Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g067240.4 Solanum lycopersicum HOM05D005024 ORTHO05D006396 8.0e-280 966.5 493 100.0
Nitab4.5_0004346g0050 Nicotiana tabacum HOM05D005024 ORTHO05D006396 7.6e-222 773.9 543 77.9
Sopen08g021170 Solanum pennellii HOM05D005024 ORTHO05D006396 5.7e-209 731.1 431 89.3
Nitab4.5_0000508g0040 Nicotiana tabacum HOM05D005024 ORTHO05D006396 7.4e-209 730.7 531 75.5
Peaxi162Scf00922g00210 Petunia axillaris HOM05D005024 ORTHO05D006396 3.2e-196 688.7 479 79.1
CSS0015942 Camellia sinensis var. sinensis HOM05D005024 ORTHO05D006396 1.7e-168 596.7 556 60.3
Cc08_g06760 Coffea canephora HOM05D005024 ORTHO05D006396 1.7e-165 586.6 558 59.7
MSTRG.11771 Avicennia marina HOM05D005024 ORTHO05D006396 8.6e-165 584.3 551 58.3
PGSC0003DMG400007379 Solanum tuberosum HOM05D005024 ORTHO05D006396 8.6e-165 584.3 361 86.1
Atru.chr7.1825 Acer truncatum HOM05D005024 ORTHO05D006396 3.6e-163 578.9 549 58.8
Ciclev10007934m.g Citrus clementina HOM05D005024 ORTHO05D006396 4.1e-159 565.5 553 58.4
Eucgr.C00744 Eucalyptus grandis HOM05D005024 ORTHO05D006396 1.3e-157 560.5 553 57.7
Manes.16G087100 Manihot esculenta HOM05D005024 ORTHO05D006396 2.9e-157 559.3 556 57.6
SalBow4G3344 Salvia bowleyana HOM05D005024 ORTHO05D006396 5.0e-157 558.5 586 54.6
Potri.006G218800 Populus trichocarpa HOM05D005024 ORTHO05D006396 4.3e-156 555.4 552 57.2
Duzib150G0504 Durio zibethinus HOM05D005024 ORTHO05D006396 5.6e-156 555.1 554 57.9
Manes.03G056600 Manihot esculenta HOM05D005024 ORTHO05D006396 7.3e-156 554.7 554 57.4
Duzib168G0917 Durio zibethinus HOM05D005024 ORTHO05D006396 1.2e-155 553.9 550 57.5
Nn8g38600 Nelumbo nucifera HOM05D005024 ORTHO05D006396 3.6e-155 552.4 559 57.1
RcHm_v2.0_Chr6g0304801 Rosa chinensis HOM05D005024 ORTHO05D006396 1.4e-154 550.4 547 56.1
Gohir.D07G018500 Gossypium hirsutum HOM05D005024 ORTHO05D006396 3.0e-154 549.3 553 56.1
TWI34G1336 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 3.0e-154 549.3 543 57.3
MD08G1046400 Malus domestica HOM05D005024 ORTHO05D006396 4.0e-154 548.9 567 55.4
Glyma.06G058100 Glycine max HOM05D005024 ORTHO05D006396 5.2e-154 548.5 550 56.9
Gorai.001G019200 Gossypium raimondii HOM05D005024 ORTHO05D006396 5.2e-154 548.5 553 56.2
Migut.A00327 Erythranthe guttata HOM05D005024 ORTHO05D006396 1.2e-153 547.4 560 56.6
Gohir.A07G018700 Gossypium hirsutum HOM05D005024 ORTHO05D006396 5.8e-153 545.0 552 55.4
MD15G1047400 Malus domestica HOM05D005024 ORTHO05D006396 5.8e-153 545.0 547 55.9
TWI63G0562 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 3.7e-152 542.3 548 56.4
Dinv41847 Davidia involucrata HOM05D005024 ORTHO05D006396 1.9e-151 540.0 521 58.9
FvH4_2g36960 Fragaria vesca HOM05D005024 ORTHO05D006396 2.4e-151 539.7 547 55.6
Ca_15807_v3 Cicer arietinum L. HOM05D005024 ORTHO05D006396 3.5e-150 535.8 549 56.6
Psat5g034920 Pisum sativum HOM05D005024 ORTHO05D006396 7.8e-150 534.6 546 55.9
Lj1g0011589 Lotus japonicus HOM05D005024 ORTHO05D006396 2.3e-149 533.1 547 56.9
Oeu045334.2 Olea europaea HOM05D005024 ORTHO05D006396 2.3e-149 533.1 589 53.7
VMungo1309G0309 Vigna mungo HOM05D005024 ORTHO05D006396 3.3e-148 529.3 549 55.6
Gohir.A05G037800 Gossypium hirsutum HOM05D005024 ORTHO05D006396 3.6e-147 525.8 550 54.5
arahy.Tifrunner.gnm1.ann1.JR430F Arachis hypogaea HOM05D005024 ORTHO05D006396 1.4e-146 523.9 548 55.5
FAN15G2531 Fragaria x ananassa HOM05D005024 ORTHO05D006396 1.8e-146 523.5 595 51.1
FAN27G2149 Fragaria x ananassa HOM05D005024 ORTHO05D006396 3.1e-146 522.7 584 51.7
FAN20G2081 Fragaria x ananassa HOM05D005024 ORTHO05D006396 1.2e-145 520.8 597 51.1
arahy.Tifrunner.gnm1.ann1.Q4799Z Arachis hypogaea HOM05D005024 ORTHO05D006396 2.0e-145 520.0 548 55.3
PSO401G0002 Papaver somniferum HOM05D005024 ORTHO05D006396 4.9e-144 515.4 560 53.0
PSO724G1181 Papaver somniferum HOM05D005024 ORTHO05D006396 3.2e-143 512.7 558 52.3
Gorai.009G039800 Gossypium raimondii HOM05D005024 ORTHO05D006396 5.4e-143 511.9 542 54.2
MELO3C011496.2 Cucumis melo HOM05D005024 ORTHO05D006396 9.2e-143 511.1 563 52.4
Medtr3g105400 Medicago truncatula HOM05D005024 ORTHO05D006396 9.2e-143 511.1 540 55.7
PSO789G0001 Papaver somniferum HOM05D005024 ORTHO05D006396 1.6e-142 510.4 562 52.8
ClCG08G009730 Citrullus lanatus HOM05D005024 ORTHO05D006396 4.6e-142 508.8 571 53.1
Lalb_Chr08g0244691 Lupinus albus HOM05D005024 ORTHO05D006396 6.0e-142 508.4 510 58.4
MSTRG.25847 Avicennia marina HOM05D005024 ORTHO05D006396 2.3e-141 506.5 548 54.0
CiPaw.15G090700 Carya illinoinensis HOM05D005024 ORTHO05D006396 2.5e-140 503.1 513 55.6
Glyma.04G057500 Glycine max HOM05D005024 ORTHO05D006396 2.5e-140 503.1 513 55.6
Lalb_Chr23g0268051 Lupinus albus HOM05D005024 ORTHO05D006396 9.5e-140 501.1 499 57.5
COL.COLO4_21162 Corchorus olitorius HOM05D005024 ORTHO05D006396 4.7e-139 498.8 542 53.5
DCAR_001244 Daucus carota HOM05D005024 ORTHO05D006396 6.2e-139 498.4 559 51.0
PGR142G1044 Punica granatum HOM05D005024 ORTHO05D006396 1.4e-138 497.3 555 53.0
Sed0007384 Sechium edule HOM05D005024 ORTHO05D006396 4.0e-138 495.7 594 50.8
HanXRQChr03g0067181 Helianthus annuus HOM05D005024 ORTHO05D006396 1.7e-136 490.3 555 52.6
Sabra06G0168600 Salix brachista HOM05D005024 ORTHO05D006396 5.4e-135 485.3 569 52.2
Prupe.1G401800 Prunus persica HOM05D005024 ORTHO05D006396 2.1e-134 483.4 553 53.5
Sc23g0006070 Simmondsia chinensis HOM05D005024 ORTHO05D006396 2.7e-134 483.0 546 49.6
GSVIVG01035495001 Vitis vinifera HOM05D005024 ORTHO05D006396 4.0e-130 469.2 441 57.8
Lsat_1_v5_gn_7_59161 Lactuca sativa HOM05D005024 ORTHO05D006396 6.8e-130 468.4 543 52.1
Gorai.004G286000 Gossypium raimondii HOM05D005024 ORTHO05D006396 7.6e-129 464.9 548 49.5
Phvul.009G083900 Phaseolus vulgaris HOM05D005024 ORTHO05D006396 2.2e-128 463.4 471 54.8
Gohir.D08G268300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 4.9e-128 462.2 548 49.3
Aqoxy4G00037 Aquilegia oxysepala HOM05D005024 ORTHO05D006396 3.3e-124 449.5 495 51.7
ECA240G2599 Erigeron canadensis HOM05D005024 ORTHO05D006396 3.3e-124 449.5 508 52.2
Gohir.D05G039300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.1e-122 444.5 542 49.8
THA.LOC104819895 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 1.3e-120 437.6 535 48.0
CsaV3_6G031850 Cucumis sativus L. HOM05D005024 ORTHO05D006396 1.7e-120 437.2 552 48.7
AT2G26270 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 7.1e-119 431.8 541 47.0
TAR624G0706 Trochodendron aralioides HOM05D005024 ORTHO05D006396 8.7e-117 424.9 434 55.8
Zm00001eb314080 Zea mays HOM05D005024 ORTHO05D006396 3.3e-116 422.9 565 42.7
Os09g0440200 Oryza sativa ssp. japonica HOM05D005024 ORTHO05D006396 1.4e-114 417.5 560 43.9
MBI19_g09934_MAGBIO Magnolia biondii HOM05D005024 ORTHO05D006396 2.4e-114 416.8 548 46.2
ECA236G2474 Erigeron canadensis HOM05D005024 ORTHO05D006396 2.6e-113 413.3 536 46.3
BcaB06g28091 Brassica carinata HOM05D005024 ORTHO05D006396 7.6e-113 411.8 551 45.2
Sp4g06550 Schrenkiella parvula HOM05D005024 ORTHO05D006396 2.2e-112 410.2 543 44.9
A04p20310 Brassica napus HOM05D005024 ORTHO05D006396 3.2e-111 406.4 554 44.0
BraA04t17610Z Brassica rapa HOM05D005024 ORTHO05D006396 3.2e-111 406.4 554 44.0
SEGI_27832 Sequoiadendron giganteum HOM05D005024 ORTHO05D006396 5.4e-111 405.6 569 45.5
CARHR115110 Cardamine hirsuta HOM05D005024 ORTHO05D006396 7.1e-111 405.2 541 45.5
BcaC02g08288 Brassica carinata HOM05D005024 ORTHO05D006396 1.3e-109 401.0 562 44.3
HanXRQChr05g0136401 Helianthus annuus HOM05D005024 ORTHO05D006396 1.8e-109 400.6 587 43.4
Lj7C207G3 Lonicera japonica HOM05D005024 ORTHO05D006396 1.8e-109 400.6 517 48.5
Aa31LG5G9530 Aethionema arabicum HOM05D005024 ORTHO05D006396 5.1e-109 399.1 566 44.0
C04p56010 Brassica napus HOM05D005024 ORTHO05D006396 5.6e-108 395.6 562 44.1
BolC4t27134H Brassica oleracea HOM05D005024 ORTHO05D006396 5.6e-108 395.6 562 44.1
CiPaw.05G157300 Carya illinoinensis HOM05D005024 ORTHO05D006396 2.4e-106 390.2 544 45.8
Cpa.g.sc82.16 Carica papaya HOM05D005024 ORTHO05D006396 6.9e-106 388.7 413 52.1
SGA_v2.0_scaffold147G36313 Striga asiatica HOM05D005024 ORTHO05D006396 2.6e-105 386.7 470 50.0
Thecc.09G065700 Theobroma cacao HOM05D005024 ORTHO05D006396 1.4e-103 380.9 402 54.0
EL10Ac2g02404 Beta vulgaris HOM05D005024 ORTHO05D006396 2.1e-102 377.1 534 43.1
CAN.G348.11 Capsicum annuum HOM05D005024 ORTHO05D006396 1.8e-98 364.0 299 69.6
BcaB08g35274 Brassica carinata HOM05D005024 ORTHO05D006396 1.0e-96 358.2 491 44.0
Oeu030211.1 Olea europaea HOM05D005024 ORTHO05D006396 1.3e-96 357.8 460 49.3
AT3G43930 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 1.4e-95 354.4 541 43.8
ATR0053G058 Amborella trichopoda HOM05D005024 ORTHO05D006396 2.5e-95 353.6 457 45.5
THA.LOC104810953 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 5.5e-95 352.4 555 42.9
Gohir.A08G247100 Gossypium hirsutum HOM05D005024 ORTHO05D006396 3.5e-94 349.7 431 46.9
AL5G21960 Arabidopsis lyrata HOM05D005024 ORTHO05D006396 4.6e-94 349.4 569 41.8
Ah.07g205360 Amaranthus hybridus HOM05D005024 ORTHO05D006396 2.6e-89 333.6 525 41.5
Haze_18325 Corylus avellana HOM05D005024 ORTHO05D006396 1.1e-87 328.2 399 50.1
Thhalv10011063m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 3.2e-87 326.6 532 41.7
SMO169G0310 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 9.7e-84 315.1 520 37.7
AagrBONN_evm.TU.Sc2ySwM_228.2412 Anthoceros agrestis HOM05D005024 ORTHO05D006396 5.3e-82 309.3 515 37.7
Carub.0004s0614 Capsella rubella HOM05D005024 ORTHO05D006396 2.0e-81 307.4 411 45.3
Rhsim06G0092200 Rhododendron simsii HOM05D005024 ORTHO05D006396 7.7e-81 305.4 409 44.5
vmacro21130 Vaccinium macrocarpon HOM05D005024 ORTHO05D006396 1.0e-80 305.1 302 53.6
HPP92_013024 Vanilla planifolia HOM05D005024 ORTHO05D006396 3.8e-80 303.1 428 42.5
Pp3c6_19110 Physcomitrium patens HOM05D005024 ORTHO05D006396 3.2e-79 300.1 517 38.9
Thhalv10001999m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 1.6e-78 297.7 410 42.9
Lsat_1_v5_gn_8_70380 Lactuca sativa HOM05D005024 ORTHO05D006396 4.5e-73 279.6 446 41.3
unitig_46.g18535 Utricularia gibba HOM05D005024 ORTHO05D006396 8.5e-72 275.4 355 47.6
CBR_g17947 Chara braunii HOM05D005024 ORTHO05D006396 4.8e-67 259.6 576 33.7
Pp3c3_23860 Physcomitrium patens HOM05D005024 ORTHO05D006396 9.1e-66 255.4 518 35.9
SHI28014 Sapria himalayana HOM05D005024 ORTHO05D006396 1.3e-64 251.5 462 37.7
TPR.G31221 Trifolium pratense HOM05D005024 ORTHO05D006396 2.6e-60 237.3 223 60.1
CiPaw.05G156800 Carya illinoinensis HOM05D005024 ORTHO05D006396 7.5e-60 235.7 263 52.9
AUR62020277 Chenopodium quinoa HOM05D005024 ORTHO05D006396 1.8e-58 231.1 375 40.5
Rhsim06G0128300 Rhododendron simsii HOM05D005024 ORTHO05D006396 1.7e-56 224.6 279 45.2
AUR62037728 Chenopodium quinoa HOM05D005024 ORTHO05D006396 2.7e-54 217.2 223 52.9
CDE07G0506 Ceratophyllum demersum HOM05D005024 ORTHO05D006396 5.4e-50 203.0 300 40.3
TPR.G3563 Trifolium pratense HOM05D005024 ORTHO05D006396 1.7e-35 154.8 137 65.0
SMO336G0001 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 1.1e-34 152.1 370 28.9
unitig_46.g18534 Utricularia gibba HOM05D005024 ORTHO05D006396 2.5e-23 114.4 149 47.7
Carub.0005s0971 Capsella rubella HOM05D005024 ORTHO05D006396 8.1e-22 109.4 197 38.1
AUR62020278 Chenopodium quinoa HOM05D005024 ORTHO05D006396 1.1e-21 109.0 68 76.5
AUR62037727 Chenopodium quinoa HOM05D005024 ORTHO05D006396 1.8e-21 108.2 69 76.8
SHI08483 Sapria himalayana HOM05D005024 ORTHO05D006396 3.1e-21 107.5 191 34.6
PSO198G0133 Papaver somniferum HOM05D005024 ORTHO05D006396 1.2e-20 105.5 69 75.4
Cpa.g.sc82.17 Carica papaya HOM05D005024 ORTHO05D006396 9.9e-20 102.4 71 73.2
TPR.G26129 Trifolium pratense HOM05D005024 ORTHO05D006396 8.6e-16 89.4 93 52.7
GSVIVG01035496001 Vitis vinifera HOM05D005024 ORTHO05D006396 1.9e-15 88.2 66 71.2
Carub.0004s0613 Capsella rubella HOM05D005024 ORTHO05D006396 7.3e-15 86.3 116 47.4
ATR0053G014 Amborella trichopoda HOM05D005024 ORTHO05D006396 2.6e-12 77.8 66 60.6
TPR.G26130 Trifolium pratense HOM05D005024 ORTHO05D006396 3.2e-10 70.9 61 65.6
CSS0013013 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 7.1e-10 69.7 104 38.5
CSS0038833 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 7.1e-10 69.7 104 38.5
Glyma.16G005600 Glycine max HOM05D001245 ORTHO05D004475 1.2e-09 68.9 105 37.1
Actinidia03424 Actinidia chinensis HOM05D001245 ORTHO05D004475 1.6e-09 68.6 86 40.7
Psat6g040520 Pisum sativum HOM05D001245 ORTHO05D004475 2.1e-09 68.2 105 37.1
CANSAT25G1503 Cannabis sativa HOM05D001245 ORTHO05D004475 2.7e-09 67.8 88 40.9
CANSAT80G2764 Cannabis sativa HOM05D001245 ORTHO05D004475 2.7e-09 67.8 151 28.5
QL02p017308 Quercus lobata HOM05D005024 ORTHO05D006396 3.5e-09 67.4 73 57.5
Phvul.002G078200 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 4.6e-09 67.0 105 36.2
CARHR070810 Cardamine hirsuta HOM05D001245 ORTHO05D004475 6.0e-09 66.6 115 36.5
Haze_18329 Corylus avellana HOM05D001982 ORTHO05D008035 6.0e-09 66.6 77 58.4
PGR042G0290 Punica granatum HOM05D001245 ORTHO05D004475 6.0e-09 66.6 88 39.8
THA.LOC104800232 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 6.0e-09 66.6 191 27.2
Dinv14685 Davidia involucrata HOM05D001245 ORTHO05D004475 1.0e-08 65.9 101 41.6
Oeu009633.1 Olea europaea HOM05D001245 ORTHO05D004475 1.0e-08 65.9 107 35.5
SGA_v2.0_scaffold354G49742 Striga asiatica HOM05D001245 ORTHO05D004475 1.0e-08 65.9 159 29.6
TPR.G30550 Trifolium pratense HOM05D001245 ORTHO05D004475 1.0e-08 65.9 105 36.2
vmacro10605 Vaccinium macrocarpon HOM05D001245 ORTHO05D004475 1.0e-08 65.9 86 43.0
Lj1g0014366 Lotus japonicus HOM05D001245 ORTHO05D004475 1.3e-08 65.5 105 36.2
Manes.02G168200 Manihot esculenta HOM05D001245 ORTHO05D004475 1.3e-08 65.5 88 38.6
Medtr1g029630 Medicago truncatula HOM05D001245 ORTHO05D004475 1.3e-08 65.5 105 36.2
Medtr7g090980 Medicago truncatula HOM05D001245 ORTHO05D004475 1.3e-08 65.5 87 39.1
Sp5g32500 Schrenkiella parvula HOM05D001245 ORTHO05D004475 1.3e-08 65.5 110 36.4
THA.LOC104810225 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 1.3e-08 65.5 105 34.3
GSVIVG01008809001 Vitis vinifera HOM05D001245 ORTHO05D004475 1.3e-08 65.5 90 37.8
Atru.chr13.1560 Acer truncatum HOM05D001245 ORTHO05D004475 1.7e-08 65.1 108 37.0
AL2G37520 Arabidopsis lyrata HOM05D001245 ORTHO05D004475 2.3e-08 64.7 86 39.5
Cc02_g29380 Coffea canephora HOM05D001245 ORTHO05D004475 3.9e-08 63.9 120 33.3
Duzib093G0162 Durio zibethinus HOM05D001245 ORTHO05D004475 3.9e-08 63.9 91 38.5
Phvul.001G070600 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 6.6e-08 63.2 104 35.6
QL09p032547 Quercus lobata HOM05D001245 ORTHO05D004475 8.7e-08 62.8 93 38.7
Thecc.08G132800 Theobroma cacao HOM05D001245 ORTHO05D004475 8.7e-08 62.8 110 36.4
Thhalv10018076m.g Eutrema salsugineum HOM05D001245 ORTHO05D004475 1.1e-07 62.4 200 29.0
CBR_g37446 Chara braunii HOM05D001245 ORTHO05D004475 2.5e-07 61.2 86 38.4
Migut.N01819 Erythranthe guttata HOM05D001245 ORTHO05D004475 2.5e-07 61.2 89 36.0
TWI34G1866 Tripterygium wilfordii HOM05D001245 ORTHO05D004475 2.5e-07 61.2 212 26.4
Ciclev10000159m.g Citrus clementina HOM05D001245 ORTHO05D004475 3.3e-07 60.8 134 29.1
Potri.005G182500 Populus trichocarpa HOM05D001245 ORTHO05D004475 3.3e-07 60.8 88 36.4
Carub.0002s2420 Capsella rubella HOM05D001245 ORTHO05D004475 4.3e-07 60.5 86 37.2
FvH4_2g27821 Fragaria vesca HOM05D001245 ORTHO05D004475 5.6e-07 60.1 92 35.9
TAR229G0002 Trochodendron aralioides HOM05D001245 ORTHO05D004475 7.3e-07 59.7 83 36.1
CBR_g899 Chara braunii HOM05D005024 ORTHO05D006396 9.6e-07 59.3 133 31.6
Nn1g08963 Nelumbo nucifera HOM05D001245 ORTHO05D004475 1.3e-06 58.9 91 38.5
Gohir.A02G110400 Gossypium hirsutum HOM05D001245 ORTHO05D004475 1.6e-06 58.5 106 32.1
Gohir.D03G069003 Gossypium hirsutum HOM05D001245 ORTHO05D004475 1.6e-06 58.5 106 32.1
Cfa018127 Carpinus fangiana HOM05D001245 ORTHO05D004475 3.6e-06 57.4 100 34.0
Sed0010713 Sechium edule HOM05D001245 ORTHO05D004475 4.8e-06 57.0 84 33.3
PSO170G6194 Papaver somniferum HOM05D001245 ORTHO05D004475 6.2e-06 56.6 91 36.3


User provided reference genes

Program Settings