Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g067270.3 Solanum lycopersicum HOM05D005213 ORTHO05D006229 9.1e-121 436.8 203 100.0
CAN.G1059.3 Capsicum annuum HOM05D005213 ORTHO05D006229 5.6e-86 321.2 210 74.8
Nitab4.5_0000508g0090 Nicotiana tabacum HOM05D005213 ORTHO05D006229 3.2e-81 305.4 198 78.3
Peaxi162Scf00922g00016 Petunia axillaris HOM05D005213 ORTHO05D006229 1.7e-79 299.7 221 71.9
Nitab4.5_0007212g0010 Nicotiana tabacum HOM05D005213 ORTHO05D006229 4.4e-75 285.0 197 74.1
Sopen08g021200 Solanum pennellii HOM05D005213 ORTHO05D006229 3.2e-65 252.3 114 99.1
Ciclev10008490m.g Citrus clementina HOM05D005213 ORTHO05D006229 2.4e-57 226.1 228 55.3
Potri.006G217900 Populus trichocarpa HOM05D005213 ORTHO05D006229 1.7e-55 219.9 230 53.5
TAR624G0676 Trochodendron aralioides HOM05D005213 ORTHO05D006229 1.5e-54 216.9 227 57.7
TWI34G0479 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 7.3e-54 214.5 223 53.4
Duzib150G1003 Durio zibethinus HOM05D005213 ORTHO05D006229 1.1e-52 210.7 226 54.0
Cc08_g07800 Coffea canephora HOM05D005213 ORTHO05D006229 3.1e-52 209.1 229 52.4
GSVIVG01035506001 Vitis vinifera HOM05D005213 ORTHO05D006229 3.1e-52 209.1 199 57.3
Gorai.009G039700 Gossypium raimondii HOM05D005213 ORTHO05D006229 1.5e-51 206.8 232 51.7
Cpa.g.sc82.19 Carica papaya HOM05D005213 ORTHO05D006229 2.6e-51 206.1 226 54.4
Duzib187G1454 Durio zibethinus HOM05D005213 ORTHO05D006229 3.4e-51 205.7 228 53.5
CiPaw.16G068600 Carya illinoinensis HOM05D005213 ORTHO05D006229 4.4e-51 205.3 217 52.5
Thecc.09G066400 Theobroma cacao HOM05D005213 ORTHO05D006229 4.4e-51 205.3 213 54.5
Duzib168G1397 Durio zibethinus HOM05D005213 ORTHO05D006229 1.3e-50 203.8 214 55.6
Gohir.D05G039200 Gossypium hirsutum HOM05D005213 ORTHO05D006229 1.3e-50 203.8 213 52.6
Oeu022129.1 Olea europaea HOM05D005213 ORTHO05D006229 6.4e-50 201.4 224 52.2
Manes.16G087800 Manihot esculenta HOM05D005213 ORTHO05D006229 1.4e-49 200.3 197 56.9
Migut.A00332 Erythranthe guttata HOM05D005213 ORTHO05D006229 1.9e-49 199.9 228 50.0
Prupe.1G401300 Prunus persica HOM05D005213 ORTHO05D006229 7.1e-49 198.0 233 49.4
COL.COLO4_21169 Corchorus olitorius HOM05D005213 ORTHO05D006229 1.0e-47 194.1 232 48.3
MBI19_g18107_MAGBIO Magnolia biondii HOM05D004195 ORTHO05D005309 1.5e-46 190.3 224 50.4
Nn8g38551 Nelumbo nucifera HOM05D005213 ORTHO05D006229 3.3e-46 189.1 227 48.5
Cfa023359 Carpinus fangiana HOM05D005213 ORTHO05D006229 1.3e-45 187.2 237 50.6
Oeu020105.1 Olea europaea HOM05D005213 ORTHO05D006229 4.8e-45 185.3 175 58.9
Haze_13552 Corylus avellana HOM05D005213 ORTHO05D006229 5.8e-43 178.3 235 46.8
Aqoxy7G04081 Aquilegia oxysepala HOM05D005213 ORTHO05D006229 7.6e-43 177.9 230 46.5
MSTRG.11768 Avicennia marina HOM05D005213 ORTHO05D006229 9.9e-43 177.6 211 47.4
MD15G1047100 Malus domestica HOM05D005213 ORTHO05D006229 2.2e-42 176.4 218 47.2
TWI32G0481 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 2.2e-42 176.4 179 53.1
MD08G1046900 Malus domestica HOM05D005213 ORTHO05D006229 2.9e-42 176.0 218 47.2
Hund02523 Selenicereus undatus HOM05D005213 ORTHO05D006229 1.1e-41 174.1 231 45.9
Manes.03G055700 Manihot esculenta HOM05D005213 ORTHO05D006229 1.4e-41 173.7 196 51.0
Dinv41845 Davidia involucrata HOM05D005213 ORTHO05D006229 4.2e-41 172.2 252 44.8
Eucgr.C00749 Eucalyptus grandis HOM05D005213 ORTHO05D006229 5.5e-41 171.8 227 44.5
Gohir.D06G080700 Gossypium hirsutum HOM05D005213 ORTHO05D006229 6.0e-40 168.3 215 50.2
Medtr3g105580 Medicago truncatula HOM05D005213 ORTHO05D006229 6.0e-40 168.3 199 47.7
Gorai.010G094100 Gossypium raimondii HOM05D005213 ORTHO05D006229 7.9e-40 167.9 215 50.2
SGA_v2.0_scaffold22G09922 Striga asiatica HOM05D005213 ORTHO05D006229 1.0e-39 167.5 214 44.9
Lalb_Chr11g0063421 Lupinus albus HOM05D005213 ORTHO05D006229 1.3e-39 167.2 228 43.4
Gohir.A05G037666 Gossypium hirsutum HOM05D005213 ORTHO05D006229 2.3e-39 166.4 162 53.1
TPR.G21422 Trifolium pratense HOM05D005213 ORTHO05D006229 3.0e-39 166.0 210 46.2
EL10Ac5g11257 Beta vulgaris HOM05D005213 ORTHO05D006229 3.3e-38 162.5 205 45.4
Lj1g0011388 Lotus japonicus HOM05D005213 ORTHO05D006229 4.3e-38 162.2 202 46.5
Nn6g35650 Nelumbo nucifera HOM05D005213 ORTHO05D006229 5.6e-38 161.8 205 45.9
Glyma.04G057900 Glycine max HOM05D005213 ORTHO05D006229 7.4e-38 161.4 206 45.1
HanXRQChr08g0228011 Helianthus annuus HOM05D005213 ORTHO05D006229 2.1e-37 159.8 190 51.1
Ca_15799_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 1.1e-36 157.5 214 45.3
RcHm_v2.0_Chr6g0304741 Rosa chinensis HOM05D005213 ORTHO05D006229 1.4e-36 157.1 210 45.2
FvH4_2g37040 Fragaria vesca HOM05D005213 ORTHO05D006229 6.9e-36 154.8 220 45.0
Gohir.A06G081000 Gossypium hirsutum HOM05D005213 ORTHO05D006229 6.9e-36 154.8 214 47.7
FAN27G3126 Fragaria x ananassa HOM05D005213 ORTHO05D006229 9.0e-36 154.5 219 44.7
Glyma.06G058600 Glycine max HOM05D005213 ORTHO05D006229 1.2e-35 154.1 203 42.4
PSO386G0069 Papaver somniferum HOM05D005213 ORTHO05D006229 2.6e-35 152.9 234 43.6
FAN20G0215 Fragaria x ananassa HOM05D005213 ORTHO05D006229 3.4e-35 152.5 221 43.4
PSO223G0037 Papaver somniferum HOM05D005213 ORTHO05D006229 3.4e-35 152.5 235 43.4
Psat5g033280 Pisum sativum HOM05D005213 ORTHO05D006229 1.0e-34 151.0 215 42.3
DCAR_001248 Daucus carota HOM05D005213 ORTHO05D006229 3.8e-34 149.1 231 43.3
FAN15G1397 Fragaria x ananassa HOM05D005213 ORTHO05D006229 8.4e-34 147.9 223 42.6
Lj7P206T8 Lonicera japonica HOM05D005213 ORTHO05D006229 1.1e-33 147.5 188 47.9
PGR142G1942 Punica granatum HOM05D005213 ORTHO05D006229 3.2e-33 146.0 222 42.8
Phvul.009G084600 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 1.2e-32 144.1 203 43.8
VMungo1309G2063 Vigna mungo HOM05D005213 ORTHO05D006229 6.7e-31 138.3 187 44.4
HanXRQChr03g0067421 Helianthus annuus HOM05D005213 ORTHO05D006229 8.7e-31 137.9 187 45.5
Rhsim04G0156600 Rhododendron simsii HOM05D005213 ORTHO05D006229 8.7e-31 137.9 227 42.7
CSS0041342 Camellia sinensis var. sinensis HOM05D005213 ORTHO05D006229 1.1e-30 137.5 257 38.9
Actinidia26432 Actinidia chinensis HOM05D005213 ORTHO05D006229 1.9e-30 136.7 129 57.4
AUR62032196 Chenopodium quinoa HOM05D005213 ORTHO05D006229 3.3e-30 136.0 167 47.9
Oeu030214.1 Olea europaea HOM05D005213 ORTHO05D006229 2.1e-29 133.3 161 48.4
THA.LOC104810950 Tarenaya hassleriana HOM05D005213 ORTHO05D006229 8.2e-29 131.3 189 40.7
CANSAT25G2504 Cannabis sativa HOM05D005213 ORTHO05D006229 1.1e-28 131.0 120 55.8
CDE05G3316 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 2.0e-27 126.7 204 36.3
HanXRQChr10g0309951 Helianthus annuus HOM05D005213 ORTHO05D006229 1.1e-25 120.9 223 37.2
TPR.G38861 Trifolium pratense HOM05D005213 ORTHO05D006229 1.1e-25 120.9 225 39.1
ECA234G4818 Erigeron canadensis HOM05D005213 ORTHO05D006229 1.4e-25 120.6 186 40.9
ECA240G0440 Erigeron canadensis HOM05D005213 ORTHO05D006229 1.2e-24 117.5 194 38.7
AUR62036963 Chenopodium quinoa HOM05D005213 ORTHO05D006229 1.0e-23 114.4 125 48.0
Lalb_Chr22g0349651 Lupinus albus HOM05D005213 ORTHO05D006229 1.0e-23 114.4 198 36.4
CsaV3_6G031800 Cucumis sativus L. HOM05D005213 ORTHO05D006229 3.9e-23 112.5 220 33.6
ATR0681G043 Amborella trichopoda HOM05D005213 ORTHO05D006229 4.3e-22 109.0 254 34.3
Medtr1g014750 Medicago truncatula HOM05D005213 ORTHO05D006229 7.4e-22 108.2 191 41.9
Sc10g0009530 Simmondsia chinensis HOM05D005213 ORTHO05D006229 7.4e-22 108.2 211 31.8
Lalb_Chr08g0244621 Lupinus albus HOM05D005213 ORTHO05D006229 1.3e-21 107.5 105 46.7
Hma1.2p1_0920F.1_g236590 Hydrangea macrophylla HOM05D005213 ORTHO05D006229 4.8e-21 105.5 192 39.6
vmacro08659 Vaccinium macrocarpon HOM05D005213 ORTHO05D006229 1.4e-20 104.0 222 38.3
Cfa017841 Carpinus fangiana HOM05D005213 ORTHO05D006229 1.8e-20 103.6 217 36.9
unitig_32.g10930 Utricularia gibba HOM05D005213 ORTHO05D006229 1.8e-20 103.6 169 35.5
Sed0001538 Sechium edule HOM05D005213 ORTHO05D006229 2.4e-20 103.2 185 36.8
Ca_13089_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 4.5e-19 99.0 220 35.9
Haze_18367 Corylus avellana HOM05D005213 ORTHO05D006229 4.5e-19 99.0 202 36.1
Zm00001eb019450 Zea mays HOM05D005213 ORTHO05D006229 3.8e-18 95.9 244 29.9
CDE05G3450 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 2.5e-17 93.2 226 34.1
ClCG08G009670 Citrullus lanatus HOM05D005213 ORTHO05D006229 2.1e-16 90.1 162 35.2
MELO3C026560.2 Cucumis melo HOM05D005213 ORTHO05D006229 3.6e-16 89.4 177 31.1
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 4.6e-16 89.0 158 38.0
BraA10t43954Z Brassica rapa HOM05D005213 ORTHO05D006229 5.1e-15 85.5 188 34.6
A10p18740 Brassica napus HOM05D005213 ORTHO05D006229 2.5e-14 83.2 188 34.0
Psat6g023400 Pisum sativum HOM05D005213 ORTHO05D006229 3.3e-14 82.8 85 49.4
SalBow8G0306 Salvia bowleyana HOM05D005213 ORTHO05D006229 9.7e-14 81.3 74 58.1
arahy.Tifrunner.gnm1.ann1.698XEU Arachis hypogaea HOM05D005213 ORTHO05D006229 2.2e-13 80.1 197 31.5
AT5G21280 Arabidopsis thaliana HOM05D005213 ORTHO05D006229 1.4e-12 77.4 194 36.1
Phvul.001G044200 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 1.8e-12 77.0 137 35.0
SEGI_40729 Sequoiadendron giganteum HOM05D005213 ORTHO05D006229 1.8e-12 77.0 52 61.5
BcaC03g13850 Brassica carinata HOM05D005213 ORTHO05D006229 4.1e-12 75.9 215 33.0
BolC2t07127H Brassica oleracea HOM05D005213 ORTHO05D006229 4.1e-12 75.9 215 33.0
BcaC04g19528 Brassica carinata HOM05D005213 ORTHO05D006229 6.9e-12 75.1 189 32.8
HPP92_013274 Vanilla planifolia HOM05D005213 ORTHO05D006229 6.9e-12 75.1 92 43.5
BcaB08g36461 Brassica carinata HOM05D005213 ORTHO05D006229 1.2e-11 74.3 203 32.5
C09p54690 Brassica napus HOM05D005213 ORTHO05D006229 1.2e-11 74.3 190 33.2
BolC9t58333H Brassica oleracea HOM05D005213 ORTHO05D006229 1.2e-11 74.3 190 33.2
arahy.Tifrunner.gnm1.ann1.3D63PE Arachis hypogaea HOM05D005213 ORTHO05D006229 2.6e-11 73.2 159 32.1
BNapus_Darmor_BZH_scaffold_38p00940 Brassica napus HOM05D005213 ORTHO05D006229 1.3e-10 70.9 212 32.1
BraA02t05631Z Brassica rapa HOM05D005213 ORTHO05D006229 1.3e-10 70.9 212 32.1
Phvul.001G044400 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 2.9e-10 69.7 252 26.6
BcaB05g22758 Brassica carinata HOM05D005213 ORTHO05D006229 6.5e-10 68.6 184 33.2
ECA236G4272 Erigeron canadensis HOM05D005213 ORTHO05D006229 8.5e-10 68.2 214 29.9
unitig_747.g21889 Utricularia gibba HOM05D005213 ORTHO05D006229 3.2e-09 66.2 173 30.1
BraA03t10361Z Brassica rapa HOM05D005213 ORTHO05D006229 1.2e-08 64.3 190 34.7
HPP92_004172 Vanilla planifolia HOM05D001722 ORTHO05D001910 4.7e-08 62.4 71 42.3
C03p12080 Brassica napus HOM05D005213 ORTHO05D006229 6.1e-08 62.0 192 30.7
Thhalv10014216m.g Eutrema salsugineum HOM05D005213 ORTHO05D006229 7.9e-08 61.6 192 30.2
CARHR191550 Cardamine hirsuta HOM05D005213 ORTHO05D006229 1.0e-07 61.2 186 32.3
BcaC01g06616 Brassica carinata HOM05D005213 ORTHO05D006229 1.8e-07 60.5 192 30.7
BolC3t13679H Brassica oleracea HOM05D005213 ORTHO05D006229 1.8e-07 60.5 192 30.7
VMungo0477G0001 Vigna mungo HOM05D005213 ORTHO05D006229 1.8e-07 60.5 79 35.4
SGA_v2.0_scaffold4G02181 Striga asiatica HOM05D005213 ORTHO05D006229 3.0e-07 59.7 216 32.4
Carub.0006s1962 Capsella rubella HOM05D005213 ORTHO05D006229 5.1e-07 58.9 188 31.4
AL6G32940 Arabidopsis lyrata HOM05D005213 ORTHO05D006229 5.7e-06 55.5 197 31.0
A03p10500 Brassica napus HOM05D005213 ORTHO05D006229 9.7e-06 54.7 202 30.2


User provided reference genes

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