Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g066010.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 0.0e+00 3022.3 1530 100.0
Sopen08g019670 Solanum pennellii HOM05D006132 ORTHO05D007305 0.0e+00 2933.3 1507 98.6
CAN.G9.6 Capsicum annuum HOM05D006132 ORTHO05D007305 0.0e+00 2667.9 1506 89.7
Nitab4.5_0000318g0080 Nicotiana tabacum HOM05D006132 ORTHO05D007305 0.0e+00 2289.2 1507 78.7
Dinv23402 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 1884.0 1543 64.4
Cc08_g10020 Coffea canephora HOM05D006132 ORTHO05D007305 0.0e+00 1817.7 1537 63.0
Lj8C561G12 Lonicera japonica HOM05D006132 ORTHO05D007305 0.0e+00 1807.7 1543 62.5
QL12p040855 Quercus lobata HOM05D006132 ORTHO05D007305 0.0e+00 1793.9 1544 61.7
CiPaw.07G201400 Carya illinoinensis HOM05D006132 ORTHO05D007305 0.0e+00 1772.3 1544 61.0
Dinv02537 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 1765.7 1473 63.9
GSVIVG01035326001 Vitis vinifera HOM05D006132 ORTHO05D007305 0.0e+00 1752.3 1548 60.6
MSTRG.25925 Avicennia marina HOM05D006132 ORTHO05D007305 0.0e+00 1738.4 1537 60.5
vmacro00180 Vaccinium macrocarpon HOM05D006132 ORTHO05D007305 0.0e+00 1738.0 1571 60.5
Haze_01967 Corylus avellana HOM05D006132 ORTHO05D007305 0.0e+00 1731.1 1550 60.1
Thecc.09G049200 Theobroma cacao HOM05D006132 ORTHO05D007305 0.0e+00 1730.7 1556 59.7
COL.COLO4_21010 Corchorus olitorius HOM05D006132 ORTHO05D007305 0.0e+00 1705.6 1554 59.8
TAR636G1718 Trochodendron aralioides HOM05D006132 ORTHO05D007305 0.0e+00 1703.3 1623 57.0
Migut.A00170 Erythranthe guttata HOM05D006132 ORTHO05D007305 0.0e+00 1695.2 1535 59.7
Prupe.1G443500 Prunus persica HOM05D006132 ORTHO05D007305 0.0e+00 1689.1 1540 59.5
Nn8g39007 Nelumbo nucifera HOM05D006132 ORTHO05D007305 0.0e+00 1686.8 1618 56.4
Manes.03G057600 Manihot esculenta HOM05D006132 ORTHO05D007305 0.0e+00 1684.5 1548 59.1
Atru.chr7.2044 Acer truncatum HOM05D006132 ORTHO05D007305 0.0e+00 1681.4 1552 58.2
FvH4_2g35140 Fragaria vesca HOM05D006132 ORTHO05D007305 0.0e+00 1676.0 1541 59.0
Potri.018G057900 Populus trichocarpa HOM05D006132 ORTHO05D007305 0.0e+00 1667.9 1548 58.3
Gorai.001G024600 Gossypium raimondii HOM05D006132 ORTHO05D007305 0.0e+00 1666.7 1551 58.2
TWI34G0160 Tripterygium wilfordii HOM05D006132 ORTHO05D007305 0.0e+00 1664.4 1536 58.1
RcHm_v2.0_Chr6g0306811 Rosa chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1661.7 1550 58.6
Ciclev10010526m.g Citrus clementina HOM05D006132 ORTHO05D007305 0.0e+00 1656.0 1542 58.4
MD08G1108900 Malus domestica HOM05D006132 ORTHO05D007305 0.0e+00 1654.8 1558 58.0
Sed0028022 Sechium edule HOM05D006132 ORTHO05D007305 0.0e+00 1642.1 1544 57.4
MELO3C003478.2 Cucumis melo HOM05D006132 ORTHO05D007305 0.0e+00 1640.9 1537 58.4
Duzib168G1248 Durio zibethinus HOM05D006132 ORTHO05D007305 0.0e+00 1637.9 1553 57.7
Sc09g0009530 Simmondsia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1637.1 1548 57.2
Glyma.04G087200 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 1632.1 1541 57.6
CsaV3_3G048410 Cucumis sativus L. HOM05D006132 ORTHO05D007305 0.0e+00 1626.3 1543 57.9
Ca_15565_v3 Cicer arietinum L. HOM05D006132 ORTHO05D007305 0.0e+00 1623.6 1545 57.3
Lalb_Chr08g0242871 Lupinus albus HOM05D006132 ORTHO05D007305 0.0e+00 1619.0 1551 57.4
Glyma.06G088900 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 1613.2 1543 57.4
Oeu038827.1 Olea europaea HOM05D006132 ORTHO05D007305 0.0e+00 1602.8 1533 57.2
SalBow4G1475 Salvia bowleyana HOM05D006132 ORTHO05D007305 0.0e+00 1601.6 1498 58.2
Lj1g0008631 Lotus japonicus HOM05D006132 ORTHO05D007305 0.0e+00 1600.5 1543 56.6
TPR.G12374 Trifolium pratense HOM05D006132 ORTHO05D007305 0.0e+00 1598.9 1545 56.6
Gohir.D07G023900 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 1598.2 1559 56.8
Lsat_1_v5_gn_3_109020 Lactuca sativa HOM05D006132 ORTHO05D007305 0.0e+00 1597.4 1522 57.2
VMungo1309G3161 Vigna mungo HOM05D006132 ORTHO05D007305 0.0e+00 1596.3 1542 56.7
PGR031G1631 Punica granatum HOM05D006132 ORTHO05D007305 0.0e+00 1591.6 1538 56.0
Aqoxy7G03955 Aquilegia oxysepala HOM05D006132 ORTHO05D007305 0.0e+00 1583.9 1612 54.4
Medtr3g110417 Medicago truncatula HOM05D006132 ORTHO05D007305 0.0e+00 1581.6 1549 56.2
AUR62040212 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 1580.8 1549 55.4
ClCG11G015000 Citrullus lanatus HOM05D006132 ORTHO05D007305 0.0e+00 1580.8 1570 56.2
Phvul.009G112700 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1580.5 1529 56.6
ECA240G1625 Erigeron canadensis HOM05D006132 ORTHO05D007305 0.0e+00 1577.0 1527 56.3
HanXRQChr03g0077991 Helianthus annuus HOM05D006132 ORTHO05D007305 0.0e+00 1574.7 1523 56.9
Psat0s3156g0040 Pisum sativum HOM05D006132 ORTHO05D007305 0.0e+00 1566.6 1543 55.5
Actinidia01213 Actinidia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1564.7 1530 57.1
PSO210G7354 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1554.3 1604 53.9
AUR62009214 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 1553.9 1552 55.4
arahy.Tifrunner.gnm1.ann1.GM174E Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 1553.1 1643 53.3
PSO210G2191 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1552.7 1593 53.9
MBI01_g01249_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 0.0e+00 1541.6 1590 52.9
DCAR_007699 Daucus carota HOM05D006132 ORTHO05D007305 0.0e+00 1540.4 1583 54.7
Ah.11g044450 Amaranthus hybridus HOM05D006132 ORTHO05D007305 0.0e+00 1521.5 1529 54.0
SGA_v2.0_scaffold103G30057 Striga asiatica HOM05D006132 ORTHO05D007305 0.0e+00 1516.5 1557 55.8
AT4G32820 Arabidopsis thaliana HOM05D006132 ORTHO05D007305 0.0e+00 1513.0 1534 52.9
THA.LOC104818581 Tarenaya hassleriana HOM05D006132 ORTHO05D007305 0.0e+00 1508.8 1534 54.4
AL7G18910 Arabidopsis lyrata HOM05D006132 ORTHO05D007305 0.0e+00 1502.3 1536 52.7
Rhsim11G0049000 Rhododendron simsii HOM05D006132 ORTHO05D007305 0.0e+00 1498.0 1544 54.5
EL10Ac2g03960 Beta vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1497.3 1684 50.7
Carub.0007s0767 Capsella rubella HOM05D006132 ORTHO05D007305 0.0e+00 1496.5 1535 52.7
Sp7g30590 Schrenkiella parvula HOM05D006132 ORTHO05D007305 0.0e+00 1495.3 1539 52.8
BcaC09g52078 Brassica carinata HOM05D006132 ORTHO05D007305 0.0e+00 1479.9 1535 52.4
Thhalv10026823m.g Eutrema salsugineum HOM05D006132 ORTHO05D007305 0.0e+00 1476.1 1534 52.3
C01p06070 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1475.3 1534 52.3
arahy.Tifrunner.gnm1.ann1.XPLI6K Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 1473.4 1515 54.4
Aa31sc208G40 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1466.4 1537 52.3
Hund19486 Selenicereus undatus HOM05D006132 ORTHO05D007305 0.0e+00 1464.5 1518 53.8
A01p05470 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1458.0 1537 51.1
Aa31LG5G17300 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1457.2 1539 52.1
Gohir.A07G022180 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 1455.3 1420 56.7
BolC1t00600H Brassica oleracea HOM05D006132 ORTHO05D007305 0.0e+00 1446.4 1564 51.3
BraA01t00520Z Brassica rapa HOM05D006132 ORTHO05D007305 0.0e+00 1436.4 1566 50.3
Eucgr.C00619 Eucalyptus grandis HOM05D006132 ORTHO05D007305 0.0e+00 1372.5 1424 53.4
FAN20G0110 Fragaria x ananassa HOM05D006132 ORTHO05D007305 0.0e+00 1371.7 1358 56.2
ATR0815G026 Amborella trichopoda HOM05D006132 ORTHO05D007305 0.0e+00 1367.8 1695 46.5
Nitab4.5_0002021g0060 Nicotiana tabacum HOM05D006132 ORTHO05D007305 0.0e+00 1349.3 1391 56.7
HPP92_019594 Vanilla planifolia HOM05D006132 ORTHO05D007305 0.0e+00 1267.7 1542 47.1
Peaxi162Scf00840g00429 Petunia axillaris HOM05D006132 ORTHO05D007305 0.0e+00 1165.2 803 76.5
unitig_0.g2566 Utricularia gibba HOM05D006132 ORTHO05D007305 0.0e+00 1133.6 1534 45.0
Cpa.g.sc7.235 Carica papaya HOM05D006132 ORTHO05D007305 1.1e-298 1030.8 1262 47.4
SMO365G0056 Selaginella moellendorffii HOM05D006132 ORTHO05D007305 5.0e-272 942.2 1566 37.8
Pp3c4_1880 Physcomitrium patens HOM05D006132 ORTHO05D007305 3.0e-269 932.9 1759 36.2
CSS0000087 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 2.0e-257 893.6 687 68.3
Mapoly0021s0014 Marchantia polymorpha HOM05D006132 ORTHO05D007305 1.1e-255 887.9 1794 33.9
CSS0048337 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 1.5e-239 834.3 644 68.3
AagrBONN_evm.TU.Sc2ySwM_344.875 Anthoceros agrestis HOM05D006132 ORTHO05D007305 1.3e-235 821.2 1710 33.5
CSS0029204 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 9.4e-186 655.6 659 57.7
CBR_g22939 Chara braunii HOM05D006132 ORTHO05D000048 9.4e-186 655.6 1876 30.0
Psat4g077080 Pisum sativum HOM05D006132 ORTHO05D007305 4.8e-182 643.3 757 50.2
SHI18802 Sapria himalayana HOM05D006132 ORTHO05D007305 4.1e-165 587.0 776 45.0
Psat4g077000 Pisum sativum HOM05D006132 ORTHO05D007305 2.5e-162 577.8 740 46.9
CARHR240810 Cardamine hirsuta HOM05D006132 ORTHO05D007305 1.1e-112 412.9 310 66.5
SHI18807 Sapria himalayana HOM05D006132 ORTHO05D007305 2.9e-110 404.8 779 35.3
TAR636G2276 Trochodendron aralioides HOM05D006132 ORTHO05D007305 1.6e-76 292.7 200 71.5
TAR636G0297 Trochodendron aralioides HOM05D006132 ORTHO05D007305 1.1e-64 253.4 483 36.6
Psat2g119040 Pisum sativum HOM05D006132 ORTHO05D007305 1.7e-62 246.1 222 59.0
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 1.3e-57 229.9 207 56.0
SHI18803 Sapria himalayana HOM05D006132 ORTHO05D007305 1.3e-54 219.9 337 41.5
Cpa.g.sc7.234 Carica papaya HOM05D006132 ORTHO05D007305 4.0e-51 208.4 124 78.2
Zm00001eb053310 Zea mays HOM05D006132 ORTHO05D007305 8.9e-35 154.1 247 40.1
Glyma.18G112500 Glycine max HOM05D006132 ORTHO05D007305 3.0e-30 139.0 80 85.0
Carub.0003s0455 Capsella rubella HOM05D006132 ORTHO05D007305 1.9e-29 136.3 197 39.6
Zm00001eb053300 Zea mays HOM05D006132 ORTHO05D007305 1.0e-27 130.6 151 47.7
Sabra06G0183100 Salix brachista HOM05D006132 ORTHO05D007305 4.9e-17 95.1 122 48.4
CDE12G0288 Ceratophyllum demersum HOM05D004517 ORTHO05D005366 7.1e-16 91.3 88 55.7
CiPaw.04G074200 Carya illinoinensis HOM05D006132 ORTHO05D007305 6.0e-15 88.2 61 65.6
MCO10G298 Micromonas commoda HOM05D006132 ORTHO05D007305 2.8e-12 79.3 132 35.6
SMO351G0355 Selaginella moellendorffii HOM05D023170 ORTHO05D007305 1.2e-07 63.9 88 48.9


User provided reference genes

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