Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g066710.2 Solanum lycopersicum HOM05D000433 ORTHO05D015038 2.4e-63 245.4 124 100.0
Sopen08g020690 Solanum pennellii HOM05D000433 ORTHO05D003991 1.6e-35 152.9 81 96.3
Peaxi162Scf00323g00925 Petunia axillaris HOM05D000433 ORTHO05D003991 2.3e-26 122.5 81 79.0
Nitab4.5_0009835g0010 Nicotiana tabacum HOM05D000433 ORTHO05D003991 1.4e-18 96.7 63 77.8
Peaxi162Scf00323g00934 Petunia axillaris HOM05D000433 ORTHO05D003991 2.3e-18 95.9 81 64.2
CSS0012936 Camellia sinensis var. sinensis HOM05D000433 ORTHO05D003991 4.8e-16 88.2 81 53.1
Nitab4.5_0007838g0050 Nicotiana tabacum HOM05D000433 ORTHO05D003991 3.1e-15 85.5 95 53.7
Potri.006G239402 Populus trichocarpa HOM05D000433 ORTHO05D003991 3.1e-15 85.5 74 59.5
Dinv14259 Davidia involucrata HOM05D000433 ORTHO05D003991 9.1e-15 84.0 81 49.4
Dinv14257 Davidia involucrata HOM05D000433 ORTHO05D003991 1.2e-14 83.6 81 49.4
Hma1.2p1_0774F.1_g216310 Hydrangea macrophylla HOM05D000433 ORTHO05D015038 4.5e-14 81.6 81 49.4
Thecc.09G043800 Theobroma cacao HOM05D000433 ORTHO05D003991 7.7e-14 80.9 83 53.0
PGSC0003DMG400004311 Solanum tuberosum HOM05D000433 ORTHO05D003991 2.2e-13 79.3 72 55.6
DCAR_003121 Daucus carota HOM05D000433 ORTHO05D003991 2.9e-13 79.0 81 46.9
Duzib168G1402 Durio zibethinus HOM05D000433 ORTHO05D003991 5.0e-13 78.2 75 56.0
Thecc.09G044200 Theobroma cacao HOM05D000433 ORTHO05D015038 8.5e-13 77.4 90 48.9
TWI34G1621 Tripterygium wilfordii HOM05D000433 ORTHO05D003991 8.5e-13 77.4 74 55.4
Dinv27895 Davidia involucrata HOM05D000433 ORTHO05D003991 1.1e-12 77.0 81 46.9
Solyc11g071227.1 Solanum lycopersicum HOM05D000433 ORTHO05D003991 1.5e-12 76.6 82 52.4
Actinidia30273 Actinidia chinensis HOM05D000433 ORTHO05D003991 2.5e-12 75.9 82 47.6
TWI34G1265 Tripterygium wilfordii HOM05D000433 ORTHO05D003991 4.2e-12 75.1 74 54.1
PGSC0003DMG400004312 Solanum tuberosum HOM05D000433 ORTHO05D003991 9.4e-12 73.9 72 52.8
TAR383G1023 Trochodendron aralioides HOM05D000433 ORTHO05D003991 9.4e-12 73.9 81 46.9
Atru.chr7.2110 Acer truncatum HOM05D000433 ORTHO05D003991 1.6e-11 73.2 81 49.4
CSS0016926 Camellia sinensis var. sinensis HOM05D000433 ORTHO05D003991 2.1e-11 72.8 81 42.0
Potri.006G239200 Populus trichocarpa HOM05D000433 ORTHO05D003991 3.6e-11 72.0 91 42.9
Potri.018G042650 Populus trichocarpa HOM05D000433 ORTHO05D003991 3.6e-11 72.0 80 46.2
Gohir.1Z049422 Gossypium hirsutum HOM05D000433 ORTHO05D003991 2.3e-10 69.3 84 45.2
Gohir.A06G093600 Gossypium hirsutum HOM05D000433 ORTHO05D003991 2.3e-10 69.3 84 45.2
Potri.018G043500 Populus trichocarpa HOM05D000433 ORTHO05D003991 2.3e-10 69.3 73 45.2
Gohir.D06G093300 Gossypium hirsutum HOM05D000433 ORTHO05D003991 3.0e-10 68.9 84 44.0
Prupe.1G449300 Prunus persica HOM05D000433 ORTHO05D003991 3.0e-10 68.9 83 48.2
Atru.chr7.2097 Acer truncatum HOM05D000433 ORTHO05D003991 5.2e-10 68.2 81 43.2
COL.COLO4_18651 Corchorus olitorius HOM05D000433 ORTHO05D003991 5.2e-10 68.2 74 52.7
Migut.A00213 Erythranthe guttata HOM05D000433 ORTHO05D003991 5.2e-10 68.2 85 44.7
Gorai.010G107700 Gossypium raimondii HOM05D000433 ORTHO05D003991 6.8e-10 67.8 84 44.0
Ciclev10010551m.g Citrus clementina HOM05D000433 ORTHO05D003991 1.2e-09 67.0 73 45.2
CAN.G335.8 Capsicum annuum HOM05D000433 ORTHO05D003991 2.0e-09 66.2 48 66.7
Eucgr.C02921 Eucalyptus grandis HOM05D000433 ORTHO05D003991 2.0e-09 66.2 73 43.8
PSO210G3307 Papaver somniferum HOM05D000433 ORTHO05D003991 4.4e-09 65.1 82 39.0
Sabra06G0187000 Salix brachista HOM05D000433 ORTHO05D003991 5.7e-09 64.7 90 40.0
GSVIVG01035633001 Vitis vinifera HOM05D000433 ORTHO05D003991 5.7e-09 64.7 81 45.7
Dinv38696 Davidia involucrata HOM05D000433 ORTHO05D015038 7.5e-09 64.3 60 51.7
Prupe.1G449200 Prunus persica HOM05D000433 ORTHO05D003991 1.3e-08 63.5 83 44.6
Oeu036367.1 Olea europaea HOM05D000433 ORTHO05D003991 1.7e-08 63.2 92 42.4
MD15G1094300 Malus domestica HOM05D000433 ORTHO05D003991 2.8e-08 62.4 73 45.2
HanXRQChr13g0401881 Helianthus annuus HOM05D000433 ORTHO05D003991 3.7e-08 62.0 83 43.4
Manes.16G076200 Manihot esculenta HOM05D000433 ORTHO05D003991 3.7e-08 62.0 76 48.7
Lj7C703T4 Lonicera japonica HOM05D000433 ORTHO05D003991 4.9e-08 61.6 33 81.8
TWI34G0034 Tripterygium wilfordii HOM05D000433 ORTHO05D003991 4.9e-08 61.6 75 50.7
Atru.chr7.2096 Acer truncatum HOM05D000433 ORTHO05D003991 6.3e-08 61.2 81 44.4
CAN.G792.2 Capsicum annuum HOM05D000433 ORTHO05D003991 6.3e-08 61.2 46 60.9
Gohir.D05G048950 Gossypium hirsutum HOM05D000433 ORTHO05D015038 6.3e-08 61.2 81 43.2
Gohir.A05G047200 Gossypium hirsutum HOM05D000433 ORTHO05D003991 1.1e-07 60.5 78 43.6
Gorai.009G050300 Gossypium raimondii HOM05D000433 ORTHO05D003991 1.1e-07 60.5 78 43.6
Sabra18G0043600 Salix brachista HOM05D000433 ORTHO05D003991 1.1e-07 60.5 73 41.1
GSVIVG01035636001 Vitis vinifera HOM05D000433 ORTHO05D003991 1.1e-07 60.5 43 65.1
TWI34G0984 Tripterygium wilfordii HOM05D000433 ORTHO05D003991 1.4e-07 60.1 73 45.2
Sabra18G0043500 Salix brachista HOM05D000433 ORTHO05D003991 1.8e-07 59.7 73 41.1
CSS0015925 Camellia sinensis var. sinensis HOM05D000433 ORTHO05D003991 2.4e-07 59.3 74 41.9
CAN.G792.3 Capsicum annuum HOM05D002518 ORTHO05D015038 2.4e-07 59.3 34 82.4
Potri.006G239300 Populus trichocarpa HOM05D000433 ORTHO05D003991 3.1e-07 58.9 91 38.5
Phvul.009G109200 Phaseolus vulgaris HOM05D000433 ORTHO05D003991 4.1e-07 58.5 76 44.7
Cc08_g09430 Coffea canephora HOM05D000433 ORTHO05D003991 7.0e-07 57.8 89 41.6
TAR383G0708 Trochodendron aralioides HOM05D000433 ORTHO05D003991 7.0e-07 57.8 46 56.5
GSVIVG01035632001 Vitis vinifera HOM05D000433 ORTHO05D003991 7.0e-07 57.8 82 40.2
FAN20G2606 Fragaria x ananassa HOM05D000433 ORTHO05D003991 9.2e-07 57.4 83 45.8
CAN.G309.89 Capsicum annuum HOM05D000433 ORTHO05D003991 1.2e-06 57.0 33 78.8
Gohir.D05G049100 Gossypium hirsutum HOM05D000433 ORTHO05D003991 1.6e-06 56.6 53 60.4
Manes.03G057750 Manihot esculenta HOM05D000433 ORTHO05D003991 1.6e-06 56.6 61 42.6
Peaxi162Scf00227g00007 Petunia axillaris HOM05D000433 ORTHO05D003991 1.6e-06 56.6 38 76.3
PGR044G1800 Punica granatum HOM05D000433 ORTHO05D003991 1.6e-06 56.6 82 45.1
Haze_16805 Corylus avellana HOM05D000433 ORTHO05D003991 2.0e-06 56.2 69 42.0
Sabra18G0043100 Salix brachista HOM05D000433 ORTHO05D003991 2.0e-06 56.2 81 39.5
FvH4_2g35670 Fragaria vesca HOM05D000433 ORTHO05D003991 2.7e-06 55.8 71 47.9
CSS0045124 Camellia sinensis var. sinensis HOM05D000433 ORTHO05D003991 3.5e-06 55.5 48 45.8
TPR.G1382 Trifolium pratense HOM05D000433 ORTHO05D003991 3.5e-06 55.5 76 44.7
ECA246G2703 Erigeron canadensis HOM05D000433 ORTHO05D003991 4.5e-06 55.1 74 36.5
FAN20G2984 Fragaria x ananassa HOM05D000433 ORTHO05D003991 5.9e-06 54.7 58 51.7
VMungo1309G2807 Vigna mungo HOM05D000433 ORTHO05D003991 5.9e-06 54.7 73 42.5
ECA233G3103 Erigeron canadensis HOM05D000433 ORTHO05D003991 7.7e-06 54.3 72 41.7
FvH4_2g35680 Fragaria vesca HOM05D000433 ORTHO05D003991 7.7e-06 54.3 57 50.9
Glyma.06G085100 Glycine max HOM05D000433 ORTHO05D003991 7.7e-06 54.3 84 44.0


User provided reference genes

Program Settings