Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 0.0e+00 1923.3 998 100.0
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 0.0e+00 1728.0 968 93.6
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 0.0e+00 1543.5 923 88.3
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 0.0e+00 1425.2 921 83.1
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 0.0e+00 1322.8 965 76.7
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 0.0e+00 1263.4 960 68.8
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 0.0e+00 1252.3 964 67.3
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 0.0e+00 1250.7 963 67.7
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1250.0 963 68.2
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 0.0e+00 1232.2 963 67.0
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 0.0e+00 1224.5 900 70.4
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 0.0e+00 1222.2 961 67.0
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 0.0e+00 1219.9 964 66.6
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 0.0e+00 1209.1 964 65.5
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 0.0e+00 1207.2 961 65.1
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 0.0e+00 1200.7 962 65.5
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 0.0e+00 1196.8 958 65.6
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 0.0e+00 1194.5 830 77.6
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 0.0e+00 1193.3 962 64.7
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 0.0e+00 1189.9 963 65.0
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 0.0e+00 1188.3 1037 62.2
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 0.0e+00 1184.1 961 64.4
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 0.0e+00 1176.4 960 63.9
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 0.0e+00 1174.5 963 63.9
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1172.9 960 63.8
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1171.8 960 64.0
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 0.0e+00 1171.8 960 64.6
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 0.0e+00 1167.1 983 63.3
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 0.0e+00 1166.8 960 64.3
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 0.0e+00 1156.4 958 63.6
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 0.0e+00 1152.9 1082 59.7
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1152.1 964 63.6
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1151.7 961 63.6
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1150.2 970 63.5
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 0.0e+00 1137.9 961 63.2
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 0.0e+00 1133.6 961 62.3
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1133.2 976 62.2
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 0.0e+00 1132.5 963 62.8
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 0.0e+00 1130.2 964 62.3
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 0.0e+00 1129.0 954 62.3
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 0.0e+00 1128.6 958 62.4
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 0.0e+00 1127.9 968 62.0
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 0.0e+00 1122.8 972 61.8
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 0.0e+00 1120.9 962 62.5
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 0.0e+00 1120.5 905 64.5
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1119.0 975 62.2
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 0.0e+00 1118.6 1001 59.4
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 0.0e+00 1118.6 964 62.7
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 0.0e+00 1113.6 924 63.7
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 0.0e+00 1113.6 972 61.5
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 0.0e+00 1111.3 964 62.1
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 0.0e+00 1107.8 959 61.6
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 0.0e+00 1101.7 964 61.4
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 0.0e+00 1099.7 963 61.7
HanXRQChr10g0292821 Helianthus annuus HOM05D004564 ORTHO05D006106 0.0e+00 1098.6 946 61.6
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 0.0e+00 1092.4 972 60.8
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 0.0e+00 1078.2 961 59.0
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1076.2 958 59.6
COL.COLO4_38399 Corchorus olitorius HOM05D004564 ORTHO05D006106 6.8e-312 1073.9 981 58.6
FAN05G0785 Fragaria x ananassa HOM05D004564 ORTHO05D006106 1.8e-310 1069.3 1125 53.9
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 8.5e-305 1050.4 1182 52.3
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 2.5e-304 1048.9 962 56.8
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 1.2e-303 1046.6 962 57.2
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 2.1e-303 1045.8 951 60.8
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 2.7e-303 1045.4 958 57.3
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 3.0e-302 1042.0 960 57.0
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 2.0e-301 1039.3 962 56.3
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 2.6e-301 1038.9 963 56.8
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 2.6e-301 1038.9 967 58.7
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 3.4e-301 1038.5 962 56.2
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 5.7e-301 1037.7 958 57.6
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 4.8e-300 1034.6 960 57.4
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 8.3e-300 1033.9 961 57.3
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 2.7e-298 1028.9 1005 56.2
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 8.0e-295 1017.3 962 56.3
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 1.3e-292 1010.0 813 65.6
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 7.3e-288 994.2 958 55.6
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 9.5e-288 993.8 915 57.3
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 1.2e-285 986.9 958 54.8
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 2.6e-285 985.7 962 54.6
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 5.4e-283 978.0 969 58.1
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 9.2e-283 977.2 986 53.5
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 3.4e-277 958.7 756 68.3
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 2.0e-274 949.5 812 61.8
unitig_37.g12587 Utricularia gibba HOM05D004564 ORTHO05D006106 2.7e-274 949.1 982 54.1
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 3.5e-274 948.7 965 53.4
C08p51140 Brassica napus HOM05D004564 ORTHO05D006106 3.6e-271 938.7 958 53.1
BolC8t52640H Brassica oleracea HOM05D004564 ORTHO05D006106 2.6e-269 932.6 975 52.2
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 1.9e-267 926.4 777 63.4
Os12g0626300 Oryza sativa ssp. japonica HOM05D004564 ORTHO05D006106 1.1e-256 890.6 974 51.2
Zm00001eb128180 Zea mays HOM05D004564 ORTHO05D006106 8.7e-249 864.4 960 50.0
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 1.9e-248 863.2 772 60.4
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 2.1e-247 859.8 679 67.3
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 3.1e-230 802.7 692 62.0
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 3.6e-218 762.7 651 62.7
vmacro08736 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 1.6e-194 684.1 569 64.9
CARHR006200 Cardamine hirsuta HOM05D004564 ORTHO05D006106 8.5e-188 661.8 609 57.6
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 4.0e-185 652.9 620 56.9
Psat2g017120 Pisum sativum HOM05D004564 ORTHO05D006106 2.0e-168 597.4 419 71.1
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 1.0e-164 585.1 489 63.8
ATR0763G133 Amborella trichopoda HOM05D004564 ORTHO05D006106 6.6e-164 582.4 597 53.6
Pp3c3_33140 Physcomitrium patens HOM05D004564 ORTHO05D006106 3.4e-160 570.1 961 39.5
BcaNung07074 Brassica carinata HOM05D004564 ORTHO05D006106 2.3e-148 530.8 423 63.1
AagrBONN_evm.TU.Sc2ySwM_228.5505 Anthoceros agrestis HOM05D004564 ORTHO05D006106 1.2e-146 525.0 985 37.4
Hma1.2p1_0539F.1_g174590 Hydrangea macrophylla HOM05D004564 ORTHO05D006106 4.7e-146 523.1 410 64.4
SHI30099 Sapria himalayana HOM05D004564 ORTHO05D006106 1.1e-142 511.9 605 49.3
FAN02G2671 Fragaria x ananassa HOM05D004564 ORTHO05D006106 5.1e-140 503.1 508 56.3
MBI18_g13604_MAGBIO Magnolia biondii HOM05D004564 ORTHO05D006106 4.3e-139 500.0 949 35.6
SMO174G0184 Selaginella moellendorffii HOM05D004564 ORTHO05D006106 3.4e-136 490.3 945 35.2
vmacro08737 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 7.6e-128 462.6 635 44.4
Mapoly0007s0190 Marchantia polymorpha HOM05D004564 ORTHO05D006106 2.2e-127 461.1 971 34.1
Lalb_Chr10g0106581 Lupinus albus HOM05D004564 ORTHO05D006106 2.6e-112 411.0 291 72.2
CAN.G3149.1 Capsicum annuum HOM05D004564 ORTHO05D006106 4.6e-109 400.2 228 94.7
arahy.Tifrunner.gnm1.ann1.UKG9X7 Arachis hypogaea HOM05D004564 ORTHO05D006106 2.5e-94 351.3 352 55.7
CBR_g44342 Chara braunii HOM05D000019 ORTHO05D000353 9.4e-94 349.4 614 37.0
HPP92_001899 Vanilla planifolia HOM05D004564 ORTHO05D006106 6.7e-92 343.2 735 34.4
GSVIVG01013077001 Vitis vinifera HOM05D004564 ORTHO05D006106 2.4e-89 334.7 233 73.4
SEGI_14916 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 9.4e-86 322.8 272 59.2
MD17G1134700 Malus domestica HOM05D004564 ORTHO05D006106 2.3e-76 291.6 283 58.3
HPP92_001867 Vanilla planifolia HOM05D004564 ORTHO05D006106 3.2e-70 271.2 521 38.8
Glyma.02G284500 Glycine max HOM05D004564 ORTHO05D006106 2.9e-63 248.1 208 62.5
Peaxi162Scf00922g00318 Petunia axillaris HOM05D004564 ORTHO05D006106 1.2e-59 236.1 130 93.8
TAR626G0359 Trochodendron aralioides HOM05D004564 ORTHO05D006106 5.7e-59 233.8 151 73.5
MD17G1134600 Malus domestica HOM05D004564 ORTHO05D006106 5.0e-47 194.1 261 44.4
CDE02G3007 Ceratophyllum demersum HOM05D004564 ORTHO05D006106 1.1e-46 193.0 144 66.0
TAR626G0994 Trochodendron aralioides HOM05D004564 ORTHO05D006106 2.1e-29 135.6 95 64.2
SHI30097 Sapria himalayana HOM05D004564 ORTHO05D006106 6.2e-29 134.0 221 36.2
BcaNung07000 Brassica carinata HOM05D004564 ORTHO05D006106 8.4e-26 123.6 163 42.3
ATR0763G243 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.1e-24 119.0 125 46.4
ATR0763G128 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.7e-24 118.6 82 64.6
arahy.Tifrunner.gnm1.ann1.RHC2N4 Arachis hypogaea HOM05D000056 ORTHO05D006106 3.9e-23 114.8 160 45.0
ATR0820G167 Amborella trichopoda HOM05D004564 ORTHO05D006106 4.3e-22 111.3 120 50.8
Rhsim02G0232100 Rhododendron simsii HOM05D000252 ORTHO05D000307 4.0e-20 104.8 103 61.2
Rhsim12G0011200 Rhododendron simsii HOM05D004564 ORTHO05D000827 9.0e-20 103.6 100 59.0
Zm00001eb370760 Zea mays HOM05D004564 ORTHO05D006106 2.6e-19 102.1 83 66.3
Phvul.001G172501 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 3.8e-18 98.2 137 44.5
Lj5g0002046 Lotus japonicus HOM05D004564 ORTHO05D000491 1.1e-17 96.7 197 35.5
TPR.G10922 Trifolium pratense HOM05D004564 ORTHO05D006106 1.1e-17 96.7 84 64.3
ATR0598G245 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.1e-14 86.7 153 39.9
Lalb_Chr10g0106561 Lupinus albus HOM05D004564 ORTHO05D006106 2.5e-14 85.5 59 66.1
MCO11G813 Micromonas commoda HOM05D004564 ORTHO05D006106 4.0e-12 78.2 912 20.6
Rhsim12G0011600 Rhododendron simsii HOM05D004564 ORTHO05D000827 1.5e-11 76.3 103 49.5
Cre01.g034650 Chlamydomonas reinhardtii HOM05D004564 ORTHO05D006106 3.4e-11 75.1 1017 19.4
TPR.G7402 Trifolium pratense HOM05D023930 ORTHO05D006106 5.8e-11 74.3 132 42.4
Rhsim12G0011100 Rhododendron simsii HOM05D004564 ORTHO05D006106 7.6e-11 73.9 69 49.3
Rhsim12G0011500 Rhododendron simsii HOM05D004564 ORTHO05D006106 1.7e-10 72.8 81 43.2
TPR.G35705 Trifolium pratense HOM05D023930 ORTHO05D018030 1.7e-10 72.8 133 42.1
SEGI_30840 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 1.4e-09 69.7 127 33.9
Lj5g0014248 Lotus japonicus HOM05D004564 ORTHO05D006106 6.7e-07 60.8 99 36.4
SHI30098 Sapria himalayana HOM05D004564 ORTHO05D006106 1.9e-06 59.3 240 27.5
SEGI_33722 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 9.6e-06 57.0 83 47.0


User provided reference genes

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