Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g067120.3 Solanum lycopersicum HOM05D005011 ORTHO05D006443 9.3e-30 132.9 67 100.0
Sopen09g002500 Solanum pennellii HOM05D005011 ORTHO05D006443 1.3e-28 129.0 66 97.0
Solyc09g007630.3 Solanum lycopersicum HOM05D005011 ORTHO05D006443 1.7e-28 128.6 66 97.0
Peaxi162Scf00182g00120 Petunia axillaris HOM05D005011 ORTHO05D006443 3.6e-26 120.9 65 89.2
Nitab4.5_0000101g0010 Nicotiana tabacum HOM05D005011 ORTHO05D006443 1.9e-22 108.6 67 83.6
Nitab4.5_0005150g0050 Nicotiana tabacum HOM05D005011 ORTHO05D006443 1.9e-22 108.6 67 83.6
Oeu059978.1 Olea europaea HOM05D005011 ORTHO05D006443 5.6e-19 97.1 65 70.8
Oeu014965.1 Olea europaea HOM05D005011 ORTHO05D006443 1.3e-18 95.9 65 69.2
MSTRG.26712 Avicennia marina HOM05D005011 ORTHO05D006443 1.4e-17 92.4 65 66.2
Lj2A111T58 Lonicera japonica HOM05D005011 ORTHO05D006443 5.3e-17 90.5 57 75.4
SGA_v2.0_scaffold452G51844 Striga asiatica HOM05D005011 ORTHO05D006443 9.0e-17 89.7 61 67.2
Migut.L01677 Erythranthe guttata HOM05D005011 ORTHO05D006443 9.9e-16 86.3 67 64.2
DCAR_009276 Daucus carota HOM05D005011 ORTHO05D006443 1.7e-15 85.5 65 61.5
CSS0006107 Camellia sinensis var. sinensis HOM05D005011 ORTHO05D006443 2.2e-15 85.1 56 71.4
Hma1.2p1_0614F.1_g189520 Hydrangea macrophylla HOM05D005011 ORTHO05D006443 2.2e-15 85.1 57 70.2
Duzib128G0881 Durio zibethinus HOM05D005011 ORTHO05D006443 6.4e-15 83.6 66 56.1
Gohir.D09G146300 Gossypium hirsutum HOM05D005011 ORTHO05D006443 8.4e-15 83.2 66 57.6
Gorai.006G167500 Gossypium raimondii HOM05D005011 ORTHO05D006443 8.4e-15 83.2 66 57.6
Actinidia19688 Actinidia chinensis HOM05D005011 ORTHO05D006443 1.9e-14 82.0 55 69.1
Prupe.6G238400 Prunus persica HOM05D005011 ORTHO05D006443 1.9e-14 82.0 63 60.3
MD12G1120200 Malus domestica HOM05D005011 ORTHO05D006443 3.2e-14 81.3 63 58.7
RcHm_v2.0_Chr3g0469391 Rosa chinensis HOM05D005011 ORTHO05D006443 3.2e-14 81.3 58 63.8
Duzib106G1740 Durio zibethinus HOM05D005011 ORTHO05D006443 4.2e-14 80.9 66 54.5
Lsat_1_v5_gn_2_108740 Lactuca sativa HOM05D005011 ORTHO05D006443 7.1e-14 80.1 64 59.4
ECA238G1048 Erigeron canadensis HOM05D005011 ORTHO05D006443 1.2e-13 79.3 54 66.7
HanXRQChr07g0195601 Helianthus annuus HOM05D005011 ORTHO05D006443 1.6e-13 79.0 67 59.7
Dinv35745 Davidia involucrata HOM05D005011 ORTHO05D006443 2.1e-13 78.6 55 65.5
Duzib093G0219 Durio zibethinus HOM05D005011 ORTHO05D006443 2.1e-13 78.6 66 54.5
unitig_0.g690 Utricularia gibba HOM05D005011 ORTHO05D006443 2.1e-13 78.6 66 60.6
MD04G1100100 Malus domestica HOM05D005011 ORTHO05D006443 3.5e-13 77.8 63 57.1
Thecc.05G057500 Theobroma cacao HOM05D005011 ORTHO05D006443 3.5e-13 77.8 65 55.4
Cfa017534 Carpinus fangiana HOM05D005011 ORTHO05D006443 4.6e-13 77.4 57 63.2
Haze_20614 Corylus avellana HOM05D005011 ORTHO05D006443 4.6e-13 77.4 57 63.2
AL6G12440 Arabidopsis lyrata HOM05D005011 ORTHO05D006443 7.9e-13 76.6 63 57.1
AT5G03160 Arabidopsis thaliana HOM05D005011 ORTHO05D006443 7.9e-13 76.6 63 57.1
Thhalv10013408m.g Eutrema salsugineum HOM05D005011 ORTHO05D006443 7.9e-13 76.6 63 57.1
Rhsim05G0182800 Rhododendron simsii HOM05D005011 ORTHO05D006443 7.9e-13 76.6 69 58.0
CARHR210200 Cardamine hirsuta HOM05D005011 ORTHO05D006443 1.0e-12 76.3 63 57.1
TAR636G2418 Trochodendron aralioides HOM05D005011 ORTHO05D006443 1.8e-12 75.5 64 54.7
Carub.0006s0195 Capsella rubella HOM05D005011 ORTHO05D006443 2.3e-12 75.1 55 61.8
Gohir.D01G204500 Gossypium hirsutum HOM05D005011 ORTHO05D006443 2.3e-12 75.1 66 53.0
PGR142G0484 Punica granatum HOM05D005011 ORTHO05D006443 2.3e-12 75.1 53 64.2
Aa31LG3G2190 Aethionema arabicum HOM05D005011 ORTHO05D006443 3.0e-12 74.7 65 53.8
CiPaw.09G177600 Carya illinoinensis HOM05D005011 ORTHO05D006443 3.0e-12 74.7 57 57.9
Cc06_g03820 Coffea canephora HOM05D005011 ORTHO05D006443 3.0e-12 74.7 55 65.5
COL.COLO4_27042 Corchorus olitorius HOM05D005011 ORTHO05D006443 3.0e-12 74.7 53 62.3
FvH4_6g15690 Fragaria vesca HOM05D005011 ORTHO05D006443 3.0e-12 74.7 58 62.1
Gohir.A01G215700 Gossypium hirsutum HOM05D005011 ORTHO05D006443 3.0e-12 74.7 66 53.0
Gorai.002G248700 Gossypium raimondii HOM05D005011 ORTHO05D006443 3.0e-12 74.7 65 53.8
Sp6g39560 Schrenkiella parvula HOM05D005011 ORTHO05D006443 3.0e-12 74.7 63 54.0
TWI53G1318 Tripterygium wilfordii HOM05D005011 ORTHO05D006443 3.0e-12 74.7 57 63.2
TWI74G0245 Tripterygium wilfordii HOM05D005011 ORTHO05D006443 3.0e-12 74.7 56 64.3
GSVIVG01025659001 Vitis vinifera HOM05D005011 ORTHO05D006443 3.0e-12 74.7 55 63.6
FAN02G2869 Fragaria x ananassa HOM05D005011 ORTHO05D006443 5.1e-12 73.9 58 60.3
SalBow5G1413 Salvia bowleyana HOM05D005011 ORTHO05D006443 5.1e-12 73.9 65 50.8
Atru.chr8.1881 Acer truncatum HOM05D005011 ORTHO05D006443 6.7e-12 73.6 54 61.1
Cpa.g.sc45.60 Carica papaya HOM05D005011 ORTHO05D006443 6.7e-12 73.6 57 57.9
DCAR_020841 Daucus carota HOM05D005011 ORTHO05D006443 6.7e-12 73.6 60 55.0
FAN09G2426 Fragaria x ananassa HOM05D005011 ORTHO05D006443 8.7e-12 73.2 58 58.6
QL07p044722 Quercus lobata HOM05D005011 ORTHO05D006443 1.5e-11 72.4 57 57.9
Hund20209 Selenicereus undatus HOM05D005011 ORTHO05D006443 1.5e-11 72.4 55 60.0
A10p32770 Brassica napus HOM05D005011 ORTHO05D006443 1.9e-11 72.0 63 55.6
BraA10t45311Z Brassica rapa HOM05D005011 ORTHO05D006443 1.9e-11 72.0 63 55.6
Gohir.A09G150600 Gossypium hirsutum HOM05D005011 ORTHO05D006443 1.9e-11 72.0 66 53.0
Aa31LG1G21920 Aethionema arabicum HOM05D005011 ORTHO05D006443 2.5e-11 71.6 55 58.2
C09p73640 Brassica napus HOM05D005011 ORTHO05D006443 2.5e-11 71.6 63 55.6
Ciclev10011610m.g Citrus clementina HOM05D005011 ORTHO05D006443 2.5e-11 71.6 62 54.8
Sabra16G0094100 Salix brachista HOM05D005011 ORTHO05D006443 4.3e-11 70.9 62 54.8
Sed0021094 Sechium edule HOM05D005011 ORTHO05D006443 4.3e-11 70.9 57 57.9
BcaC06g32036 Brassica carinata HOM05D005011 ORTHO05D006443 5.6e-11 70.5 63 54.0
BolC9t60094H Brassica oleracea HOM05D005011 ORTHO05D006443 5.6e-11 70.5 63 54.0
Glyma.03G179800 Glycine max HOM05D005011 ORTHO05D006443 7.4e-11 70.1 56 58.9
Manes.08G005800 Manihot esculenta HOM05D005011 ORTHO05D006443 9.6e-11 69.7 58 55.2
Nn2g13067 Nelumbo nucifera HOM05D005011 ORTHO05D006443 1.6e-10 68.9 57 56.1
MELO3C014249.2 Cucumis melo HOM05D005011 ORTHO05D006443 2.1e-10 68.6 66 50.0
Glyma.19G180600 Glycine max HOM05D005011 ORTHO05D006443 2.1e-10 68.6 56 58.9
THA.LOC104816331 Tarenaya hassleriana HOM05D005011 ORTHO05D006443 2.8e-10 68.2 64 48.4
ClCG04G008930 Citrullus lanatus HOM05D005011 ORTHO05D006443 3.7e-10 67.8 52 61.5
FAN05G4704 Fragaria x ananassa HOM05D005011 ORTHO05D006443 4.8e-10 67.4 65 53.8
CsaV3_6G039440 Cucumis sativus L. HOM05D005011 ORTHO05D006443 6.2e-10 67.0 66 48.5
EL10Ac7g16537 Beta vulgaris HOM05D005011 ORTHO05D006443 1.4e-09 65.9 56 55.4
CARHR084180 Cardamine hirsuta HOM05D005011 ORTHO05D006443 1.8e-09 65.5 52 57.7
Potri.016G088600 Populus trichocarpa HOM05D005011 ORTHO05D006443 1.8e-09 65.5 62 51.6
Phvul.001G176300 Phaseolus vulgaris HOM05D005011 ORTHO05D006443 2.4e-09 65.1 56 57.1
Eucgr.K03238 Eucalyptus grandis HOM05D005011 ORTHO05D006443 6.9e-09 63.5 53 56.6
arahy.Tifrunner.gnm1.ann1.BXCF5W Arachis hypogaea HOM05D005011 ORTHO05D006443 1.2e-08 62.8 54 55.6
arahy.Tifrunner.gnm1.ann1.P0ZPTX Arachis hypogaea HOM05D005011 ORTHO05D006443 1.2e-08 62.8 54 55.6
CANSAT80G2737 Cannabis sativa HOM05D005011 ORTHO05D006443 1.2e-08 62.8 55 56.4
Sc20g0005180 Simmondsia chinensis HOM05D005011 ORTHO05D006443 1.2e-08 62.8 50 56.0
CSS0031764 Camellia sinensis var. sinensis HOM05D005011 ORTHO05D006443 1.5e-08 62.4 56 60.7
CSS0037236 Camellia sinensis var. sinensis HOM05D005011 ORTHO05D006443 1.5e-08 62.4 56 60.7
Manes.09G069500 Manihot esculenta HOM05D005011 ORTHO05D006443 2.0e-08 62.0 55 56.4
Lalb_Chr01g0018931 Lupinus albus HOM05D005011 ORTHO05D006443 2.6e-08 61.6 61 50.8
Sed0004997 Sechium edule HOM05D005011 ORTHO05D006443 3.4e-08 61.2 57 52.6
Lj1g0002210 Lotus japonicus HOM05D005011 ORTHO05D006443 4.5e-08 60.8 49 59.2
VMungo1383G1126 Vigna mungo HOM05D005011 ORTHO05D006443 7.6e-08 60.1 56 55.4
Lalb_Chr20g0112801 Lupinus albus HOM05D005011 ORTHO05D006443 1.0e-07 59.7 49 55.1
Lalb_Chr25g0289171 Lupinus albus HOM05D005011 ORTHO05D006443 1.3e-07 59.3 48 56.2


User provided reference genes

Program Settings