Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g067810.3 Solanum lycopersicum HOM05D004036 ORTHO05D004576 1.5e-101 372.9 191 100.0
Sopen08g021750 Solanum pennellii HOM05D004036 ORTHO05D004576 5.4e-99 364.4 191 97.4
PGSC0003DMG400033628 Solanum tuberosum HOM05D004036 ORTHO05D004576 1.5e-96 356.3 191 95.8
Nitab4.5_0006579g0060 Nicotiana tabacum HOM05D004036 ORTHO05D004576 1.3e-84 316.6 192 85.4
Nitab4.5_0000125g0270 Nicotiana tabacum HOM05D004036 ORTHO05D004576 1.7e-84 316.2 192 85.4
CAN.G21.9 Capsicum annuum HOM05D004036 ORTHO05D004576 6.4e-84 314.3 191 85.3
Peaxi162Scf00105g01426 Petunia axillaris HOM05D004036 ORTHO05D004576 2.4e-83 312.4 192 84.4
Hma1.2p1_0003F.1_g003650 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 1.0e-33 147.5 182 45.1
Hma1.2p1_0175F.1_g077210 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 1.0e-33 147.5 184 48.9
COL.COLO4_24066 Corchorus olitorius HOM05D004036 ORTHO05D004576 1.4e-33 147.1 204 45.6
Atru.chr7.2325 Acer truncatum HOM05D004036 ORTHO05D004576 8.8e-33 144.4 190 44.7
Ciclev10009480m.g Citrus clementina HOM05D004036 ORTHO05D004576 8.8e-33 144.4 188 48.4
Migut.E01501 Erythranthe guttata HOM05D004036 ORTHO05D004576 1.1e-32 144.1 194 45.9
Oeu045176.1 Olea europaea HOM05D004036 ORTHO05D004576 1.1e-32 144.1 201 45.8
SGA_v2.0_scaffold163G38098 Striga asiatica HOM05D004036 ORTHO05D004576 4.4e-32 142.1 192 45.3
HanXRQChr13g0409481 Helianthus annuus HOM05D004036 ORTHO05D004576 5.7e-32 141.7 174 48.9
Duzib150G0431 Durio zibethinus HOM05D004036 ORTHO05D004576 6.3e-31 138.3 204 41.7
Gohir.A06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 6.3e-31 138.3 204 43.1
Gohir.D06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 6.3e-31 138.3 204 43.1
Cc08_g08300 Coffea canephora HOM05D004036 ORTHO05D004576 8.2e-31 137.9 199 46.7
MSTRG.14001 Avicennia marina HOM05D004036 ORTHO05D004576 1.1e-30 137.5 207 44.0
Manes.03G064800 Manihot esculenta HOM05D004036 ORTHO05D004576 1.1e-30 137.5 199 41.7
Duzib187G1985 Durio zibethinus HOM05D004036 ORTHO05D004576 1.4e-30 137.1 205 42.4
Sabra18G0035300 Salix brachista HOM05D004036 ORTHO05D004576 1.4e-30 137.1 185 43.2
SalBow8G4507 Salvia bowleyana HOM05D004036 ORTHO05D004576 1.4e-30 137.1 196 45.9
SalBow8G4816 Salvia bowleyana HOM05D004036 ORTHO05D004576 1.4e-30 137.1 196 45.9
RcHm_v2.0_Chr6g0312751 Rosa chinensis HOM05D004036 ORTHO05D004576 1.8e-30 136.7 187 44.4
DCAR_003061 Daucus carota HOM05D004036 ORTHO05D004576 2.4e-30 136.3 193 45.6
Prupe.1G466700 Prunus persica HOM05D004036 ORTHO05D004576 4.1e-30 135.6 187 44.9
Manes.16G068200 Manihot esculenta HOM05D004036 ORTHO05D004576 6.9e-30 134.8 194 43.8
FvH4_2g30160 Fragaria vesca HOM05D004036 ORTHO05D004576 1.2e-29 134.0 193 44.0
FAN15G1681 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.2e-29 134.0 193 44.0
FAN24G0425 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.2e-29 134.0 193 44.0
FAN27G0504 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.5e-29 133.7 193 44.0
ECA240G1837 Erigeron canadensis HOM05D004036 ORTHO05D004576 2.0e-29 133.3 197 44.7
FAN20G2367 Fragaria x ananassa HOM05D004036 ORTHO05D004576 3.4e-29 132.5 193 44.6
Lsat_1_v5_gn_3_108141 Lactuca sativa HOM05D004036 ORTHO05D004576 4.5e-29 132.1 162 48.8
Thecc.09G144100 Theobroma cacao HOM05D004036 ORTHO05D004576 1.3e-28 130.6 204 41.2
QL12p031289 Quercus lobata HOM05D004036 ORTHO05D004576 2.9e-28 129.4 190 43.2
Cfa013210 Carpinus fangiana HOM05D004036 ORTHO05D004576 5.0e-28 128.6 191 41.4
TAR624G0048 Trochodendron aralioides HOM05D004036 ORTHO05D004576 1.1e-27 127.5 210 39.5
vmacro05446 Vaccinium macrocarpon HOM05D004036 ORTHO05D004576 1.9e-27 126.7 221 40.7
Sabra06G0192900 Salix brachista HOM05D004036 ORTHO05D004576 2.5e-27 126.3 195 43.1
Potri.006G246600 Populus trichocarpa HOM05D004036 ORTHO05D004576 3.2e-27 125.9 185 41.6
Gohir.D09G022200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 7.2e-27 124.8 188 39.4
Gorai.009G011700 Gossypium raimondii HOM05D004036 ORTHO05D004576 7.2e-27 124.8 188 39.9
Gohir.D05G335100 Gossypium hirsutum HOM05D004036 ORTHO05D004576 9.4e-27 124.4 188 39.9
Gohir.D12G195700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 9.4e-27 124.4 193 39.9
TWI63G0992 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 9.4e-27 124.4 189 43.4
Gohir.A05G010600 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.2e-26 124.0 188 40.4
Gohir.A12G126300 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.7e-26 122.9 188 39.4
arahy.Tifrunner.gnm1.ann1.AAJ54F Arachis hypogaea HOM05D004036 ORTHO05D004576 4.7e-26 122.1 194 41.8
MSTRG.1647 Avicennia marina HOM05D004036 ORTHO05D004576 6.1e-26 121.7 198 41.9
Gohir.A11G185400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.0e-25 120.9 188 38.8
VMungo0647G1622 Vigna mungo HOM05D004036 ORTHO05D004576 1.0e-25 120.9 194 41.2
CiPaw.08G015700 Carya illinoinensis HOM05D004036 ORTHO05D004576 1.8e-25 120.2 187 42.8
Gohir.D09G023175 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.8e-25 120.2 188 38.8
Gohir.A12G241700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.0e-25 119.4 188 38.8
Phvul.001G055700 Phaseolus vulgaris HOM05D004036 ORTHO05D004576 3.0e-25 119.4 194 39.7
TAR626G0352 Trochodendron aralioides HOM05D004036 ORTHO05D004576 3.0e-25 119.4 202 36.6
Eucgr.C01818 Eucalyptus grandis HOM05D004036 ORTHO05D004576 5.2e-25 118.6 195 40.5
Glyma.14G129200 Glycine max HOM05D004036 ORTHO05D004576 5.2e-25 118.6 190 41.6
arahy.Tifrunner.gnm1.ann1.7NC9IZ Arachis hypogaea HOM05D004036 ORTHO05D004576 6.7e-25 118.2 187 42.2
Gohir.D01G158400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 6.7e-25 118.2 187 39.6
CANSAT56G2568 Cannabis sativa HOM05D004036 ORTHO05D004576 8.8e-25 117.9 194 40.2
Dinv35883 Davidia involucrata HOM05D004036 ORTHO05D004576 8.8e-25 117.9 178 43.3
CSS0014753 Camellia sinensis var. sinensis HOM05D004036 ORTHO05D004576 1.1e-24 117.5 150 43.3
Gorai.004G151900 Gossypium raimondii HOM05D004036 ORTHO05D004576 2.6e-24 116.3 189 38.1
Haze_21623 Corylus avellana HOM05D004036 ORTHO05D004576 3.3e-24 115.9 231 35.1
Glyma.17G203900 Glycine max HOM05D004036 ORTHO05D004576 4.4e-24 115.5 189 39.7
Gorai.008G052900 Gossypium raimondii HOM05D004036 ORTHO05D004576 5.7e-24 115.2 187 39.0
TWI34G1922 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 4.8e-23 112.1 175 39.4
Gohir.D05G011350 Gossypium hirsutum HOM05D004036 ORTHO05D004576 7.0e-22 108.2 186 37.1
Sed0023915 Sechium edule HOM05D004036 ORTHO05D004576 9.1e-22 107.8 181 39.2
Carub.0006s2340 Capsella rubella HOM05D004036 ORTHO05D004576 2.6e-21 106.3 190 40.0
SGA_v2.0_scaffold169G38632 Striga asiatica HOM05D004036 ORTHO05D004576 3.5e-21 105.9 192 40.1
Aa31LG3G15750 Aethionema arabicum HOM05D004036 ORTHO05D004576 7.7e-21 104.8 195 37.4
Oeu031563.3 Olea europaea HOM05D004036 ORTHO05D004576 1.0e-20 104.4 152 41.4
Psat6g031000 Pisum sativum HOM05D004036 ORTHO05D004576 1.0e-20 104.4 183 41.0
CiPaw.03G235800 Carya illinoinensis HOM05D004036 ORTHO05D004576 1.3e-20 104.0 205 37.6
PGR031G0366 Punica granatum HOM05D004036 ORTHO05D004576 1.7e-20 103.6 191 36.1
MBI01_g10034_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 2.2e-20 103.2 212 39.2
Thhalv10004997m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 2.9e-20 102.8 174 40.2
ClCG05G017210 Citrullus lanatus HOM05D004036 ORTHO05D004576 3.8e-20 102.4 191 37.2
TPR.G20095 Trifolium pratense HOM05D004036 ORTHO05D004576 5.0e-20 102.1 190 39.5
Aqoxy7G01846 Aquilegia oxysepala HOM05D004036 ORTHO05D004576 6.5e-20 101.7 184 38.0
AT5G25540 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 6.5e-20 101.7 195 36.4
Gorai.010G053700 Gossypium raimondii HOM05D004036 ORTHO05D004576 6.5e-20 101.7 148 40.5
Cpa.g.sc91.6 Carica papaya HOM05D004036 ORTHO05D004576 1.1e-19 100.9 179 38.0
Medtr1g011280 Medicago truncatula HOM05D004036 ORTHO05D004576 3.2e-19 99.4 181 36.5
CARHR187840 Cardamine hirsuta HOM05D004036 ORTHO05D004576 5.5e-19 98.6 157 38.9
BolC7t44757H Brassica oleracea HOM05D004036 ORTHO05D004576 7.2e-19 98.2 183 36.1
THA.LOC104799217 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 9.4e-19 97.8 189 36.0
Sc23g0007020 Simmondsia chinensis HOM05D004036 ORTHO05D004576 1.2e-18 97.4 138 40.6
AL6G37340 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 2.1e-18 96.7 189 34.9
CsaV3_3G046690 Cucumis sativus L. HOM05D004036 ORTHO05D004576 2.1e-18 96.7 192 35.4
C07p42280 Brassica napus HOM05D004036 ORTHO05D004576 4.7e-18 95.5 186 35.5
Lj5g0012132 Lotus japonicus HOM05D004036 ORTHO05D004576 4.7e-18 95.5 187 35.3
Sp2g22000 Schrenkiella parvula HOM05D004036 ORTHO05D004576 6.1e-18 95.1 181 37.0
MD08G1136600 Malus domestica HOM05D004036 ORTHO05D004576 1.4e-17 94.0 86 60.5
A06p36250 Brassica napus HOM05D004036 ORTHO05D004576 1.8e-17 93.6 186 35.5
BraA06t26547Z Brassica rapa HOM05D004036 ORTHO05D004576 1.8e-17 93.6 186 35.5
Lalb_Chr08g0243781 Lupinus albus HOM05D004036 ORTHO05D004576 3.0e-17 92.8 179 36.9
Actinidia14638 Actinidia chinensis HOM05D004036 ORTHO05D004576 4.0e-17 92.4 120 47.5
CARHR201790 Cardamine hirsuta HOM05D004036 ORTHO05D004576 4.0e-17 92.4 195 34.4
DCAR_007682 Daucus carota HOM05D004036 ORTHO05D004576 4.0e-17 92.4 145 41.4
QL02p086217 Quercus lobata HOM05D004036 ORTHO05D004576 5.2e-17 92.0 198 34.8
HanXRQChr03g0077811 Helianthus annuus HOM05D004036 ORTHO05D004576 6.7e-17 91.7 97 56.7
EL10Ac2g02537 Beta vulgaris HOM05D004036 ORTHO05D004576 1.2e-16 90.9 187 41.2
Lalb_Chr23g0269031 Lupinus albus HOM05D004036 ORTHO05D004576 1.2e-16 90.9 190 35.3
Oeu019418.1 Olea europaea HOM05D004036 ORTHO05D004576 1.2e-16 90.9 152 42.1
AUR62024838 Chenopodium quinoa HOM05D004036 ORTHO05D004576 1.5e-16 90.5 184 37.5
Aa31LG11G4630 Aethionema arabicum HOM05D004036 ORTHO05D004576 2.0e-16 90.1 164 35.4
AUR62032381 Chenopodium quinoa HOM05D004036 ORTHO05D004576 3.3e-16 89.4 184 37.0
Hund25658 Selenicereus undatus HOM05D004036 ORTHO05D004576 3.3e-16 89.4 187 36.9
Gohir.A07G032200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 9.7e-16 87.8 136 36.8
Gohir.A08G237500 Gossypium hirsutum HOM05D004036 ORTHO05D004576 9.7e-16 87.8 136 36.8
AL6G22100 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 4.8e-15 85.5 190 34.2
GSVIVG01015440001 Vitis vinifera HOM05D004036 ORTHO05D004576 6.3e-15 85.1 92 56.5
Ah.12g063370 Amaranthus hybridus HOM05D004036 ORTHO05D004576 1.1e-14 84.3 170 39.4
BolC2t12008H Brassica oleracea HOM05D004036 ORTHO05D004576 1.4e-14 84.0 190 35.3
Carub.0006s0989 Capsella rubella HOM05D004036 ORTHO05D004576 1.8e-14 83.6 170 36.5
Sp6g32160 Schrenkiella parvula HOM05D004036 ORTHO05D004576 1.8e-14 83.6 183 33.9
AT5G11440 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 3.1e-14 82.8 184 32.1
BcaB07g29991 Brassica carinata HOM05D004036 ORTHO05D004576 3.1e-14 82.8 176 36.4
BcaC04g19226 Brassica carinata HOM05D004036 ORTHO05D004576 3.1e-14 82.8 184 34.2
C09p65420 Brassica napus HOM05D004036 ORTHO05D004576 3.1e-14 82.8 191 34.6
BolC9t59367H Brassica oleracea HOM05D004036 ORTHO05D004576 3.1e-14 82.8 191 34.6
Thhalv10014836m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 5.3e-14 82.0 193 33.2
MELO3C003669.2 Cucumis melo HOM05D004036 ORTHO05D004576 7.0e-14 81.6 150 34.7
BcaC03g13367 Brassica carinata HOM05D004036 ORTHO05D004576 1.6e-13 80.5 77 50.6
PSO063G5334 Papaver somniferum HOM05D004036 ORTHO05D004576 2.0e-13 80.1 188 36.2
PSO782G2888 Papaver somniferum HOM05D004036 ORTHO05D004576 2.0e-13 80.1 182 36.8
A02p01010 Brassica napus HOM05D004036 ORTHO05D004576 2.7e-13 79.7 165 33.3
BraA02t05082Z Brassica rapa HOM05D004036 ORTHO05D004576 2.7e-13 79.7 165 33.3
Nn2g11835 Nelumbo nucifera HOM05D004036 ORTHO05D004576 2.7e-13 79.7 152 37.5
C02p05040 Brassica napus HOM05D004036 ORTHO05D004576 3.5e-13 79.3 171 33.9
MBI04_g26645_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 4.5e-13 79.0 218 34.4
BcaNung07259 Brassica carinata HOM05D000175 ORTHO05D000481 5.9e-13 78.6 171 36.8
A10p26310 Brassica napus HOM05D004036 ORTHO05D004576 2.2e-12 76.6 186 33.3
THA.LOC104815044 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 2.2e-12 76.6 185 36.2
BcaB01g06306 Brassica carinata HOM05D004036 ORTHO05D004576 5.0e-12 75.5 182 33.5
BcaB08g37059 Brassica carinata HOM05D004036 ORTHO05D004576 4.2e-11 72.4 85 48.2
C02p59450 Brassica napus HOM05D004036 ORTHO05D004576 5.5e-11 72.0 166 34.9
Nn8g39276 Nelumbo nucifera HOM05D004036 ORTHO05D004576 5.5e-11 72.0 149 34.2
BcaNung01927 Brassica carinata HOM05D004036 ORTHO05D004576 9.4e-11 71.2 89 43.8
BcaB04g19786 Brassica carinata HOM05D004036 ORTHO05D004576 1.2e-10 70.9 153 32.0
BraA10t44688Z Brassica rapa HOM05D004036 ORTHO05D004576 2.7e-10 69.7 190 30.5
A02p39670 Brassica napus HOM05D004036 ORTHO05D004576 4.7e-10 68.9 181 30.4
BraA02t08932Z Brassica rapa HOM05D004036 ORTHO05D004576 4.7e-10 68.9 181 30.4
A03p05000 Brassica napus HOM05D004036 ORTHO05D004576 6.1e-10 68.6 83 45.8
C09p06800 Brassica napus HOM05D004036 ORTHO05D004576 8.0e-10 68.2 86 39.5
BolC9t53601H Brassica oleracea HOM05D004036 ORTHO05D004576 8.0e-10 68.2 86 39.5
TAR383G0233 Trochodendron aralioides HOM05D004036 ORTHO05D004576 6.8e-09 65.1 146 32.9
Gohir.D04G088301 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.0e-08 63.5 50 54.0
Gohir.D12G143101 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.0e-08 63.5 50 54.0
BcaB01g05484 Brassica carinata HOM05D004036 ORTHO05D004576 7.5e-08 61.6 88 37.5
C03p05740 Brassica napus HOM05D004036 ORTHO05D004576 7.5e-08 61.6 88 37.5
BolC3t13087H Brassica oleracea HOM05D004036 ORTHO05D004576 7.5e-08 61.6 88 37.5
BolC7t40715H Brassica oleracea HOM05D004036 ORTHO05D004576 1.3e-07 60.8 135 31.1
Actinidia15710 Actinidia chinensis HOM05D004036 ORTHO05D004576 2.8e-07 59.7 90 34.4
Sed0025074 Sechium edule HOM05D004036 ORTHO05D004576 4.8e-07 58.9 156 33.3
C07p03200 Brassica napus HOM05D004036 ORTHO05D004576 6.3e-07 58.5 135 32.6
BcaC09g50856 Brassica carinata HOM05D004036 ORTHO05D004576 1.1e-06 57.8 134 32.1
C01p19860 Brassica napus HOM05D004036 ORTHO05D004576 1.1e-06 57.8 135 31.9
BolC1t01914H Brassica oleracea HOM05D004036 ORTHO05D004576 1.1e-06 57.8 135 31.9
Glyma.06G073400 Glycine max HOM05D004036 ORTHO05D004576 3.1e-06 56.2 95 36.8
Phvul.009G097900 Phaseolus vulgaris HOM05D004036 ORTHO05D050263 3.1e-06 56.2 79 39.2
Sed0023203 Sechium edule HOM05D004036 ORTHO05D004576 3.1e-06 56.2 69 49.3
A04p20320 Brassica napus HOM05D000001 ORTHO05D004044 5.4e-06 55.5 199 29.1
Potri.018G047700 Populus trichocarpa HOM05D000001 ORTHO05D004044 5.4e-06 55.5 67 41.8
Prupe.7G234300 Prunus persica HOM05D004036 ORTHO05D004576 5.4e-06 55.5 171 25.1
PGR142G0487 Punica granatum HOM05D000001 ORTHO05D004044 5.4e-06 55.5 82 35.4
BraA04t17611Z Brassica rapa HOM05D000001 ORTHO05D004044 7.0e-06 55.1 199 28.1
Lalb_Chr24g0393701 Lupinus albus HOM05D000001 ORTHO05D004044 7.0e-06 55.1 56 48.2
Sabra06G0168800 Salix brachista HOM05D000001 ORTHO05D004044 7.0e-06 55.1 63 44.4
Gohir.D13G195200 Gossypium hirsutum HOM05D000001 ORTHO05D004044 9.1e-06 54.7 67 40.3
Gorai.013G221300 Gossypium raimondii HOM05D000001 ORTHO05D004044 9.1e-06 54.7 67 40.3


User provided reference genes

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