Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 3.1e-273 944.5 473 100.0
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 3.2e-270 934.5 473 98.9
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 1.5e-262 909.1 474 96.4
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 1.6e-248 862.4 473 90.5
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 8.6e-247 856.7 475 90.9
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 1.2e-240 836.3 478 87.4
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 3.9e-231 804.7 476 86.6
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 2.1e-216 755.7 480 76.0
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 4.3e-214 748.0 478 75.7
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 1.7e-210 736.1 485 74.2
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 1.7e-210 736.1 490 73.5
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 4.9e-210 734.6 473 76.1
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 8.4e-210 733.8 474 75.5
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 5.4e-209 731.1 473 74.8
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 1.0e-207 726.9 479 74.5
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 2.3e-207 725.7 481 73.2
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 2.3e-207 725.7 481 73.2
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 3.9e-207 724.9 473 74.2
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 8.7e-207 723.8 479 73.9
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 1.1e-206 723.4 473 74.8
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 1.5e-206 723.0 483 73.3
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 1.5e-206 723.0 480 73.3
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 3.3e-206 721.8 476 72.9
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 4.3e-206 721.5 483 71.4
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 4.3e-206 721.5 473 73.6
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 4.3e-206 721.5 480 73.5
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 4.3e-206 721.5 479 73.1
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 5.6e-206 721.1 479 72.2
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 5.6e-206 721.1 493 72.0
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 2.8e-205 718.8 477 72.7
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 2.8e-205 718.8 473 74.0
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 3.6e-205 718.4 476 72.7
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 3.6e-205 718.4 479 73.7
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 1.1e-204 716.8 479 71.8
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 3.1e-204 715.3 509 69.5
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 4.0e-204 714.9 480 71.7
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 6.9e-204 714.1 475 73.5
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 1.2e-203 713.4 481 70.9
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 2.0e-203 712.6 480 73.1
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 3.4e-203 711.8 482 71.2
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 4.5e-203 711.4 480 71.0
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 5.8e-203 711.1 483 72.5
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 7.6e-203 710.7 482 71.6
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 2.2e-202 709.1 477 72.1
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 2.2e-202 709.1 480 71.5
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 2.9e-202 708.8 476 74.2
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 2.4e-201 705.7 480 70.8
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 4.2e-201 704.9 479 72.4
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 7.1e-201 704.1 480 72.7
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 9.3e-201 703.7 473 73.4
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 1.2e-200 703.4 488 70.7
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 2.7e-200 702.2 487 71.3
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 4.6e-200 701.4 477 70.6
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 1.8e-199 699.5 484 71.3
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 2.3e-199 699.1 479 69.7
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 3.9e-199 698.4 481 70.7
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 5.1e-199 698.0 480 70.6
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 8.7e-199 697.2 482 71.4
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 1.1e-198 696.8 499 69.5
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 1.1e-198 696.8 480 70.8
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 7.4e-198 694.1 480 70.2
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 1.1e-196 690.3 480 70.0
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 1.4e-196 689.9 480 70.4
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 3.1e-196 688.7 480 69.6
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 3.1e-196 688.7 473 70.8
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 4.0e-196 688.3 480 69.2
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 5.3e-196 688.0 480 68.5
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 6.9e-196 687.6 480 70.4
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 6.9e-196 687.6 484 70.2
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 1.5e-195 686.4 480 69.6
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 9.9e-195 683.7 517 67.1
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 2.9e-194 682.2 480 69.8
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 3.8e-194 681.8 474 69.2
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 6.4e-194 681.0 480 70.0
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 1.2e-192 676.8 481 67.8
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 4.6e-192 674.9 480 66.9
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 3.3e-190 668.7 477 67.5
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 4.3e-190 668.3 474 67.9
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 1.3e-189 666.8 450 70.9
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 3.1e-188 662.1 474 67.1
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 5.3e-188 661.4 482 66.2
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 6.9e-188 661.0 474 68.1
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 9.0e-188 660.6 477 66.9
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 1.2e-187 660.2 488 67.6
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 3.4e-187 658.7 449 70.6
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 4.5e-187 658.3 474 67.3
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 1.7e-186 656.4 458 71.6
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 3.8e-186 655.2 474 66.9
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 4.9e-186 654.8 474 67.1
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 6.5e-186 654.4 487 66.7
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 1.9e-185 652.9 474 66.9
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 1.9e-185 652.9 474 66.9
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 3.2e-185 652.1 474 66.5
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 7.1e-185 651.0 507 63.3
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 2.1e-184 649.4 488 65.0
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 2.1e-184 649.4 473 65.8
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 6.0e-184 647.9 472 65.0
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 1.9e-182 642.9 498 63.9
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 1.9e-182 642.9 415 73.0
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 7.4e-182 641.0 432 70.6
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 9.7e-182 640.6 478 64.9
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 3.1e-180 635.6 472 64.8
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 5.9e-179 631.3 492 64.0
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 1.0e-178 630.6 570 56.7
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 1.9e-177 626.3 552 60.7
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 8.7e-175 617.5 429 70.4
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 9.1e-172 607.4 474 63.3
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 1.2e-171 607.1 415 71.1
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 2.2e-170 602.8 524 60.1
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 2.3e-167 592.8 482 63.1
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 1.2e-163 580.5 470 61.5
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 1.1e-161 573.9 423 68.1
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 2.5e-161 572.8 490 58.4
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 8.0e-160 567.8 486 58.4
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 3.7e-157 558.9 476 56.7
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 2.7e-147 526.2 413 63.9
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 5.0e-138 495.4 358 67.6
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 4.0e-135 485.7 490 53.1
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 7.0e-132 474.9 480 53.5
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 5.2e-103 379.0 597 39.2
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 1.1e-95 354.8 253 63.6
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 2.7e-91 340.1 524 41.0
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 2.7e-91 340.1 256 65.6
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 3.4e-86 323.2 215 75.3
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.7e-77 294.3 182 70.3
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 2.3e-74 283.9 539 36.0
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 3.7e-72 276.6 255 53.7
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 6.2e-72 275.8 381 44.6
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 4.0e-71 273.1 210 59.5
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 1.2e-67 261.5 184 75.0
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 3.8e-61 240.0 175 62.3
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 4.3e-57 226.5 474 32.9
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 2.2e-56 224.2 260 45.4
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 3.9e-50 203.4 428 34.3
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 1.6e-43 181.4 170 53.5
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 8.8e-42 175.6 377 32.4
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 4.8e-40 169.9 448 30.1
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 2.0e-38 164.5 446 28.5
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 1.8e-34 151.4 212 44.8
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 1.2e-33 148.7 220 39.1
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 1.2e-19 102.1 186 38.7
AagrBONN_evm.TU.Sc2ySwM_368.1145 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.7e-16 91.7 133 39.1
GSVIVG01005416001 Vitis vinifera HOM05D004987 ORTHO05D005960 5.0e-13 80.1 66 66.7
MELO3C000413.2 Cucumis melo HOM05D004987 ORTHO05D005960 1.5e-12 78.6 66 62.1
TPR.G35318 Trifolium pratense HOM05D004987 ORTHO05D005960 8.0e-11 72.8 66 56.1
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 8.9e-10 69.3 64 53.1
PSO339G0319 Papaver somniferum HOM05D004987 ORTHO05D005960 8.9e-10 69.3 69 53.6
PSO832G0476 Papaver somniferum HOM05D000145 ORTHO05D001435 1.2e-09 68.9 68 54.4
arahy.Tifrunner.gnm1.ann1.N1GFR4 Arachis hypogaea HOM05D004987 ORTHO05D005960 2.0e-09 68.2 51 58.8
arahy.Tifrunner.gnm1.ann1.028TPL Arachis hypogaea HOM05D004987 ORTHO05D005960 4.6e-06 57.0 70 44.3


User provided reference genes

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