris HOM05D003461 ORTHO05D004386 0.0e+00 1605.1 885 92.0
HPP92_015152 Vanilla planifolia HOM05D003461 ORTHO05D004386 0.0e+00 1593.2 1246 66.1
Os01g0179400 Oryza sativa ssp. japonica HOM05D003461 ORTHO05D004386 0.0e+00 1574.3 1249 64.1
ATR0037G074 Amborella trichopoda HOM05D003461 ORTHO05D004386 0.0e+00 1566.6 1245 65.1
Zm00001eb122270 Zea mays HOM05D003461 ORTHO05D004386 0.0e+00 1556.6 1253 63.6
Glyma.06G073700 Glycine max HOM05D003461 ORTHO05D004386 0.0e+00 1533.5 1240 63.6
Glyma.04G072400 Glycine max HOM05D003461 ORTHO05D004386 0.0e+00 1520.4 1235 64.5
Lj1g0021913 Lotus japonicus HOM05D003461 ORTHO05D004386 0.0e+00 1495.3 1233 63.3
VMungo1309G1485 Vigna mungo HOM05D003461 ORTHO05D004386 0.0e+00 1477.6 1239 62.8
VMungo0647G2469 Vigna mungo HOM05D003461 ORTHO05D004386 0.0e+00 1475.3 1110 68.0
vmacro05447 Vaccinium macrocarpon HOM05D003461 ORTHO05D004386 0.0e+00 1474.9 964 76.2
Medtr3g108080 Medicago truncatula HOM05D003461 ORTHO05D004386 0.0e+00 1470.3 1239 62.2
Nitab4.5_0000125g0130 Nicotiana tabacum HOM05D003461 ORTHO05D004386 0.0e+00 1451.0 991 78.2
Psat5g027760 Pisum sativum HOM05D003461 ORTHO05D004386 0.0e+00 1429.1 1236 61.2
MD15G1115200 Malus domestica HOM05D003461 ORTHO05D004386 0.0e+00 1360.9 937 75.2
CiPaw.07G217600 Carya illinoinensis HOM05D003461 ORTHO05D004386 0.0e+00 1297.7 855 78.0
Ca_15696_v3 Cicer arietinum L. HOM05D003461 ORTHO05D004386 0.0e+00 1285.8 1189 58.3
TPR.G34693 Trifolium pratense HOM05D003461 ORTHO05D004386 0.0e+00 1208.7 1043 61.8
Mapoly0004s0170 Marchantia polymorpha HOM05D003461 ORTHO05D004386 0.0e+00 1206.8 1271 51.9
Glyma.14G129400 Glycine max HOM05D003461 ORTHO05D004386 0.0e+00 1205.3 858 72.1
Phvul.009G098100 Phaseolus vulgaris HOM05D003461 ORTHO05D004386 0.0e+00 1154.8 960 62.1
Pp3c4_150 Physcomitrium patens HOM05D003461 ORTHO05D004386 0.0e+00 1148.3 1298 49.8
SMO347G0057 Selaginella moellendorffii HOM05D003461 ORTHO05D004386 9.2e-309 1063.9 1247 48.0
CBR_g20101 Chara braunii HOM05D003461 ORTHO05D004386 1.5e-298 1030.0 1347 45.9
Actinidia14640 Actinidia chinensis HOM05D003461 ORTHO05D004386 4.9e-278 961.8 651 75.0
AagrBONN_evm.TU.Sc2ySwM_228.5632 Anthoceros agrestis HOM05D003461 ORTHO05D004386 1.8e-275 953.4 1061 49.4
Gohir.D06G048151 Gossypium hirsutum HOM05D003461 ORTHO05D004386 3.1e-264 916.0 638 73.7
Actinidia14639 Actinidia chinensis HOM05D003461 ORTHO05D004386 8.5e-246 854.7 556 79.9
SEGI_10354 Sequoiadendron giganteum HOM05D003461 ORTHO05D004386 1.8e-203 714.1 664 54.8
CDE07G1701 Ceratophyllum demersum HOM05D003461 ORTHO05D004386 2.6e-202 710.3 524 66.2
Peaxi162Scf00105g00133 Petunia axillaris HOM05D003461 ORTHO05D004386 9.6e-165 585.5 348 89.4
MCO11G459 Micromonas commoda HOM05D003461 ORTHO05D004386 3.6e-143 513.8 1092 31.3
AL4G17180 Arabidopsis lyrata HOM05D003461 ORTHO05D004386 7.2e-128 463.0 393 66.2
AUR62011223 Chenopodium quinoa HOM05D003461 ORTHO05D004386 1.8e-126 458.4 389 61.4
Glyma.14G129500 Glycine max HOM05D003461 ORTHO05D004386 1.5e-125 455.3 351 66.1
Nitab4.5_0000125g0120 Nicotiana tabacum HOM05D003461 ORTHO05D004386 4.5e-114 417.2 230 90.4
CDE07G0137 Ceratophyllum demersum HOM05D003461 ORTHO05D004386 5.9e-114 416.8 273 81.0
MD15G1115000 Malus domestica HOM05D003461 ORTHO05D004386 1.5e-109 402.1 308 66.6
AL4G17190 Arabidopsis lyrata HOM05D003461 ORTHO05D004386 3.2e-107 394.4 276 69.2
SEGI_09564 Sequoiadendron giganteum HOM05D003461 ORTHO05D004386 1.3e-84 319.3 362 47.8
SEGI_20580 Sequoiadendron giganteum HOM05D003461 ORTHO05D004386 7.6e-77 293.5 346 46.8
TPR.G27605 Trifolium pratense HOM05D003461 ORTHO05D004386 4.0e-62 244.6 232 55.6
VMungo0647G2587 Vigna mungo HOM05D003461 ORTHO05D004386 2.6e-61 241.9 140 89.3
Zm00001eb088480 Zea mays HOM05D003461 ORTHO05D004386 1.5e-53 216.1 117 93.2
HPP92_015178 Vanilla planifolia HOM05D003461 ORTHO05D004386 1.3e-47 196.4 349 36.1
Zm00001eb305240 Zea mays HOM05D003461 ORTHO05D004386 4.1e-46 191.4 107 91.6
HPP92_015177 Vanilla planifolia HOM05D003461 ORTHO05D004386 3.6e-42 178.3 186 56.5
Lsat_1_v5_gn_9_70541 Lactuca sativa HOM05D003461 ORTHO05D004386 7.9e-34 150.6 137 59.9
Aqoxy7G02104 Aquilegia oxysepala HOM05D003461 ORTHO05D005897 8.2e-31 140.6 109 66.1
SEGI_12849 Sequoiadendron giganteum HOM05D003461 ORTHO05D004386 2.0e-29 136.0 96 75.0
Lsat_1_v5_gn_4_41661 Lactuca sativa HOM05D003461 ORTHO05D004386 2.6e-29 135.6 98 70.4
Cre05.g243150 Chlamydomonas reinhardtii HOM05D003461 ORTHO05D004386 3.8e-28 131.7 678 21.7
Gorai.013G159000 Gossypium raimondii HOM05D003461 ORTHO05D004386 3.6e-26 125.2 87 77.0
Gohir.D10G105800 Gossypium hirsutum HOM05D003461 ORTHO05D004386 6.1e-26 124.4 81 80.2
Gohir.D13G142100 Gossypium hirsutum HOM05D003461 ORTHO05D004386 1.4e-25 123.2 85 76.5
Lsat_1_v5_gn_9_53460 Lactuca sativa HOM05D003461 ORTHO05D004386 1.4e-25 123.2 98 67.3
Lsat_1_v5_gn_0_34461 Lactuca sativa HOM05D003461 ORTHO05D004386 2.0e-24 119.4 75 72.0
Gohir.D01G114000 Gossypium hirsutum HOM05D003461 ORTHO05D004386 2.2e-23 115.9 69 85.5
RcHm_v2.0_Chr1g0381071 Rosa chinensis HOM05D003461 ORTHO05D004386 8.5e-20 104.0 57 87.7
VMungo1127G1644 Vigna mungo HOM05D003461 ORTHO05D004386 1.9e-19 102.8 64 73.4
RcHm_v2.0_Chr4g0412921 Rosa chinensis HOM05D003461 ORTHO05D004386 5.5e-19 101.3 57 86.0
VMungo0647G0881 Vigna mungo HOM05D003461 ORTHO05D004386 2.0e-16 92.8 124 47.6
Potri.006G246401 Populus trichocarpa HOM05D003461 ORTHO05D004386 1.4e-14 86.7 54 83.3
Lsat_1_v5_gn_9_113480 Lactuca sativa HOM05D003461 ORTHO05D004386 1.7e-12 79.7 63 68.3
Lsat_1_v5_gn_3_38460 Lactuca sativa HOM05D003461 ORTHO05D014082 7.2e-11 74.3 77 57.1
MBI14_g27819_MAGBIO Magnolia biondii HOM05D004897 ORTHO05D022889 7.5e-08 64.3 52 61.5
MBI19_g30558_MAGBIO Magnolia biondii HOM05D003461 ORTHO05D022889 4.8e-07 61.6 45 68.9


User provided reference genes

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