Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g067630.3 Solanum lycopersicum HOM05D007454 ORTHO05D009382 1.7e-84 315.8 152 100.0
PGSC0003DMG400002261 Solanum tuberosum HOM05D007454 ORTHO05D009382 2.5e-70 268.9 155 87.7
Nitab4.5_0000125g0360 Nicotiana tabacum HOM05D007454 ORTHO05D009382 2.9e-63 245.4 152 82.2
Nitab4.5_0003201g0010 Nicotiana tabacum HOM05D007454 ORTHO05D009382 4.2e-62 241.5 152 80.3
CAN.G506.13 Capsicum annuum HOM05D007454 ORTHO05D009382 5.7e-59 231.1 152 78.3
Sopen08g021580 Solanum pennellii HOM05D007454 ORTHO05D009382 6.7e-52 207.6 102 98.0
Rhsim02G0189300 Rhododendron simsii HOM05D007454 ORTHO05D009382 3.2e-30 135.6 155 52.3
Manes.16G117700 Manihot esculenta HOM05D007454 ORTHO05D009382 2.7e-29 132.5 158 46.8
CSS0001844 Camellia sinensis var. sinensis HOM05D007454 ORTHO05D009382 4.7e-29 131.7 156 47.4
Manes.03G018900 Manihot esculenta HOM05D007454 ORTHO05D009382 8.0e-29 131.0 158 48.1
Actinidia13275 Actinidia chinensis HOM05D007454 ORTHO05D009382 1.8e-28 129.8 154 50.0
Actinidia29311 Actinidia chinensis HOM05D007454 ORTHO05D009382 1.8e-28 129.8 155 49.0
Cc11_g01380 Coffea canephora HOM05D007454 ORTHO05D009382 1.2e-27 127.1 161 46.0
RcHm_v2.0_Chr6g0298931 Rosa chinensis HOM05D007454 ORTHO05D009382 1.5e-27 126.7 154 47.4
QL12p031592 Quercus lobata HOM05D007454 ORTHO05D009382 2.0e-27 126.3 157 48.4
FAN15G1931 Fragaria x ananassa HOM05D007454 ORTHO05D009382 4.4e-27 125.2 150 46.7
Thecc.09G146500 Theobroma cacao HOM05D007454 ORTHO05D009382 7.5e-27 124.4 152 46.1
FAN20G1122 Fragaria x ananassa HOM05D007454 ORTHO05D009382 9.8e-27 124.0 151 47.0
Cfa013203 Carpinus fangiana HOM05D007454 ORTHO05D009382 1.3e-26 123.6 150 44.7
Haze_21608 Corylus avellana HOM05D007454 ORTHO05D009382 1.3e-26 123.6 153 43.8
FAN24G1693 Fragaria x ananassa HOM05D007454 ORTHO05D009382 1.3e-26 123.6 151 47.7
FvH4_2g29860 Fragaria vesca HOM05D007454 ORTHO05D009382 1.7e-26 123.2 151 47.0
Gorai.007G350400 Gossypium raimondii HOM05D007454 ORTHO05D009382 2.8e-26 122.5 152 44.1
Gohir.D11G320200 Gossypium hirsutum HOM05D007454 ORTHO05D009382 8.3e-26 120.9 152 44.7
Gohir.A11G304800 Gossypium hirsutum HOM05D007454 ORTHO05D009382 1.8e-25 119.8 152 44.1
Potri.006G248300 Populus trichocarpa HOM05D007454 ORTHO05D009382 1.8e-25 119.8 156 47.4
COL.COLO4_24027 Corchorus olitorius HOM05D007454 ORTHO05D009382 3.1e-25 119.0 152 44.7
FAN27G1093 Fragaria x ananassa HOM05D007454 ORTHO05D009382 3.1e-25 119.0 151 45.7
TAR383G0100 Trochodendron aralioides HOM05D007454 ORTHO05D009382 1.2e-24 117.1 153 45.1
Sabra06G0194300 Salix brachista HOM05D007454 ORTHO05D009382 1.6e-24 116.7 158 46.2
TAR626G1515 Trochodendron aralioides HOM05D007454 ORTHO05D009382 1.6e-24 116.7 153 44.4
Migut.A00288 Erythranthe guttata HOM05D007454 ORTHO05D009382 2.0e-24 116.3 148 43.9
Atru.chr7.2345 Acer truncatum HOM05D007454 ORTHO05D009382 7.7e-24 114.4 160 46.9
Prupe.1G471000 Prunus persica HOM05D007454 ORTHO05D009382 7.7e-24 114.4 157 48.4
Lsat_1_v5_gn_1_45380 Lactuca sativa HOM05D007454 ORTHO05D009382 2.2e-23 112.8 154 42.2
CiPaw.08G014500 Carya illinoinensis HOM05D007454 ORTHO05D009382 3.8e-23 112.1 165 43.0
Oeu032495.1 Olea europaea HOM05D007454 ORTHO05D009382 6.5e-23 111.3 155 45.2
TWI34G0809 Tripterygium wilfordii HOM05D007454 ORTHO05D009382 1.1e-22 110.5 157 42.7
Ciclev10009811m.g Citrus clementina HOM05D007454 ORTHO05D009382 1.9e-22 109.8 159 42.1
MD08G1140700 Malus domestica HOM05D007454 ORTHO05D009382 3.2e-22 109.0 151 43.0
MD15G1117600 Malus domestica HOM05D007454 ORTHO05D009382 3.2e-22 109.0 152 42.8
Duzib150G0674 Durio zibethinus HOM05D007454 ORTHO05D009382 4.2e-22 108.6 114 45.6
DCAR_001472 Daucus carota HOM05D007454 ORTHO05D009382 1.2e-21 107.1 150 42.7
Nn2g11862 Nelumbo nucifera HOM05D007454 ORTHO05D009382 1.6e-21 106.7 168 41.7
EL10Ac2g02557 Beta vulgaris HOM05D007454 ORTHO05D009382 2.8e-21 105.9 164 37.8
Dinv11595 Davidia involucrata HOM05D007454 ORTHO05D009382 2.8e-21 105.9 116 49.1
Cpa.g.sc603.1 Carica papaya HOM05D007454 ORTHO05D009382 5.2e-20 101.7 137 42.3
CiPaw.07G219000 Carya illinoinensis HOM05D007454 ORTHO05D009382 8.8e-20 100.9 165 41.8
HanXRQChr01g0030031 Helianthus annuus HOM05D007454 ORTHO05D009382 1.2e-19 100.5 155 38.1
Glyma.06G072000 Glycine max HOM05D007454 ORTHO05D009382 1.5e-19 100.1 142 45.8
Glyma.04G070000 Glycine max HOM05D007454 ORTHO05D009382 2.6e-19 99.4 143 42.7
ECA248G0251 Erigeron canadensis HOM05D007454 ORTHO05D009382 7.5e-19 97.8 157 40.1
unitig_748.g8205 Utricularia gibba HOM05D007454 ORTHO05D009382 3.7e-18 95.5 133 36.8
Phvul.009G096400 Phaseolus vulgaris HOM05D007454 ORTHO05D009382 9.2e-17 90.9 141 39.7
Sed0003243 Sechium edule HOM05D007454 ORTHO05D009382 9.2e-17 90.9 165 37.6
Sc09g0008740 Simmondsia chinensis HOM05D007454 ORTHO05D009382 9.2e-17 90.9 159 35.8
Lalb_Chr23g0268861 Lupinus albus HOM05D007454 ORTHO05D009382 1.2e-16 90.5 165 39.4
Aqoxy7G01923 Aquilegia oxysepala HOM05D007454 ORTHO05D009382 2.7e-16 89.4 154 37.0
Lj1g0018180 Lotus japonicus HOM05D007454 ORTHO05D009382 4.5e-16 88.6 160 36.9
Sed0012550 Sechium edule HOM05D007454 ORTHO05D009382 7.8e-16 87.8 158 35.4
VMungo1309G0733 Vigna mungo HOM05D007454 ORTHO05D009382 7.8e-16 87.8 117 45.3
ClCG08G012990 Citrullus lanatus HOM05D007454 ORTHO05D009382 1.3e-15 87.0 162 38.3
PSO170G5517 Papaver somniferum HOM05D007454 ORTHO05D009382 1.3e-15 87.0 129 42.6
Hund25693 Selenicereus undatus HOM05D007454 ORTHO05D009382 2.3e-15 86.3 164 37.8
THA.LOC104803822 Tarenaya hassleriana HOM05D007454 ORTHO05D009382 2.3e-15 86.3 160 38.8
Medtr3g107890 Medicago truncatula HOM05D007454 ORTHO05D009382 2.9e-15 85.9 168 38.7
SalBow4G3079 Salvia bowleyana HOM05D007454 ORTHO05D009382 2.9e-15 85.9 79 54.4
arahy.Tifrunner.gnm1.ann1.X4UCF1 Arachis hypogaea HOM05D007454 ORTHO05D009382 5.0e-15 85.1 163 39.9
arahy.Tifrunner.gnm1.ann1.AC8RV3 Arachis hypogaea HOM05D007454 ORTHO05D009382 1.1e-14 84.0 162 40.1
PSO017G6963 Papaver somniferum HOM05D007454 ORTHO05D009382 3.3e-14 82.4 164 36.6
Sp4g05200 Schrenkiella parvula HOM05D007454 ORTHO05D009382 3.3e-14 82.4 159 40.3
AL4G17110 Arabidopsis lyrata HOM05D007454 ORTHO05D009382 4.3e-14 82.0 162 39.5
CsaV3_3G046620 Cucumis sativus L. HOM05D007454 ORTHO05D009382 4.3e-14 82.0 129 35.7
CsaV3_2G031720 Cucumis sativus L. HOM05D007454 ORTHO05D009382 9.5e-14 80.9 153 36.6
Carub.0004s0541 Capsella rubella HOM05D007454 ORTHO05D009382 1.6e-13 80.1 158 38.0
Eucgr.C01807 Eucalyptus grandis HOM05D007454 ORTHO05D009382 1.6e-13 80.1 158 37.3
ClCG05G017140 Citrullus lanatus HOM05D007454 ORTHO05D009382 2.8e-13 79.3 148 35.1
Ca_15708_v3 Cicer arietinum L. HOM05D007454 ORTHO05D009382 3.6e-13 79.0 149 39.6
MELO3C003676.2 Cucumis melo HOM05D007454 ORTHO05D009382 3.6e-13 79.0 152 34.9
AT2G25625 Arabidopsis thaliana HOM05D007454 ORTHO05D009382 8.0e-13 77.8 161 39.8
CARHR115660 Cardamine hirsuta HOM05D007454 ORTHO05D009382 1.0e-12 77.4 160 36.9
TPR.G27330 Trifolium pratense HOM05D007454 ORTHO05D009382 1.4e-12 77.0 176 33.0
MELO3C011223.2 Cucumis melo HOM05D007454 ORTHO05D009382 2.3e-12 76.3 112 40.2
Thhalv10000347m.g Eutrema salsugineum HOM05D007454 ORTHO05D009382 2.3e-12 76.3 152 38.2
CDE07G1568 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 1.5e-11 73.6 128 36.7
Sed0011711 Sechium edule HOM05D007454 ORTHO05D009382 3.4e-11 72.4 138 34.8
BraA04t17571Z Brassica rapa HOM05D007454 ORTHO05D009382 4.4e-11 72.0 160 40.0
A04p19830 Brassica napus HOM05D007454 ORTHO05D009382 5.7e-11 71.6 161 39.8
TPR.G34694 Trifolium pratense HOM05D007454 ORTHO05D009382 5.7e-11 71.6 157 33.1
BcaC02g08336 Brassica carinata HOM05D007454 ORTHO05D009382 9.8e-11 70.9 161 39.8
C04p55570 Brassica napus HOM05D007454 ORTHO05D009382 9.8e-11 70.9 161 39.8
BolC4t27081H Brassica oleracea HOM05D007454 ORTHO05D009382 9.8e-11 70.9 161 39.8
BcaB06g28081 Brassica carinata HOM05D007454 ORTHO05D009382 4.9e-10 68.6 160 37.5
Zm00001eb296620 Zea mays HOM05D007454 ORTHO05D009382 1.4e-09 67.0 114 34.2
CDE06G2386 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 1.8e-09 66.6 126 36.5
Psat5g027000 Pisum sativum HOM05D007454 ORTHO05D009382 9.2e-09 64.3 68 52.9
MBI01_g03566_MAGBIO Magnolia biondii HOM05D007454 ORTHO05D009382 2.7e-08 62.8 153 30.1
ATR0083G010 Amborella trichopoda HOM05D007454 ORTHO05D009382 5.9e-08 61.6 151 32.5
ATR0260G001 Amborella trichopoda HOM05D007454 ORTHO05D009382 7.8e-08 61.2 120 32.5
Os05g0575000 Oryza sativa ssp. japonica HOM05D007454 ORTHO05D009382 1.0e-07 60.8 36 63.9
Aa31LG1G8530 Aethionema arabicum HOM05D007454 ORTHO05D009382 1.1e-06 57.4 168 31.0
CDE06G2168 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 1.5e-06 57.0 36 61.1


User provided reference genes

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