Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g066030.3 Solanum lycopersicum HOM05D005768 ORTHO05D007100 2.3e-108 395.6 204 100.0
Sopen08g019690 Solanum pennellii HOM05D005768 ORTHO05D007100 9.2e-105 383.6 204 97.5
PGSC0003DMG401025462 Solanum tuberosum HOM05D005768 ORTHO05D007100 2.0e-91 339.3 175 98.3
Peaxi162Scf00699g00655 Petunia axillaris HOM05D005768 ORTHO05D007100 6.2e-77 291.2 163 91.4
Nitab4.5_0000318g0060 Nicotiana tabacum HOM05D005768 ORTHO05D007100 1.4e-73 280.0 161 89.4
Nitab4.5_0002021g0070 Nicotiana tabacum HOM05D005768 ORTHO05D007100 9.9e-67 257.3 155 85.2
Ciclev10022280m.g Citrus clementina HOM05D005768 ORTHO05D007100 5.3e-60 235.0 193 63.2
Migut.A00171 Erythranthe guttata HOM05D005768 ORTHO05D007100 6.9e-60 234.6 200 61.5
Cc00_g09250 Coffea canephora HOM05D005768 ORTHO05D007100 1.5e-59 233.4 181 64.1
CSS0002565 Camellia sinensis var. sinensis HOM05D005768 ORTHO05D007100 1.3e-58 230.3 206 59.7
Atru.chr4.1221 Acer truncatum HOM05D005768 ORTHO05D007100 2.9e-58 229.2 193 63.2
Atru.chr7.2675 Acer truncatum HOM05D005768 ORTHO05D007100 1.9e-57 226.5 193 63.7
Dinv27944 Davidia involucrata HOM05D005768 ORTHO05D007100 4.2e-57 225.3 200 59.0
Aqoxy5G03966 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 7.9e-56 221.1 200 57.5
Manes.02G043100 Manihot esculenta HOM05D005768 ORTHO05D007100 1.0e-55 220.7 193 59.6
SalBow6G5216 Salvia bowleyana HOM05D005768 ORTHO05D007100 1.3e-55 220.3 177 63.3
THA.LOC104812009 Tarenaya hassleriana HOM05D005768 ORTHO05D007100 1.3e-55 220.3 196 58.7
Cpa.g.sc1868.1 Carica papaya HOM05D005768 ORTHO05D007100 5.1e-55 218.4 200 58.5
vmacro07473 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 1.9e-54 216.5 200 59.0
Gohir.D07G024000 Gossypium hirsutum HOM05D005768 ORTHO05D007100 3.3e-54 215.7 181 63.5
GSVIVG01035325001 Vitis vinifera HOM05D005768 ORTHO05D007100 4.3e-54 215.3 193 59.6
Actinidia18208 Actinidia chinensis HOM05D005768 ORTHO05D007100 7.4e-54 214.5 200 59.0
COL.COLO4_21009 Corchorus olitorius HOM05D005768 ORTHO05D007100 7.4e-54 214.5 175 64.6
Gorai.001G024700 Gossypium raimondii HOM05D005768 ORTHO05D007100 7.4e-54 214.5 175 64.6
Thecc.09G049100 Theobroma cacao HOM05D005768 ORTHO05D007100 2.1e-53 213.0 175 63.4
Duzib168G0475 Durio zibethinus HOM05D005768 ORTHO05D007100 3.7e-53 212.2 175 62.9
RcHm_v2.0_Chr6g0306801 Rosa chinensis HOM05D005768 ORTHO05D007100 3.7e-53 212.2 203 57.1
TWI63G1351 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 4.8e-53 211.8 168 63.1
Eucgr.C02988 Eucalyptus grandis HOM05D005768 ORTHO05D007100 8.1e-53 211.1 199 58.8
Potri.006G234800 Populus trichocarpa HOM05D005768 ORTHO05D007100 8.1e-53 211.1 184 61.4
Ah.02g116310 Amaranthus hybridus HOM05D005768 ORTHO05D007100 1.8e-52 209.9 184 60.9
CiPaw.07G201500 Carya illinoinensis HOM05D005768 ORTHO05D007100 2.4e-52 209.5 192 60.9
CANSAT56G2391 Cannabis sativa HOM05D005768 ORTHO05D007100 5.3e-52 208.4 176 60.8
Rhsim07G0145000 Rhododendron simsii HOM05D005768 ORTHO05D007100 6.9e-52 208.0 194 58.2
FAN20G2834 Fragaria x ananassa HOM05D005768 ORTHO05D007100 9.0e-52 207.6 203 55.7
SGA_v2.0_scaffold103G30048 Striga asiatica HOM05D005768 ORTHO05D007100 1.2e-51 207.2 167 62.3
TAR383G0888 Trochodendron aralioides HOM05D005768 ORTHO05D007100 1.2e-51 207.2 174 62.1
FAN27G1715 Fragaria x ananassa HOM05D005768 ORTHO05D007100 2.6e-51 206.1 203 55.7
TAR624G0371 Trochodendron aralioides HOM05D005768 ORTHO05D007100 2.6e-51 206.1 189 58.7
MD08G1109000 Malus domestica HOM05D005768 ORTHO05D007100 3.4e-51 205.7 208 56.7
Sabra06G0183200 Salix brachista HOM05D005768 ORTHO05D007100 3.4e-51 205.7 209 55.5
Hma1.2p1_0442F.1_g153950 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 5.8e-51 204.9 193 56.0
Prupe.1G443600 Prunus persica HOM05D005768 ORTHO05D007100 2.2e-50 203.0 202 56.4
PSO063G0290 Papaver somniferum HOM05D005768 ORTHO05D007100 2.9e-50 202.6 191 57.1
EL10Ac5g12654 Beta vulgaris HOM05D005768 ORTHO05D007100 3.8e-50 202.2 197 56.3
HanXRQChr03g0078001 Helianthus annuus HOM05D005768 ORTHO05D007100 3.8e-50 202.2 185 58.9
Hma1.2p1_0603F.1_g187720 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 6.5e-50 201.4 168 60.7
TWI34G0524 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 1.1e-49 200.7 174 58.6
Lalb_Chr24g0397251 Lupinus albus HOM05D005768 ORTHO05D007100 1.9e-49 199.9 193 55.4
PSO832G1534 Papaver somniferum HOM05D005768 ORTHO05D007100 1.9e-49 199.9 180 57.8
MSTRG.25924 Avicennia marina HOM05D005768 ORTHO05D007100 4.2e-49 198.7 199 54.3
AT1G20890 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 5.5e-49 198.4 187 59.9
Aqoxy7G01356 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 9.3e-49 197.6 179 56.4
AL1G33910 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 1.2e-48 197.2 186 60.2
AUR62017359 Chenopodium quinoa HOM05D005768 ORTHO05D007100 1.2e-48 197.2 185 56.2
Sc09g0009490 Simmondsia chinensis HOM05D005768 ORTHO05D007100 1.6e-48 196.8 212 52.8
PSO832G3354 Papaver somniferum HOM05D005768 ORTHO05D007100 2.7e-48 196.1 191 55.0
Sp1g18590 Schrenkiella parvula HOM05D005768 ORTHO05D007100 2.7e-48 196.1 185 57.8
CARHR021320 Cardamine hirsuta HOM05D005768 ORTHO05D007100 6.0e-48 194.9 187 57.8
Aa31LG7G5050 Aethionema arabicum HOM05D005768 ORTHO05D007100 7.9e-48 194.5 189 54.0
PSO063G1479 Papaver somniferum HOM05D005768 ORTHO05D007100 7.9e-48 194.5 179 58.7
PSO063G2632 Papaver somniferum HOM05D005768 ORTHO05D007100 7.9e-48 194.5 179 58.7
PSO063G5891 Papaver somniferum HOM05D005768 ORTHO05D007100 7.9e-48 194.5 179 58.7
MELO3C003477.2 Cucumis melo HOM05D005768 ORTHO05D007100 1.0e-47 194.1 195 53.3
Lsat_1_v5_gn_3_56860 Lactuca sativa HOM05D005768 ORTHO05D007100 1.8e-47 193.4 158 62.0
PGR044G0118 Punica granatum HOM05D005768 ORTHO05D007100 1.8e-47 193.4 162 58.6
AT1G76480 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 2.3e-47 193.0 194 54.6
Thhalv10008823m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 5.1e-47 191.8 190 56.3
Sed0022019 Sechium edule HOM05D005768 ORTHO05D007100 6.7e-47 191.4 178 58.4
Nn6g34840 Nelumbo nucifera HOM05D005768 ORTHO05D007100 1.1e-46 190.7 171 59.6
arahy.Tifrunner.gnm1.ann1.FJ9VJT Arachis hypogaea HOM05D005768 ORTHO05D007100 1.9e-46 189.9 190 55.3
AUR62010536 Chenopodium quinoa HOM05D005768 ORTHO05D007100 2.5e-46 189.5 165 57.6
CsaV3_3G048420 Cucumis sativus L. HOM05D005768 ORTHO05D007100 2.5e-46 189.5 193 52.8
Glyma.19G233100 Glycine max HOM05D005768 ORTHO05D007100 2.5e-46 189.5 204 51.0
TPR.G33208 Trifolium pratense HOM05D005768 ORTHO05D007100 4.3e-46 188.7 181 54.1
Sed0000338 Sechium edule HOM05D005768 ORTHO05D007100 7.4e-46 188.0 181 55.2
Lj1g0020400 Lotus japonicus HOM05D005768 ORTHO05D007100 1.3e-45 187.2 203 52.2
Medtr7g112710 Medicago truncatula HOM05D005768 ORTHO05D007100 1.3e-45 187.2 167 58.7
QL12p040865 Quercus lobata HOM05D005768 ORTHO05D007100 1.6e-45 186.8 274 43.1
BcaB07g32084 Brassica carinata HOM05D005768 ORTHO05D007100 2.8e-45 186.0 182 58.2
Phvul.006G089400 Phaseolus vulgaris HOM05D005768 ORTHO05D007100 2.8e-45 186.0 204 51.0
Psat0s1830g0160 Pisum sativum HOM05D005768 ORTHO05D007100 2.8e-45 186.0 184 54.3
BcaB03g14295 Brassica carinata HOM05D005768 ORTHO05D007100 4.8e-45 185.3 186 54.8
Haze_01966 Corylus avellana HOM05D005768 ORTHO05D007100 6.3e-45 184.9 156 61.5
Carub.0001s2036 Capsella rubella HOM05D005768 ORTHO05D007100 1.8e-44 183.3 188 53.7
A07p15420 Brassica napus HOM05D005768 ORTHO05D007100 3.1e-44 182.6 185 55.7
Psat0s1830g0280 Pisum sativum HOM05D005768 ORTHO05D007100 3.1e-44 182.6 193 52.8
TPR.G29192 Trifolium pratense HOM05D005768 ORTHO05D007100 3.1e-44 182.6 167 56.9
Gohir.A07G022184 Gossypium hirsutum HOM05D005768 ORTHO05D007100 5.3e-44 181.8 138 67.4
BcaC06g34845 Brassica carinata HOM05D005768 ORTHO05D007100 1.2e-43 180.6 179 57.0
vmacro05269 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 1.5e-43 180.3 178 56.2
Lalb_Chr08g0242881 Lupinus albus HOM05D005768 ORTHO05D007100 2.6e-43 179.5 179 51.4
ECA234G0765 Erigeron canadensis HOM05D000185 ORTHO05D000105 1.9e-41 173.3 173 56.1
FAN15G1520 Fragaria x ananassa HOM05D005768 ORTHO05D007100 5.5e-41 171.8 159 56.6
SEGI_27706 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 1.6e-40 170.2 158 54.4
unitig_0.g2567 Utricularia gibba HOM05D005768 ORTHO05D007100 2.7e-40 169.5 158 57.0
SalBow4G3076 Salvia bowleyana HOM05D005768 ORTHO05D007100 3.6e-40 169.1 190 49.5
Os08g0374900 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 1.5e-38 163.7 197 48.7
Os03g0804100 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 1.3e-37 160.6 176 50.0
Lj7A696G17 Lonicera japonica HOM05D005768 ORTHO05D007100 1.1e-36 157.5 196 48.0
Zm00001eb061390 Zea mays HOM05D005768 ORTHO05D007100 2.4e-36 156.4 203 44.3
ATR0693G003 Amborella trichopoda HOM05D005768 ORTHO05D007100 3.1e-36 156.0 162 51.9
PSO832G4156 Papaver somniferum HOM05D005768 ORTHO05D007100 5.3e-36 155.2 146 56.8
AL2G36620 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 1.5e-35 153.7 179 51.4
Oeu033885.1 Olea europaea HOM05D005768 ORTHO05D007100 1.7e-34 150.2 120 63.3
A06p16890 Brassica napus HOM05D005768 ORTHO05D007100 4.2e-33 145.6 195 48.2
Hund19578 Selenicereus undatus HOM05D005768 ORTHO05D007100 2.7e-32 142.9 120 63.3
PSO063G4631 Papaver somniferum HOM05D005768 ORTHO05D007100 1.0e-31 141.0 149 53.0
BraA06t24798Z Brassica rapa HOM05D005768 ORTHO05D007100 6.7e-31 138.3 185 46.5
BolC7t42805H Brassica oleracea HOM05D005768 ORTHO05D007100 8.8e-31 137.9 139 54.7
C07p22730 Brassica napus HOM05D005768 ORTHO05D007100 9.7e-30 134.4 141 54.6
C05p19520 Brassica napus HOM05D005768 ORTHO05D007100 4.8e-29 132.1 192 45.8
BolC5t30654H Brassica oleracea HOM05D005768 ORTHO05D007100 4.8e-29 132.1 192 45.8
ClCG02G014210 Citrullus lanatus HOM05D005768 ORTHO05D007100 3.8e-26 122.5 126 52.4
Ca_05797_v3 Cicer arietinum L. HOM05D001134 ORTHO05D001035 6.5e-26 121.7 123 53.7
Mapoly0062s0068 Marchantia polymorpha HOM05D005768 ORTHO05D007100 1.1e-25 120.9 172 44.8
Pp3c24_1520 Physcomitrium patens HOM05D005768 ORTHO05D007100 7.2e-25 118.2 186 41.4
Sc09g0009510 Simmondsia chinensis HOM05D005768 ORTHO05D007100 7.2e-25 118.2 91 61.5
MBI02_g46987_MAGBIO Magnolia biondii HOM05D005768 ORTHO05D007100 1.2e-24 117.5 98 59.2
Thhalv10019630m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 2.1e-24 116.7 154 46.1
Glyma.03G235400 Glycine max HOM05D005768 ORTHO05D007100 2.1e-24 116.7 134 50.0
HPP92_009604 Vanilla planifolia HOM05D005768 ORTHO05D007100 3.3e-22 109.4 111 55.9
CDE02G0943 Ceratophyllum demersum HOM05D005768 ORTHO05D007100 1.3e-21 107.5 95 58.9
MBI02_g46884_MAGBIO Magnolia biondii HOM05D000614 ORTHO05D007100 3.7e-21 105.9 119 47.9
FvH4_2g35150 Fragaria vesca HOM05D005768 ORTHO05D007100 4.1e-20 102.4 111 49.5
HanXRQChr14g0439211 Helianthus annuus HOM05D005768 ORTHO05D007100 2.2e-13 80.1 79 54.4
Oeu002722.1 Olea europaea HOM05D005768 ORTHO05D007100 1.1e-12 77.8 66 60.6
DCAR_003074 Daucus carota HOM05D001613 ORTHO05D001556 5.3e-12 75.5 74 52.7
CBR_g130 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-09 67.4 95 36.8
SEGI_03586 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 3.6e-08 62.8 44 61.4
BcaC05g25998 Brassica carinata HOM05D005768 ORTHO05D007100 1.4e-07 60.8 59 49.2
Cre12.g547734 Chlamydomonas reinhardtii HOM05D005768 ORTHO05D007100 1.8e-07 60.5 159 30.2
C02p33000 Brassica napus HOM05D005768 ORTHO05D041760 7.5e-06 55.1 42 61.9
BolC2t09396H Brassica oleracea HOM05D005768 ORTHO05D041760 7.5e-06 55.1 42 61.9


User provided reference genes

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