Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g065760.3 Solanum lycopersicum HOM05D004975 ORTHO05D005963 2.0e-115 419.1 212 100.0
Sopen10g033590 Solanum pennellii HOM05D004975 ORTHO05D005963 2.0e-115 419.1 212 100.0
PGSC0003DMG400013829 Solanum tuberosum HOM05D004975 ORTHO05D005963 2.3e-114 415.6 212 98.6
Nitab4.5_0000250g0160 Nicotiana tabacum HOM05D004975 ORTHO05D005963 1.6e-107 392.9 212 92.0
Peaxi162Scf00105g00510 Petunia axillaris HOM05D004975 ORTHO05D005963 2.1e-104 382.5 213 91.1
Nitab4.5_0002393g0070 Nicotiana tabacum HOM05D004975 ORTHO05D005963 9.9e-102 373.6 212 89.2
Sopen08g019440 Solanum pennellii HOM05D004975 ORTHO05D005963 3.4e-94 348.6 179 98.3
Cc08_g08560 Coffea canephora HOM05D004975 ORTHO05D005963 2.5e-89 332.4 222 76.1
CSS0002597 Camellia sinensis var. sinensis HOM05D004975 ORTHO05D005963 6.2e-88 327.8 213 77.9
Actinidia13302 Actinidia chinensis HOM05D004975 ORTHO05D005963 1.3e-85 320.1 212 78.8
CiPaw.01G062200 Carya illinoinensis HOM05D004975 ORTHO05D005963 3.8e-85 318.5 222 73.0
Dinv30242 Davidia involucrata HOM05D004975 ORTHO05D005963 8.4e-85 317.4 217 75.1
CiPaw.08G019900 Carya illinoinensis HOM05D004975 ORTHO05D005963 1.1e-84 317.0 222 73.4
MSTRG.11721 Avicennia marina HOM05D004975 ORTHO05D005963 3.2e-84 315.5 220 73.2
Actinidia13417 Actinidia chinensis HOM05D004975 ORTHO05D005963 4.2e-84 315.1 216 75.9
Hma1.2p1_0140F.1_g063690 Hydrangea macrophylla HOM05D004975 ORTHO05D005963 7.1e-84 314.3 219 73.5
Gohir.A07G060900 Gossypium hirsutum HOM05D004975 ORTHO05D005963 1.0e-82 310.5 214 73.4
Gorai.001G069100 Gossypium raimondii HOM05D004975 ORTHO05D005963 1.7e-82 309.7 214 73.4
SGA_v2.0_scaffold27G11528 Striga asiatica HOM05D004975 ORTHO05D005963 1.1e-81 307.0 213 73.7
SGA_v2.0_scaffold229G43318 Striga asiatica HOM05D004975 ORTHO05D005963 1.5e-81 306.6 209 73.7
Migut.A00251 Erythranthe guttata HOM05D004975 ORTHO05D005963 7.3e-81 304.3 219 71.7
Duzib187G1289 Durio zibethinus HOM05D004975 ORTHO05D005963 9.6e-81 303.9 218 69.7
COL.COLO4_19031 Corchorus olitorius HOM05D004975 ORTHO05D005963 1.6e-80 303.1 221 69.2
Duzib168G2230 Durio zibethinus HOM05D004975 ORTHO05D005963 2.1e-80 302.8 219 70.3
Gohir.D07G065600 Gossypium hirsutum HOM05D004975 ORTHO05D005963 2.8e-80 302.4 214 72.9
Ciclev10009422m.g Citrus clementina HOM05D004975 ORTHO05D005963 8.1e-80 300.8 223 69.1
Eucgr.H01931 Eucalyptus grandis HOM05D004975 ORTHO05D005963 1.1e-79 300.4 215 69.8
CsaV3_3G001030 Cucumis sativus L. HOM05D004975 ORTHO05D005963 1.4e-79 300.1 223 70.4
Thecc.09G007400 Theobroma cacao HOM05D004975 ORTHO05D005963 1.4e-79 300.1 199 75.9
ECA248G0122 Erigeron canadensis HOM05D004975 ORTHO05D005963 2.4e-79 299.3 213 71.8
PGR044G1665 Punica granatum HOM05D004975 ORTHO05D005963 4.0e-79 298.5 201 74.6
HanXRQChr01g0029381 Helianthus annuus HOM05D004975 ORTHO05D005963 6.9e-79 297.7 213 71.8
HanXRQChr11g0341541 Helianthus annuus HOM05D004975 ORTHO05D005963 6.9e-79 297.7 213 71.8
QL12p025158 Quercus lobata HOM05D004975 ORTHO05D005963 9.0e-79 297.4 185 76.8
Sc24g0001980 Simmondsia chinensis HOM05D004975 ORTHO05D005963 1.2e-78 297.0 218 71.6
DCAR_007697 Daucus carota HOM05D004975 ORTHO05D005963 1.5e-78 296.6 201 73.6
EL10Ac2g04836 Beta vulgaris HOM05D004975 ORTHO05D005963 2.0e-78 296.2 212 70.8
ClCG10G000990 Citrullus lanatus HOM05D004975 ORTHO05D005963 5.8e-78 294.7 191 76.4
THA.LOC104803875 Tarenaya hassleriana HOM05D004975 ORTHO05D005963 5.8e-78 294.7 217 68.2
Lsat_1_v5_gn_1_49060 Lactuca sativa HOM05D004975 ORTHO05D005963 7.6e-78 294.3 185 77.3
Potri.018G006900 Populus trichocarpa HOM05D004975 ORTHO05D005963 7.6e-78 294.3 185 75.7
ECA248G2823 Erigeron canadensis HOM05D004975 ORTHO05D005963 4.9e-77 291.6 212 70.3
MELO3C013792.2 Cucumis melo HOM05D004975 ORTHO05D005963 6.4e-77 291.2 224 69.2
Cpa.g.sc6.221 Carica papaya HOM05D004975 ORTHO05D005963 8.4e-77 290.8 222 68.0
Atru.chr7.2646 Acer truncatum HOM05D004975 ORTHO05D005963 4.2e-76 288.5 216 67.6
TAR625G0147 Trochodendron aralioides HOM05D004975 ORTHO05D005963 7.1e-76 287.7 202 72.3
Hund22233 Selenicereus undatus HOM05D004975 ORTHO05D005963 1.2e-75 287.0 215 68.8
Sed0019969 Sechium edule HOM05D004975 ORTHO05D005963 2.1e-75 286.2 212 67.0
TWI34G1428 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 3.5e-75 285.4 212 67.9
GSVIVG01009932001 Vitis vinifera HOM05D004975 ORTHO05D005963 3.5e-75 285.4 223 68.6
TAR383G0773 Trochodendron aralioides HOM05D004975 ORTHO05D005963 6.0e-75 284.6 202 71.8
Hund06848 Selenicereus undatus HOM05D004975 ORTHO05D005963 2.3e-74 282.7 193 74.6
TAR383G0873 Trochodendron aralioides HOM05D004975 ORTHO05D005963 1.9e-73 279.6 178 77.0
Phvul.011G072600 Phaseolus vulgaris HOM05D004975 ORTHO05D005963 7.4e-73 277.7 178 76.4
arahy.Tifrunner.gnm1.ann1.1NF0KF Arachis hypogaea HOM05D004975 ORTHO05D005963 9.6e-73 277.3 196 71.9
Glyma.12G071700 Glycine max HOM05D004975 ORTHO05D005963 1.6e-72 276.6 186 72.6
TWI63G0658 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 1.6e-72 276.6 205 68.8
unitig_46.g18530 Utricularia gibba HOM05D004975 ORTHO05D005963 1.6e-72 276.6 179 74.3
Ah.06g191340 Amaranthus hybridus HOM05D004975 ORTHO05D005963 2.8e-72 275.8 216 65.7
EL10Ac4g08846 Beta vulgaris HOM05D004975 ORTHO05D005963 2.8e-72 275.8 200 69.5
VMungo1127G2243 Vigna mungo HOM05D004975 ORTHO05D005963 3.7e-72 275.4 185 74.6
arahy.Tifrunner.gnm1.ann1.KS8K1P Arachis hypogaea HOM05D004975 ORTHO05D005963 4.8e-72 275.0 196 71.4
Manes.17G086700 Manihot esculenta HOM05D004975 ORTHO05D005963 4.8e-72 275.0 185 73.0
Lalb_Chr18g0045061 Lupinus albus HOM05D004975 ORTHO05D005963 6.2e-72 274.6 186 72.6
CANSAT64G0033 Cannabis sativa HOM05D004975 ORTHO05D005963 8.1e-72 274.2 200 71.0
Glyma.11G153169 Glycine max HOM05D004975 ORTHO05D005963 1.1e-71 273.9 205 67.3
Lj3g0002799 Lotus japonicus HOM05D004975 ORTHO05D005963 1.8e-71 273.1 186 72.0
Lj3g0015990 Lotus japonicus HOM05D004975 ORTHO05D005963 2.4e-71 272.7 186 72.0
AL7G20600 Arabidopsis lyrata HOM05D004975 ORTHO05D005963 5.3e-71 271.6 199 69.3
CANSAT25G3538 Cannabis sativa HOM05D004975 ORTHO05D005963 5.3e-71 271.6 183 73.2
Psat6g036480 Pisum sativum HOM05D004975 ORTHO05D005963 5.3e-71 271.6 201 68.7
CAN.G886.9 Capsicum annuum HOM05D004975 ORTHO05D005963 9.0e-71 270.8 147 91.2
TPR.G24523 Trifolium pratense HOM05D004975 ORTHO05D005963 1.5e-70 270.0 192 70.3
arahy.Tifrunner.gnm1.ann1.GL41SS Arachis hypogaea HOM05D004975 ORTHO05D005963 5.8e-70 268.1 196 69.4
CARHR239350 Cardamine hirsuta HOM05D004975 ORTHO05D005963 1.3e-69 266.9 179 71.5
Aa31LG2G18860 Aethionema arabicum HOM05D004975 ORTHO05D005963 1.7e-69 266.5 191 69.6
Rhsim04G0150100 Rhododendron simsii HOM05D004975 ORTHO05D005963 3.8e-69 265.4 208 67.8
Aqoxy7G00181 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 6.5e-69 264.6 178 73.0
ATR0580G184 Amborella trichopoda HOM05D004975 ORTHO05D005963 8.4e-69 264.2 199 68.8
MBI16_g41808_MAGBIO Magnolia biondii HOM05D004975 ORTHO05D005963 8.4e-69 264.2 200 67.5
Medtr1g007480 Medicago truncatula HOM05D004975 ORTHO05D005963 1.4e-68 263.5 196 67.9
FvH4_2g36661 Fragaria vesca HOM05D004975 ORTHO05D005963 2.1e-67 259.6 227 62.1
RcHm_v2.0_Chr6g0305011 Rosa chinensis HOM05D004975 ORTHO05D005963 4.6e-67 258.5 227 62.1
AT4G31460 Arabidopsis thaliana HOM05D004975 ORTHO05D005963 2.3e-66 256.1 175 71.4
FAN20G1154 Fragaria x ananassa HOM05D007251 ORTHO05D009266 2.3e-66 256.1 227 61.2
Sabra18G0014600 Salix brachista HOM05D004975 ORTHO05D005963 3.9e-66 255.4 299 48.2
SHI04272 Sapria himalayana HOM05D004975 ORTHO05D005963 1.5e-65 253.4 199 64.8
CDE05G0021 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 1.9e-65 253.1 185 68.6
A01p06810 Brassica napus HOM05D004975 ORTHO05D005963 2.5e-65 252.7 170 72.4
BraA01t00633Z Brassica rapa HOM05D004975 ORTHO05D005963 2.5e-65 252.7 170 72.4
Thhalv10026230m.g Eutrema salsugineum HOM05D004975 ORTHO05D005963 2.5e-65 252.7 170 72.4
Carub.0007s0909 Capsella rubella HOM05D004975 ORTHO05D005963 3.3e-65 252.3 170 71.2
C01p07550 Brassica napus HOM05D004975 ORTHO05D005963 5.7e-65 251.5 170 71.8
BolC1t00736H Brassica oleracea HOM05D004975 ORTHO05D005963 5.7e-65 251.5 170 71.8
arahy.Tifrunner.gnm1.ann1.57HDZK Arachis hypogaea HOM05D004975 ORTHO05D005963 7.4e-65 251.1 196 67.9
A08p18600 Brassica napus HOM05D004975 ORTHO05D005963 9.6e-65 250.8 169 71.6
Sp7g29320 Schrenkiella parvula HOM05D004975 ORTHO05D005963 9.6e-65 250.8 170 71.8
BcaC09g51928 Brassica carinata HOM05D004975 ORTHO05D005963 1.3e-64 250.4 170 71.2
BraA08t33823Z Brassica rapa HOM05D004975 ORTHO05D005963 1.3e-64 250.4 170 71.2
Ca_12771_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 1.3e-64 250.4 195 64.6
BcaB03g12697 Brassica carinata HOM05D004975 ORTHO05D005963 1.6e-64 250.0 170 71.2
CDE02G4585 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 1.6e-64 250.0 174 71.8
BcaNung04586 Brassica carinata HOM05D004975 ORTHO05D005963 2.1e-64 249.6 169 71.0
Os07g0544900 Oryza sativa ssp. japonica HOM05D004975 ORTHO05D005963 2.8e-64 249.2 194 63.4
Zm00001eb323470 Zea mays HOM05D004975 ORTHO05D005963 3.1e-63 245.7 199 60.8
BcaC01g01087 Brassica carinata HOM05D004975 ORTHO05D005963 9.0e-63 244.2 170 70.0
C03p87960 Brassica napus HOM05D004975 ORTHO05D005963 9.0e-63 244.2 170 70.0
BolC3t21107H Brassica oleracea HOM05D004975 ORTHO05D005963 9.0e-63 244.2 170 70.0
HPP92_011116 Vanilla planifolia HOM05D004975 ORTHO05D005963 2.0e-62 243.0 177 67.2
Solyc10g038060.2 Solanum lycopersicum HOM05D004975 ORTHO05D005963 1.2e-59 233.8 172 70.9
Zm00001eb106440 Zea mays HOM05D004975 ORTHO05D005963 2.7e-59 232.6 194 59.3
Haze_21744 Corylus avellana HOM05D004975 ORTHO05D005963 6.1e-59 231.5 286 47.2
MD08G1128100 Malus domestica HOM05D004975 ORTHO05D005963 3.9e-58 228.8 242 53.3
Prupe.1G459900 Prunus persica HOM05D004975 ORTHO05D005963 3.9e-58 228.8 241 53.9
FAN06G0478 Fragaria x ananassa HOM05D004975 ORTHO05D005963 1.9e-57 226.5 189 64.6
MD15G1107600 Malus domestica HOM05D004975 ORTHO05D005963 1.4e-55 220.3 202 56.9
Oeu031567.1 Olea europaea HOM05D004975 ORTHO05D005963 4.1e-55 218.8 151 72.2
PSO063G2087 Papaver somniferum HOM05D004975 ORTHO05D005963 6.9e-55 218.0 218 56.0
PSO170G1562 Papaver somniferum HOM05D004975 ORTHO05D005963 6.9e-55 218.0 218 56.0
PSO063G4606 Papaver somniferum HOM05D004975 ORTHO05D005963 1.2e-54 217.2 214 55.6
Lj7C709T7 Lonicera japonica HOM05D004975 ORTHO05D005963 2.6e-54 216.1 143 75.5
FvH4_7g03740 Fragaria vesca HOM05D004975 ORTHO05D005963 4.2e-52 208.8 135 75.6
SEGI_29047 Sequoiadendron giganteum HOM05D004975 ORTHO05D005963 7.9e-51 204.5 174 60.3
AUR62027460 Chenopodium quinoa HOM05D004975 ORTHO05D005963 8.8e-50 201.1 151 69.5
Manes.15G137600 Manihot esculenta HOM05D004975 ORTHO05D005963 3.3e-49 199.1 192 56.8
PSO782G1312 Papaver somniferum HOM05D004975 ORTHO05D005963 4.8e-48 195.3 141 65.2
Nn2g12690 Nelumbo nucifera HOM05D004975 ORTHO05D005963 1.4e-47 193.7 118 80.5
vmacro05353 Vaccinium macrocarpon HOM05D004975 ORTHO05D005963 6.1e-43 178.3 138 68.1
Cfa013273 Carpinus fangiana HOM05D004975 ORTHO05D005963 5.1e-42 175.3 148 62.8
Ca_29761_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 1.5e-41 173.7 131 66.4
HPP92_011121 Vanilla planifolia HOM05D004975 ORTHO05D005963 1.0e-37 161.0 157 57.3
Pp3c2_35700 Physcomitrium patens HOM05D004975 ORTHO05D005963 1.6e-35 153.7 126 61.1
SMO367G1088 Selaginella moellendorffii HOM05D004975 ORTHO05D005963 1.6e-35 153.7 113 62.8
Mapoly0026s0002 Marchantia polymorpha HOM05D004975 ORTHO05D005963 1.4e-34 150.6 113 61.1
AagrBONN_evm.TU.Sc2ySwM_117.1642 Anthoceros agrestis HOM05D004975 ORTHO05D005963 8.8e-34 147.9 131 55.7
BcaC01g01097 Brassica carinata HOM05D004975 ORTHO05D005963 1.7e-29 133.7 94 69.1
Oeu033208.1 Olea europaea HOM05D004975 ORTHO05D005963 1.7e-29 133.7 99 70.7
C03p88060 Brassica napus HOM05D004975 ORTHO05D005963 2.2e-29 133.3 92 69.6
BcaNung01521 Brassica carinata HOM05D004975 ORTHO05D005963 4.2e-28 129.0 135 54.8
BcaNung04139 Brassica carinata HOM05D004975 ORTHO05D005963 4.2e-28 129.0 135 54.8
Sopen10g011390 Solanum pennellii HOM05D004975 ORTHO05D005963 3.7e-24 115.9 61 91.8
Aqoxy3G03669 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 3.5e-22 109.4 62 77.4
AUR62027459 Chenopodium quinoa HOM05D004975 ORTHO05D005963 1.5e-17 94.0 66 71.2
BcaB03g12699 Brassica carinata HOM05D004975 ORTHO05D005963 2.8e-16 89.7 90 50.0
PRCOL_00000323 Prasinoderma coloniale HOM05D004975 ORTHO05D005963 4.9e-16 89.0 76 56.6
Cfa025056 Carpinus fangiana HOM05D004975 ORTHO05D005963 8.6e-13 78.2 73 50.7
CBR_g8145 Chara braunii HOM05D004975 ORTHO05D005963 1.6e-11 73.9 54 61.1
CiPaw.07G212300 Carya illinoinensis HOM05D004975 ORTHO05D005963 4.7e-11 72.4 48 72.9
AagrBONN_evm.TU.Sc2ySwM_368.1480 Anthoceros agrestis HOM05D001654 ORTHO05D002773 2.9e-08 63.2 46 56.5


User provided reference genes

Program Settings