Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g065620.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 3.7e-88 328.2 164 100.0
CAN.G223.15 Capsicum annuum HOM05D001560 ORTHO05D004675 2.8e-51 205.7 102 96.1
Solyc00g019950.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 6.1e-51 204.5 102 96.1
arahy.Tifrunner.gnm1.ann1.HAH5KR Arachis hypogaea HOM05D001560 ORTHO05D004675 1.2e-49 200.3 102 93.1
LjContig00439g0006307 Lotus japonicus HOM05D001560 ORTHO05D004675 1.5e-49 199.9 102 93.1
LjContig00446g0014136 Lotus japonicus HOM05D001560 ORTHO05D004675 1.5e-49 199.9 102 93.1
Gohir.A01G022400 Gossypium hirsutum HOM05D001560 ORTHO05D004675 2.0e-49 199.5 102 92.2
CANSAT16G0009 Cannabis sativa HOM05D001560 ORTHO05D004675 2.6e-49 199.1 102 92.2
SalBow1G1852 Salvia bowleyana HOM05D001560 ORTHO05D004675 2.6e-49 199.1 102 92.2
CsaV3_UNG210330 Cucumis sativus L. HOM05D001560 ORTHO05D004675 3.4e-49 198.7 101 94.1
Lalb_Chr00c39g0409121 Lupinus albus HOM05D001560 ORTHO05D004675 3.4e-49 198.7 102 93.1
Lalb_Chr00c39g0409261 Lupinus albus HOM05D001560 ORTHO05D004675 3.4e-49 198.7 102 93.1
Lalb_Chr00c51g0413181 Lupinus albus HOM05D001560 ORTHO05D004675 3.4e-49 198.7 102 93.1
Aa31csc239G40 Aethionema arabicum HOM05D001560 ORTHO05D004675 4.4e-49 198.4 101 93.1
ATMG00070 Arabidopsis thaliana HOM05D001560 ORTHO05D004675 4.4e-49 198.4 101 93.1
BolSC28t60362H Brassica oleracea HOM05D001560 ORTHO05D004675 4.4e-49 198.4 101 93.1
BraSC48t46349Z Brassica rapa HOM05D001560 ORTHO05D004675 4.4e-49 198.4 101 93.1
CARHR282620 Cardamine hirsuta HOM05D001560 ORTHO05D004675 4.4e-49 198.4 101 93.1
Thhalv10002997m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 4.4e-49 198.4 101 93.1
Thhalv10022839m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 4.4e-49 198.4 101 93.1
Sp3g25870 Schrenkiella parvula HOM05D001560 ORTHO05D004675 4.4e-49 198.4 101 93.1
Gorai.001G166700 Gossypium raimondii HOM05D007877 ORTHO05D009957 7.5e-49 197.6 124 79.8
Sed0020323 Sechium edule HOM05D001560 ORTHO05D004675 1.3e-48 196.8 101 92.1
BcaC09g49590 Brassica carinata HOM05D001560 ORTHO05D004675 2.2e-48 196.1 101 92.1
BcaC09g49591 Brassica carinata HOM05D001560 ORTHO05D004675 2.2e-48 196.1 101 92.1
Lj2P1224T99 Lonicera japonica HOM05D001560 ORTHO05D004675 2.2e-48 196.1 104 90.4
Dinv06677 Davidia involucrata HOM05D001560 ORTHO05D004675 4.9e-48 194.9 102 91.2
Migut.D01524 Erythranthe guttata HOM05D001560 ORTHO05D004675 4.9e-48 194.9 104 90.4
Hma1.2p1_1099F.1_g256790 Hydrangea macrophylla HOM05D001560 ORTHO05D004675 4.9e-48 194.9 102 91.2
Lj2P1227T100 Lonicera japonica HOM05D001560 ORTHO05D004675 4.9e-48 194.9 102 91.2
SGA_v2.0_scaffold245G44645 Striga asiatica HOM05D001560 ORTHO05D004675 4.9e-48 194.9 102 90.2
Ah.02g118870 Amaranthus hybridus HOM05D001560 ORTHO05D004675 8.3e-48 194.1 102 90.2
RcHm_v2.0_Chr6g0257991 Rosa chinensis HOM05D001560 ORTHO05D004675 8.3e-48 194.1 102 91.2
RcHm_v2.0_MTg0498881 Rosa chinensis HOM05D001560 ORTHO05D004675 8.3e-48 194.1 102 91.2
unitig_87.g28016 Utricularia gibba HOM05D001560 ORTHO05D004675 1.1e-47 193.7 102 91.2
DCAR_031657 Daucus carota HOM05D001560 ORTHO05D004675 1.4e-47 193.4 102 90.2
DCAR_032222 Daucus carota HOM05D001560 ORTHO05D004675 1.4e-47 193.4 102 90.2
DCAR_032439 Daucus carota HOM05D001560 ORTHO05D004675 1.4e-47 193.4 102 90.2
Ah.10g027950 Amaranthus hybridus HOM05D001560 ORTHO05D004675 2.4e-47 192.6 102 89.2
Ah.10g028660 Amaranthus hybridus HOM05D001560 ORTHO05D004675 2.4e-47 192.6 102 89.2
Potri.013G066660 Populus trichocarpa HOM05D001560 ORTHO05D004675 2.4e-47 192.6 101 90.1
SabraMtG0007900 Salix brachista HOM05D001560 ORTHO05D004675 2.4e-47 192.6 101 90.1
Lsat_1_v5_gn_1_23980 Lactuca sativa HOM05D001560 ORTHO05D004675 2.7e-46 189.1 102 89.2
Medtr0212s0080 Medicago truncatula HOM05D001560 ORTHO05D004675 3.5e-46 188.7 101 90.1
Psat7g198960 Pisum sativum HOM05D001560 ORTHO05D004675 3.5e-46 188.7 101 90.1
SHI51143 Sapria himalayana HOM05D001560 ORTHO05D004675 3.5e-46 188.7 101 88.1
HanXRQChr00c0055g0571471 Helianthus annuus HOM05D001560 ORTHO05D004675 7.8e-46 187.6 102 88.2
HanXRQChr12g0358671 Helianthus annuus HOM05D001560 ORTHO05D004675 7.8e-46 187.6 102 88.2
HanXRQMTg0579651 Helianthus annuus HOM05D001560 ORTHO05D004675 7.8e-46 187.6 102 88.2
ECA039G0015 Erigeron canadensis HOM05D001560 ORTHO05D004675 1.0e-45 187.2 101 89.1
ECA039G0026 Erigeron canadensis HOM05D001560 ORTHO05D004675 1.0e-45 187.2 101 89.1
SHI37164 Sapria himalayana HOM05D001560 ORTHO05D003613 1.0e-45 187.2 101 87.1
MBI05_g23323_MAGBIO Magnolia biondii HOM05D001560 ORTHO05D004675 3.8e-45 185.3 102 87.3
SHI36380 Sapria himalayana HOM05D001560 ORTHO05D004675 6.6e-45 184.5 107 83.2
SHI40934 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-44 183.7 101 86.1
SHI39080 Sapria himalayana HOM05D001560 ORTHO05D004675 1.5e-44 183.3 101 85.1
SHI33931 Sapria himalayana HOM05D001560 ORTHO05D004675 1.9e-44 183.0 97 88.7
Ah.08g210720 Amaranthus hybridus HOM05D001560 ORTHO05D004675 3.3e-44 182.2 102 86.3
Nn1g10115 Nelumbo nucifera HOM05D001560 ORTHO05D004675 3.3e-44 182.2 101 88.1
Solyc03g061560.3 Solanum lycopersicum HOM05D001560 ORTHO05D004675 4.3e-44 181.8 101 87.1
SHI48979 Sapria himalayana HOM05D001560 ORTHO05D004675 7.3e-44 181.0 100 86.0
SHI51556 Sapria himalayana HOM05D001560 ORTHO05D004675 9.5e-44 180.6 103 84.5
SHI35188 Sapria himalayana HOM05D001560 ORTHO05D004675 1.6e-43 179.9 101 84.2
SHI37162 Sapria himalayana HOM05D001560 ORTHO05D004675 1.6e-43 179.9 100 86.0
BraSC177t45760Z Brassica rapa HOM05D001560 ORTHO05D004675 3.6e-43 178.7 93 91.4
SHI42286 Sapria himalayana HOM05D000743 ORTHO05D004675 6.1e-43 177.9 97 86.6
HanXRQChr02g0035261 Helianthus annuus HOM05D001560 ORTHO05D004675 2.3e-42 176.0 102 83.3
Cpa.g.sc38.8 Carica papaya HOM05D001560 ORTHO05D004675 1.2e-41 173.7 101 84.2
SHI46062 Sapria himalayana HOM05D001560 ORTHO05D004675 1.5e-41 173.3 101 82.2
SHI52730 Sapria himalayana HOM05D001560 ORTHO05D004675 2.6e-41 172.6 101 81.2
CDE02G0735 Ceratophyllum demersum HOM05D001560 ORTHO05D004675 7.5e-41 171.0 102 81.4
Zm00001eb382940 Zea mays HOM05D001560 ORTHO05D004675 9.8e-41 170.6 102 81.4
SHI35320 Sapria himalayana HOM05D001560 ORTHO05D004675 3.7e-40 168.7 107 75.7
SHI36583 Sapria himalayana HOM05D001560 ORTHO05D004675 3.2e-39 165.6 116 73.3
BraSC48t46227Z Brassica rapa HOM05D001560 ORTHO05D004675 4.1e-39 165.2 94 85.1
Nitab4.5_0001152g0390 Nicotiana tabacum HOM05D001560 ORTHO05D004675 6.0e-38 161.4 91 85.7
SHI50434 Sapria himalayana HOM05D001560 ORTHO05D004675 4.3e-36 155.2 101 78.2
Peaxi162Scf01588g00002 Petunia axillaris HOM05D001560 ORTHO05D004675 2.1e-35 152.9 102 75.5
SHI37161 Sapria himalayana HOM05D000743 ORTHO05D000580 4.7e-35 151.8 101 73.3
Sc13g0007750 Simmondsia chinensis HOM05D001560 ORTHO05D004675 1.8e-34 149.8 80 88.8
SHI35332 Sapria himalayana HOM05D001560 ORTHO05D004675 2.3e-34 149.4 85 82.4
BolSC28t60305H Brassica oleracea HOM05D001560 ORTHO05D004675 1.3e-32 143.7 100 71.0
HanXRQChr10g0297171 Helianthus annuus HOM05D001560 ORTHO05D004675 4.9e-32 141.7 84 83.3
RhsimMtG0004600 Rhododendron simsii HOM05D001560 ORTHO05D004675 2.4e-31 139.4 73 90.4
RhsimMtG0006100 Rhododendron simsii HOM05D001560 ORTHO05D004675 2.4e-31 139.4 73 90.4
Actinidia34872 Actinidia chinensis HOM05D001560 ORTHO05D004675 5.4e-31 138.3 99 71.7
SHI54988 Sapria himalayana HOM05D001560 ORTHO05D004675 1.6e-30 136.7 75 85.3
SHI54579 Sapria himalayana HOM05D001560 ORTHO05D004675 3.0e-29 132.5 69 91.3
SHI49196 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-28 130.6 69 88.4
SHI36971 Sapria himalayana HOM05D001560 ORTHO05D004675 2.5e-28 129.4 69 89.9
SHI37085 Sapria himalayana HOM05D001560 ORTHO05D004675 2.5e-28 129.4 69 88.4
SHI43258 Sapria himalayana HOM05D001560 ORTHO05D004675 2.5e-28 129.4 69 89.9
SHI53284 Sapria himalayana HOM05D001560 ORTHO05D004675 5.6e-28 128.3 69 87.0
Lalb_Chr00c21g0406161 Lupinus albus HOM05D001560 ORTHO05D004675 3.6e-27 125.6 102 67.6
SHI36016 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-26 124.0 79 75.9
Nitab4.5_0001152g0360 Nicotiana tabacum HOM05D001560 ORTHO05D004675 1.4e-26 123.6 108 62.0
ECA238G3729 Erigeron canadensis HOM05D001560 ORTHO05D004675 3.1e-26 122.5 66 86.4
SHI47572 Sapria himalayana HOM05D001560 ORTHO05D004675 4.0e-26 122.1 101 60.4
TPR.G20383 Trifolium pratense HOM05D001560 ORTHO05D004675 2.0e-25 119.8 64 87.5
PGSC0003DMG400020882 Solanum tuberosum HOM05D001560 ORTHO05D004675 1.3e-24 117.1 69 81.2
SHI35482 Sapria himalayana HOM05D001560 ORTHO05D003613 3.7e-24 115.5 68 79.4
TPR.G15690 Trifolium pratense HOM05D001560 ORTHO05D004675 2.1e-22 109.8 86 65.1
CsaV3_5G015950 Cucumis sativus L. HOM05D001560 ORTHO05D004675 3.9e-21 105.5 56 89.3
SHI35231 Sapria himalayana HOM05D001560 ORTHO05D004675 3.9e-21 105.5 61 83.6
Solyc01g020470.3 Solanum lycopersicum HOM05D001560 ORTHO05D004675 2.5e-20 102.8 102 56.9
SHI53856 Sapria himalayana HOM05D001560 ORTHO05D004675 3.3e-20 102.4 69 76.8
SHI33106 Sapria himalayana HOM05D000743 ORTHO05D000580 4.3e-20 102.1 59 84.7
Prupe.2G039100 Prunus persica HOM05D001560 ORTHO05D004675 2.8e-19 99.4 61 82.0
Os12g0422971 Oryza sativa ssp. japonica HOM05D001560 ORTHO05D004675 1.4e-18 97.1 56 82.1
Manes.01G049510 Manihot esculenta HOM05D001560 ORTHO05D004675 1.8e-18 96.7 47 91.5
Solyc08g029250.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 1.8e-18 96.7 101 55.4
Haze_26224 Corylus avellana HOM05D001560 ORTHO05D004675 2.0e-17 93.2 81 48.1
Peaxi162Scf00183g00815 Petunia axillaris HOM05D009956 ORTHO05D012211 2.0e-17 93.2 62 80.6
SHI37068 Sapria himalayana HOM05D001560 ORTHO05D004675 4.4e-17 92.0 56 75.0
SHI49835 Sapria himalayana HOM05D001560 ORTHO05D004675 7.6e-17 91.3 61 75.4
SHI50380 Sapria himalayana HOM05D001560 ORTHO05D004675 7.6e-17 91.3 61 75.4
Cre07.g327400 Chlamydomonas reinhardtii HOM05D001560 ORTHO05D004675 2.9e-16 89.4 89 44.9
SHI42241 Sapria himalayana HOM05D001560 ORTHO05D004675 1.3e-13 80.5 46 84.8
C01p34850 Brassica napus HOM05D001560 ORTHO05D004675 2.5e-12 76.3 36 97.2
Sopen00g002540 Solanum pennellii HOM05D001560 ORTHO05D004675 6.2e-11 71.6 37 91.9
Ca_22175_v3 Cicer arietinum L. HOM05D001560 ORTHO05D004675 2.4e-10 69.7 36 88.9
SMO053G0006 Selaginella moellendorffii HOM05D001560 ORTHO05D004675 5.2e-10 68.6 88 45.5
arahy.Tifrunner.gnm1.ann1.11DKXG Arachis hypogaea HOM05D001560 ORTHO05D004675 9.0e-10 67.8 32 96.9
arahy.Tifrunner.gnm1.ann1.E4X7TI Arachis hypogaea HOM05D001560 ORTHO05D004675 2.6e-09 66.2 31 96.8
ECA041G0003 Erigeron canadensis HOM05D001560 ORTHO05D004675 2.6e-09 66.2 40 80.0
CARHR287160 Cardamine hirsuta HOM05D001560 ORTHO05D004675 7.6e-09 64.7 30 96.7
PGSC0003DMG400018984 Solanum tuberosum HOM05D001560 ORTHO05D004675 7.6e-09 64.7 31 93.5
BraSC48t46315Z Brassica rapa HOM05D001560 ORTHO05D004675 9.9e-09 64.3 29 96.6
SHI26652 Sapria himalayana HOM05D001560 ORTHO05D004675 9.9e-09 64.3 30 96.7
BolC1t03442H Brassica oleracea HOM05D001560 ORTHO05D004675 1.3e-08 63.9 63 55.6
Dinv29327 Davidia involucrata HOM05D001560 ORTHO05D004675 1.7e-08 63.5 31 93.5
SHI45393 Sapria himalayana HOM05D001560 ORTHO05D004675 3.8e-08 62.4 55 58.2
CDE02G2746 Ceratophyllum demersum HOM05D001560 ORTHO05D004675 1.4e-07 60.5 37 78.4
C01p34750 Brassica napus HOM05D001560 ORTHO05D004675 4.2e-07 58.9 63 54.0
Nitab4.5_0003709g0080 Nicotiana tabacum HOM05D012582 ORTHO05D011721 7.1e-07 58.2 28 92.9
SHI36570 Sapria himalayana HOM05D001560 ORTHO05D004675 2.7e-06 56.2 81 43.2


User provided reference genes

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