Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g067170.3 Solanum lycopersicum HOM05D008288 ORTHO05D010469 1.2e-161 573.2 311 100.0
Sopen08g021110 Solanum pennellii HOM05D008288 ORTHO05D010469 3.5e-156 555.1 309 97.7
Nitab4.5_0015147g0010 Nicotiana tabacum HOM05D008288 ORTHO05D010469 1.3e-139 500.0 306 88.2
CAN.G348.1 Capsicum annuum HOM05D008288 ORTHO05D010469 5.6e-138 494.6 309 86.1
Peaxi162Scf00341g00011 Petunia axillaris HOM05D008288 ORTHO05D010469 7.4e-130 467.6 291 86.6
Nitab4.5_0000151g0060 Nicotiana tabacum HOM05D008288 ORTHO05D010469 1.6e-124 449.9 270 89.3
CSS0049569 Camellia sinensis var. sinensis HOM05D008288 ORTHO05D010469 2.2e-105 386.3 304 71.1
Actinidia22367 Actinidia chinensis HOM05D008288 ORTHO05D010469 5.3e-104 381.7 288 72.6
Hma1.2p1_0000F.1_g000730 Hydrangea macrophylla HOM05D008288 ORTHO05D010469 2.5e-101 372.9 292 69.5
MD15G1120900 Malus domestica HOM05D008288 ORTHO05D010469 7.2e-101 371.3 288 69.4
Thecc.09G149300 Theobroma cacao HOM05D008288 ORTHO05D010469 4.7e-100 368.6 288 69.8
Duzib150G0406 Durio zibethinus HOM05D008288 ORTHO05D010469 1.8e-99 366.7 291 67.4
Potri.006G251000 Populus trichocarpa HOM05D008288 ORTHO05D010469 2.3e-99 366.3 307 67.4
FAN27G1450 Fragaria x ananassa HOM05D008288 ORTHO05D010469 3.3e-98 362.5 303 66.3
TWI34G1005 Tripterygium wilfordii HOM05D008288 ORTHO05D010469 3.3e-98 362.5 290 69.0
FAN15G2470 Fragaria x ananassa HOM05D008288 ORTHO05D010469 4.4e-98 362.1 303 66.3
FvH4_2g29591 Fragaria vesca HOM05D008288 ORTHO05D010469 3.7e-97 359.0 304 66.4
RcHm_v2.0_Chr6g0298581 Rosa chinensis HOM05D008288 ORTHO05D010469 4.8e-97 358.6 288 67.4
COL.COLO4_23981 Corchorus olitorius HOM05D008288 ORTHO05D010469 4.1e-96 355.5 292 67.8
Gorai.009G050100 Gossypium raimondii HOM05D008288 ORTHO05D010469 1.5e-95 353.6 309 64.7
Gohir.A05G047000 Gossypium hirsutum HOM05D008288 ORTHO05D010469 3.5e-95 352.4 309 64.4
PGR031G1353 Punica granatum HOM05D008288 ORTHO05D010469 1.3e-94 350.5 288 67.7
Gohir.D05G048766 Gossypium hirsutum HOM05D008288 ORTHO05D010469 1.7e-94 350.1 309 64.1
QL02p022482 Quercus lobata HOM05D008288 ORTHO05D010469 1.7e-94 350.1 288 67.4
TAR625G1133 Trochodendron aralioides HOM05D008288 ORTHO05D010469 2.9e-94 349.4 292 65.8
Ciclev10010324m.g Citrus clementina HOM05D008288 ORTHO05D010469 1.9e-93 346.7 288 65.6
Atru.chr7.2381 Acer truncatum HOM05D008288 ORTHO05D010469 9.4e-93 344.4 292 64.4
Aqoxy7G02071 Aquilegia oxysepala HOM05D008288 ORTHO05D010469 1.6e-92 343.6 288 62.8
MD08G1145200 Malus domestica HOM05D008288 ORTHO05D010469 3.6e-92 342.4 288 66.0
Cpa.g.sc91.46 Carica papaya HOM05D008288 ORTHO05D010469 2.4e-88 329.7 280 65.7
DCAR_007695 Daucus carota HOM05D008288 ORTHO05D010469 2.6e-87 326.2 269 68.4
MBI04_g10412_MAGBIO Magnolia biondii HOM05D008288 ORTHO05D010469 2.6e-87 326.2 290 62.4
CsaV3_3G046560 Cucumis sativus L. HOM05D008288 ORTHO05D010469 3.5e-87 325.9 311 58.2
Phvul.009G095100 Phaseolus vulgaris HOM05D008288 ORTHO05D010469 5.9e-87 325.1 289 62.6
Sed0020459 Sechium edule HOM05D008288 ORTHO05D010469 5.0e-86 322.0 286 60.8
ClCG05G017080 Citrullus lanatus HOM05D008288 ORTHO05D010469 3.2e-85 319.3 304 59.5
VMungo1309G1559 Vigna mungo HOM05D008288 ORTHO05D010469 3.2e-85 319.3 289 61.2
SalBow4G3001 Salvia bowleyana HOM05D008288 ORTHO05D010469 3.6e-84 315.8 289 63.0
Migut.A00319 Erythranthe guttata HOM05D008288 ORTHO05D010469 6.1e-84 315.1 295 62.0
Psat0ss3186g0240 Pisum sativum HOM05D008288 ORTHO05D010469 1.2e-82 310.8 302 58.6
Prupe.1G473500 Prunus persica HOM05D008288 ORTHO05D010469 1.5e-82 310.5 293 59.7
TPR.G31773 Trifolium pratense HOM05D008288 ORTHO05D010469 8.3e-81 304.7 299 58.9
PSO455G0067 Papaver somniferum HOM05D008288 ORTHO05D010469 7.0e-80 301.6 304 57.6
Ca_15724_v3 Cicer arietinum L. HOM05D008288 ORTHO05D010469 1.6e-79 300.4 297 58.2
Medtr3g107650 Medicago truncatula HOM05D008288 ORTHO05D010469 2.9e-78 296.2 298 57.4
Eucgr.C01784 Eucalyptus grandis HOM05D008288 ORTHO05D010469 3.8e-78 295.8 308 57.8
Dinv11620 Davidia involucrata HOM05D008288 ORTHO05D010469 1.9e-77 293.5 204 75.0
PSO170G5425 Papaver somniferum HOM05D008288 ORTHO05D010469 5.2e-75 285.4 304 56.9
Haze_21560 Corylus avellana HOM05D008288 ORTHO05D010469 1.7e-73 280.4 293 57.7
Manes.16G119800 Manihot esculenta HOM05D008288 ORTHO05D010469 7.0e-72 275.0 304 54.9
MELO3C003683.2 Cucumis melo HOM05D008288 ORTHO05D010469 2.0e-66 256.9 309 48.9
Dinv30173 Davidia involucrata HOM05D008288 ORTHO05D010469 1.4e-64 250.8 291 55.0
Glyma.04G068600 Glycine max HOM05D008288 ORTHO05D010469 1.2e-63 247.7 241 58.9
Lj1g0026401 Lotus japonicus HOM05D008288 ORTHO05D010469 7.3e-61 238.4 241 55.6
Cfa013175 Carpinus fangiana HOM05D008288 ORTHO05D010469 6.0e-55 218.8 215 58.6
Lsat_1_v5_gn_1_45101 Lactuca sativa HOM05D008288 ORTHO05D010469 7.8e-55 218.4 200 60.5
CANSAT54G0155 Cannabis sativa HOM05D008288 ORTHO05D010469 4.7e-52 209.1 183 58.5
Solyc08g069220.2 Solanum lycopersicum HOM05D008288 ORTHO05D010469 6.6e-46 188.7 274 49.6
ATR0815G056 Amborella trichopoda HOM05D008288 ORTHO05D010469 4.6e-39 166.0 275 40.0
Sopen08g022840 Solanum pennellii HOM05D008288 ORTHO05D010469 3.5e-31 139.8 83 86.7
SEGI_16453 Sequoiadendron giganteum HOM05D008288 ORTHO05D010469 1.6e-20 104.4 300 30.7
CsaV3_6G001940 Cucumis sativus L. HOM05D000215 ORTHO05D008904 9.6e-13 78.6 278 28.1
ClCG11G006020 Citrullus lanatus HOM05D000215 ORTHO05D008904 2.1e-12 77.4 278 27.7
MELO3C008310.2 Cucumis melo HOM05D000215 ORTHO05D008904 2.1e-12 77.4 278 27.7
Pp3c26_8290 Physcomitrium patens HOM05D006338 ORTHO05D007946 1.8e-11 74.3 288 30.2
SGA_v2.0_scaffold77G25280 Striga asiatica HOM05D000215 ORTHO05D002282 1.8e-11 74.3 284 25.0
BcaC07g39773 Brassica carinata HOM05D000215 ORTHO05D001676 2.4e-11 73.9 283 28.3
Medtr7g053260 Medicago truncatula HOM05D000215 ORTHO05D002282 5.3e-11 72.8 281 25.6
SHI10321 Sapria himalayana HOM05D000215 ORTHO05D002282 9.0e-11 72.0 287 27.5
Manes.08G146901 Manihot esculenta HOM05D000215 ORTHO05D002282 1.2e-10 71.6 282 27.3
Manes.08G147000 Manihot esculenta HOM05D000215 ORTHO05D002282 2.0e-10 70.9 282 27.3
Thecc.02G244100 Theobroma cacao HOM05D000215 ORTHO05D003454 2.0e-10 70.9 286 27.6
Aa31LG1G16780 Aethionema arabicum HOM05D002131 ORTHO05D002141 4.5e-10 69.7 288 27.1
Lsat_1_v5_gn_9_17860 Lactuca sativa HOM05D000215 ORTHO05D002282 4.5e-10 69.7 290 26.6
Manes.08G146800 Manihot esculenta HOM05D000215 ORTHO05D002282 4.5e-10 69.7 282 27.0
Lalb_Chr10g0105221 Lupinus albus HOM05D000215 ORTHO05D008904 5.8e-10 69.3 278 27.3
Nitab4.5_0006979g0020 Nicotiana tabacum HOM05D000215 ORTHO05D002282 5.8e-10 69.3 285 27.7
Actinidia13517 Actinidia chinensis HOM05D000215 ORTHO05D003454 1.0e-09 68.6 281 26.0
MSTRG.18818 Avicennia marina HOM05D000215 ORTHO05D002282 1.0e-09 68.6 276 25.0
Haze_12167 Corylus avellana HOM05D000215 ORTHO05D003454 1.0e-09 68.6 280 27.1
Gohir.A11G141000 Gossypium hirsutum HOM05D000215 ORTHO05D002282 1.0e-09 68.6 288 25.3
HanXRQChr07g0193091 Helianthus annuus HOM05D000215 ORTHO05D002282 1.0e-09 68.6 290 26.9
Cfa009134 Carpinus fangiana HOM05D000215 ORTHO05D003454 1.7e-09 67.8 280 27.1
TPR.G13914 Trifolium pratense HOM05D000215 ORTHO05D007108 1.7e-09 67.8 268 29.5
HanXRQChr08g0231761 Helianthus annuus HOM05D000215 ORTHO05D002282 3.8e-09 66.6 290 27.2
Eucgr.B00358 Eucalyptus grandis HOM05D000215 ORTHO05D003454 4.9e-09 66.2 274 28.1
Gohir.A03G140500 Gossypium hirsutum HOM05D000215 ORTHO05D003454 4.9e-09 66.2 280 27.9
Medtr2g011140 Medicago truncatula HOM05D000215 ORTHO05D007108 4.9e-09 66.2 229 31.4
PGR119G1373 Punica granatum HOM05D000215 ORTHO05D003454 6.5e-09 65.9 280 28.2
Rhsim12G0121400 Rhododendron simsii HOM05D000215 ORTHO05D003454 6.5e-09 65.9 281 26.7
COL.COLO4_36974 Corchorus olitorius HOM05D000215 ORTHO05D003454 1.1e-08 65.1 286 26.6
Lsat_1_v5_gn_2_123761 Lactuca sativa HOM05D000215 ORTHO05D008904 1.1e-08 65.1 278 27.3
Duzib268G0442 Durio zibethinus HOM05D000215 ORTHO05D003454 1.4e-08 64.7 279 26.5
Gohir.D02G163200 Gossypium hirsutum HOM05D000215 ORTHO05D003454 1.4e-08 64.7 278 26.3
Gorai.005G183200 Gossypium raimondii HOM05D000215 ORTHO05D003454 1.4e-08 64.7 278 26.3
Lj6P804T36 Lonicera japonica HOM05D000215 ORTHO05D003454 1.9e-08 64.3 267 26.6
Ciclev10030876m.g Citrus clementina HOM05D000215 ORTHO05D003454 2.5e-08 63.9 284 27.1
Eucgr.H02615 Eucalyptus grandis HOM05D000215 ORTHO05D003454 2.5e-08 63.9 269 24.5
Glyma.02G264200 Glycine max HOM05D000215 ORTHO05D008904 2.5e-08 63.9 278 27.0
MSTRG.20988 Avicennia marina HOM05D000215 ORTHO05D002282 3.2e-08 63.5 273 25.6
Phvul.003G199200 Phaseolus vulgaris HOM05D000215 ORTHO05D003454 3.2e-08 63.5 273 24.5
THA.LOC104805417 Tarenaya hassleriana HOM05D002131 ORTHO05D002141 3.2e-08 63.5 282 28.7
MD09G1261900 Malus domestica HOM05D001865 ORTHO05D001815 5.5e-08 62.8 287 23.7
MD04G1235600 Malus domestica HOM05D000215 ORTHO05D002282 7.1e-08 62.4 285 25.3
VMungo1215G2056 Vigna mungo HOM05D000215 ORTHO05D003454 7.1e-08 62.4 274 25.5
Lalb_Chr20g0122541 Lupinus albus HOM05D000215 ORTHO05D007108 9.3e-08 62.0 281 28.8
MBI03_g03960_MAGBIO Magnolia biondii HOM05D000215 ORTHO05D008904 9.3e-08 62.0 278 27.3
Pp3c9_17040 Physcomitrium patens HOM05D000215 ORTHO05D008904 9.3e-08 62.0 287 26.1
Pp3c9_17047 Physcomitrium patens HOM05D000215 ORTHO05D008904 9.3e-08 62.0 287 26.1
QL09p048947 Quercus lobata HOM05D000215 ORTHO05D002282 9.3e-08 62.0 287 25.8
FAN23G2654 Fragaria x ananassa HOM05D001865 ORTHO05D001815 1.2e-07 61.6 289 23.9
Psat7g107360 Pisum sativum HOM05D000215 ORTHO05D007108 1.2e-07 61.6 214 29.9
Sabra10G0143200 Salix brachista HOM05D000215 ORTHO05D008904 1.2e-07 61.6 278 26.6
SHI02135 Sapria himalayana HOM05D000215 ORTHO05D007108 1.2e-07 61.6 243 29.6
DCAR_026544 Daucus carota HOM05D000215 ORTHO05D003454 1.6e-07 61.2 278 26.6
FvH4_1g29130 Fragaria vesca HOM05D001865 ORTHO05D001815 1.6e-07 61.2 289 23.9
FAN19G0114 Fragaria x ananassa HOM05D001865 ORTHO05D001815 1.6e-07 61.2 289 23.9
FAN28G1515 Fragaria x ananassa HOM05D001865 ORTHO05D001815 1.6e-07 61.2 289 23.9
Thecc.03G009700 Theobroma cacao HOM05D000215 ORTHO05D003454 1.6e-07 61.2 278 26.6
Medtr4g091880 Medicago truncatula HOM05D000215 ORTHO05D007108 2.1e-07 60.8 219 27.4
Cpa.g.sc69.15 Carica papaya HOM05D000215 ORTHO05D003454 2.7e-07 60.5 271 25.5
AUR62012536 Chenopodium quinoa HOM05D000215 ORTHO05D007108 3.5e-07 60.1 208 28.4
ECA233G0075 Erigeron canadensis HOM05D000215 ORTHO05D003454 3.5e-07 60.1 272 26.1
TAR629G3507 Trochodendron aralioides HOM05D000215 ORTHO05D003454 3.5e-07 60.1 280 27.1
Aqoxy4G02432 Aquilegia oxysepala HOM05D000215 ORTHO05D008904 4.6e-07 59.7 125 34.4
AUR62014659 Chenopodium quinoa HOM05D000215 ORTHO05D007108 4.6e-07 59.7 219 28.3
AUR62044176 Chenopodium quinoa HOM05D000215 ORTHO05D007108 4.6e-07 59.7 219 28.3
Dinv17864 Davidia involucrata HOM05D000215 ORTHO05D007108 4.6e-07 59.7 277 28.9
Lj4g0004386 Lotus japonicus HOM05D000215 ORTHO05D007108 6.0e-07 59.3 254 27.2
MBI02_g37288_MAGBIO Magnolia biondii HOM05D000215 ORTHO05D007108 6.0e-07 59.3 224 27.7
PSO210G4266 Papaver somniferum HOM05D000215 ORTHO05D007108 6.0e-07 59.3 220 30.5
Glyma.13G249400 Glycine max HOM05D000215 ORTHO05D007108 7.9e-07 58.9 251 28.3
Hma1.2p1_0176F.1_g077670 Hydrangea macrophylla HOM05D000215 ORTHO05D003454 7.9e-07 58.9 279 25.8
PSO832G3300 Papaver somniferum HOM05D000215 ORTHO05D007108 7.9e-07 58.9 220 30.9
VMungo1215G2548 Vigna mungo HOM05D000215 ORTHO05D003454 7.9e-07 58.9 276 26.8
ECA246G0614 Erigeron canadensis HOM05D001816 ORTHO05D002001 1.0e-06 58.5 273 24.2
Potri.010G185900 Populus trichocarpa HOM05D000215 ORTHO05D008904 1.0e-06 58.5 126 34.9
EL10Ac5g10778 Beta vulgaris HOM05D000215 ORTHO05D003454 1.3e-06 58.2 274 26.6
Manes.06G103300 Manihot esculenta HOM05D000215 ORTHO05D003454 1.3e-06 58.2 272 24.3
Prupe.1G255000 Prunus persica HOM05D000215 ORTHO05D003454 1.3e-06 58.2 288 27.1
ClCG07G002170 Citrullus lanatus HOM05D000215 ORTHO05D002282 1.8e-06 57.8 284 25.0
MD07G1049200 Malus domestica HOM05D006338 ORTHO05D007946 1.8e-06 57.8 291 27.5
Pp3c24_15640 Physcomitrium patens HOM05D000215 ORTHO05D008904 1.8e-06 57.8 278 26.3
Prupe.3G159600 Prunus persica HOM05D001865 ORTHO05D001815 1.8e-06 57.8 287 24.0
GSVIVG01006112001 Vitis vinifera HOM05D000215 ORTHO05D007108 1.8e-06 57.8 246 27.2
arahy.Tifrunner.gnm1.ann1.0GZ16Q Arachis hypogaea HOM05D000215 ORTHO05D007108 2.3e-06 57.4 240 28.3
CiPaw.05G150000 Carya illinoinensis HOM05D000215 ORTHO05D003454 2.3e-06 57.4 275 24.7
CDE05G3606 Ceratophyllum demersum HOM05D000766 ORTHO05D000587 2.3e-06 57.4 241 28.6
Nitab4.5_0000296g0130 Nicotiana tabacum HOM05D000215 ORTHO05D002282 2.3e-06 57.4 281 25.6
QL05p077977 Quercus lobata HOM05D000215 ORTHO05D007108 2.3e-06 57.4 268 25.7
Sc11g0001230 Simmondsia chinensis HOM05D000215 ORTHO05D003454 2.3e-06 57.4 282 24.5
TAR627G1172 Trochodendron aralioides HOM05D000215 ORTHO05D007108 2.3e-06 57.4 202 30.2
Ca_18466_v3 Cicer arietinum L. HOM05D000215 ORTHO05D007108 3.0e-06 57.0 219 28.8
Ca_29638_v3 Cicer arietinum L. HOM05D000215 ORTHO05D007108 3.0e-06 57.0 219 28.8
LjContig00357g0010556 Lotus japonicus HOM05D000215 ORTHO05D008904 3.0e-06 57.0 126 33.3
Manes.07G132300 Manihot esculenta HOM05D000215 ORTHO05D008904 3.0e-06 57.0 118 38.1
Phvul.008G222100 Phaseolus vulgaris HOM05D000215 ORTHO05D008904 3.0e-06 57.0 126 33.3
Glyma.15G064800 Glycine max HOM05D000215 ORTHO05D007108 3.9e-06 56.6 261 25.3
arahy.Tifrunner.gnm1.ann1.KQ5WJ5 Arachis hypogaea HOM05D000271 ORTHO05D004758 5.1e-06 56.2 294 28.9
GSVIVG01032778001 Vitis vinifera HOM05D000215 ORTHO05D008904 5.1e-06 56.2 129 35.7
CiPaw.10G113900 Carya illinoinensis HOM05D000215 ORTHO05D007108 6.7e-06 55.8 248 29.4
COL.COLO4_34053 Corchorus olitorius HOM05D000215 ORTHO05D003454 6.7e-06 55.8 270 26.3
Glyma.06G183800 Glycine max HOM05D000215 ORTHO05D003454 6.7e-06 55.8 293 25.6
Lsat_1_v5_gn_5_17060 Lactuca sativa HOM05D000215 ORTHO05D003454 6.7e-06 55.8 232 24.1
Pp3c17_14150 Physcomitrium patens HOM05D000577 ORTHO05D003389 8.7e-06 55.5 136 33.8


User provided reference genes

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