Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 8.2e-307 1056.2 525 100.0
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 1.7e-280 968.8 489 98.0
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 1.5e-220 769.6 509 75.2
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 1.2e-217 760.0 505 75.4
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 1.4e-213 746.5 418 88.8
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 9.6e-199 697.2 498 70.7
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 1.8e-112 410.6 516 45.9
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 5.1e-107 392.5 505 44.8
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 4.3e-106 389.4 487 46.0
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 3.6e-105 386.3 510 44.1
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 6.2e-105 385.6 484 46.9
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 2.0e-103 380.6 498 44.2
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 2.0e-103 380.6 505 45.5
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 2.7e-100 370.2 470 45.5
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.8e-97 360.1 511 42.3
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 1.8e-96 357.5 496 43.3
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 9.0e-96 355.1 507 41.8
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 2.0e-95 354.0 497 41.6
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 5.8e-95 352.4 510 42.0
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 2.2e-94 350.5 532 40.0
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 2.1e-92 344.0 497 41.0
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 6.0e-92 342.4 506 40.9
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 8.7e-91 338.6 479 42.4
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 9.6e-90 335.1 469 42.0
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 2.8e-89 333.6 497 40.6
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.0e-86 325.1 500 39.2
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 6.5e-86 322.4 504 37.3
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 1.3e-81 308.1 514 37.5
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 4.8e-81 306.2 506 35.8
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 4.8e-81 306.2 503 38.0
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 6.3e-81 305.8 514 37.9
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 2.4e-80 303.9 491 38.9
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 5.9e-79 299.3 384 44.5
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 2.2e-78 297.4 502 37.6
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 6.5e-78 295.8 506 39.3
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 7.2e-77 292.4 495 37.0
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 2.1e-76 290.8 500 36.6
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 2.7e-76 290.4 502 36.1
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 7.9e-76 288.9 509 35.6
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.3e-75 288.1 502 37.6
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 2.3e-75 287.3 370 44.3
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 5.1e-75 286.2 502 35.3
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 8.7e-75 285.4 506 37.5
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 2.2e-73 280.8 511 35.4
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 4.8e-73 279.6 374 42.2
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 8.2e-73 278.9 529 34.2
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 6.9e-72 275.8 515 36.7
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.2e-71 275.0 524 35.5
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 3.4e-71 273.5 524 34.2
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 4.5e-71 273.1 513 35.5
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 4.5e-71 273.1 513 35.5
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 4.5e-71 273.1 507 34.9
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 3.8e-70 270.0 526 35.6
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 5.0e-70 269.6 504 35.5
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 6.5e-70 269.2 516 37.0
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 5.5e-69 266.2 504 33.9
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 7.2e-69 265.8 429 38.5
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 9.4e-69 265.4 390 41.5
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 1.6e-68 264.6 458 36.5
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 2.7e-68 263.8 474 35.4
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 3.6e-68 263.5 553 34.2
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 3.6e-68 263.5 426 37.1
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 7.9e-68 262.3 522 33.3
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 7.9e-68 262.3 483 35.4
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 1.0e-67 261.9 527 35.3
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 5.1e-67 259.6 538 33.8
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 2.6e-66 257.3 517 35.4
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 5.7e-66 256.1 505 33.1
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.3e-65 255.0 405 38.0
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 4.8e-65 253.1 512 33.8
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 1.4e-64 251.5 492 33.7
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 1.8e-64 251.1 517 34.6
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 5.3e-64 249.6 535 32.9
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 3.4e-63 246.9 530 33.6
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 7.7e-63 245.7 491 33.6
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 7.7e-63 245.7 428 36.0
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 2.9e-62 243.8 529 33.1
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 6.5e-62 242.7 398 36.7
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 1.1e-61 241.9 497 34.2
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 3.6e-60 236.9 437 35.5
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 4.7e-60 236.5 489 32.7
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 6.1e-60 236.1 491 31.6
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 7.9e-60 235.7 403 36.5
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 1.4e-59 235.0 406 37.9
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 1.8e-59 234.6 489 33.7
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 1.8e-59 234.6 480 34.0
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 1.8e-59 234.6 412 35.9
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 2.3e-59 234.2 453 33.6
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 3.0e-59 233.8 494 33.6
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 3.9e-59 233.4 403 37.2
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 8.8e-59 232.3 395 35.9
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 1.5e-58 231.5 404 36.9
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 2.6e-58 230.7 470 36.0
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 2.6e-58 230.7 267 47.6
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 2.6e-58 230.7 491 32.0
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 3.3e-58 230.3 398 35.7
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 3.3e-58 230.3 480 33.5
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 4.4e-58 229.9 500 31.6
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 4.4e-58 229.9 402 35.1
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 4.4e-58 229.9 504 32.3
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 5.7e-58 229.6 366 39.1
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 9.7e-58 228.8 482 33.6
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 1.3e-57 228.4 413 34.4
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 1.7e-57 228.0 482 32.6
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 2.2e-57 227.6 481 33.1
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 2.2e-57 227.6 464 32.3
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 2.8e-57 227.3 447 34.5
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 2.8e-57 227.3 497 31.0
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 3.7e-57 226.9 507 33.1
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.4e-56 224.9 499 32.1
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.4e-56 224.9 499 32.1
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 7.0e-56 222.6 479 32.2
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 2.0e-55 221.1 580 30.2
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 3.5e-55 220.3 485 32.0
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 3.8e-54 216.9 447 34.5
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 1.5e-53 214.9 250 46.0
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 2.5e-53 214.2 394 34.8
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 2.5e-53 214.2 436 31.7
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 7.2e-53 212.6 500 28.8
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 7.2e-53 212.6 471 30.8
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 3.6e-52 210.3 483 31.7
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 8.0e-52 209.1 486 28.6
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 2.3e-51 207.6 506 29.8
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 1.5e-50 204.9 263 44.9
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 9.7e-50 202.2 530 29.6
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 9.7e-50 202.2 492 32.3
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 9.7e-50 202.2 402 32.3
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.7e-49 201.4 412 33.7
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 1.4e-48 198.4 494 32.0
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 1.2e-47 195.3 522 29.7
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 2.0e-47 194.5 385 34.3
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 2.0e-47 194.5 255 45.5
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 2.7e-47 194.1 508 31.1
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 3.5e-47 193.7 496 31.2
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 4.5e-47 193.4 408 33.8
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 5.9e-47 193.0 489 31.5
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 7.7e-47 192.6 491 32.4
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.3e-46 191.8 462 32.0
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 6.5e-46 189.5 379 32.7
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 1.5e-45 188.3 389 32.6
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 7.0e-40 169.5 272 38.6
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 3.2e-37 160.6 388 28.4
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 4.4e-34 150.2 538 27.9
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 8.3e-33 146.0 398 29.9
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 2.3e-30 137.9 267 36.0
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 2.9e-30 137.5 277 30.7
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 6.6e-30 136.3 261 31.8
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 6.6e-30 136.3 483 24.6
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 8.6e-30 136.0 261 31.8
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.1e-29 135.6 263 30.4
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 1.9e-29 134.8 239 35.1
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 1.9e-29 134.8 260 33.5
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 1.6e-28 131.7 296 33.1
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 2.3e-27 127.9 281 29.2
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 5.7e-26 123.2 210 36.7
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 4.9e-25 120.2 223 36.3
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 7.0e-24 116.3 159 42.8
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 2.0e-23 114.8 276 28.6
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 1.0e-22 112.5 245 30.2
SGA_v2.0_scaffold187G40255 Striga asiatica HOM05D003538 ORTHO05D004376 2.3e-22 111.3 138 47.1
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 3.0e-22 110.9 257 28.8
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 3.9e-22 110.5 356 30.3
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 3.4e-18 97.4 228 29.8
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 5.4e-16 90.1 146 40.4
Lj7A278T10 Lonicera japonica HOM05D003538 ORTHO05D004376 1.6e-15 88.6 144 40.3
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 1.6e-15 88.6 190 31.6
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 1.7e-14 85.1 255 26.7
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 3.9e-14 84.0 85 42.4
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 1.1e-13 82.4 239 28.5
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 1.5e-13 82.0 190 31.1
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 3.3e-13 80.9 135 38.5
SEGI_10797 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 7.1e-08 63.2 155 29.7


User provided reference genes

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