Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 1.0e-103 380.2 202 100.0
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 1.0e-103 380.2 202 100.0
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.5e-102 375.6 202 98.5
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 4.0e-92 341.7 202 91.1
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.3e-90 336.7 202 90.1
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 2.8e-77 292.4 202 77.2
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 7.0e-73 277.7 191 75.9
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 7.0e-73 277.7 202 74.3
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 9.2e-73 277.3 203 75.4
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 1.6e-72 276.6 189 81.5
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 1.0e-71 273.9 202 71.3
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 6.6e-71 271.2 202 72.8
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 6.6e-71 271.2 197 72.6
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 6.6e-71 271.2 197 73.1
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 6.6e-71 271.2 203 71.9
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 6.6e-71 271.2 202 74.8
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 6.6e-71 271.2 202 74.8
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 6.6e-71 271.2 203 71.9
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 1.5e-70 270.0 202 70.8
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 1.9e-70 269.6 203 71.4
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 1.9e-70 269.6 203 71.4
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 2.5e-70 269.2 192 72.9
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 3.3e-70 268.9 187 75.4
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 3.3e-70 268.9 200 71.5
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 5.6e-70 268.1 155 87.7
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 5.6e-70 268.1 196 71.9
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 7.3e-70 267.7 201 71.1
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 7.3e-70 267.7 203 71.4
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 9.5e-70 267.3 203 71.9
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 2.1e-69 266.2 201 70.6
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 2.1e-69 266.2 202 72.3
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 2.8e-69 265.8 198 73.2
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 3.6e-69 265.4 204 69.1
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 3.6e-69 265.4 201 70.6
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 4.7e-69 265.0 201 70.6
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 4.7e-69 265.0 203 70.4
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 6.1e-69 264.6 161 82.6
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 8.0e-69 264.2 158 84.8
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 8.0e-69 264.2 202 70.8
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 8.0e-69 264.2 205 71.7
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 1.0e-68 263.8 204 71.1
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 1.4e-68 263.5 203 70.0
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 1.4e-68 263.5 202 70.3
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 2.3e-68 262.7 189 72.5
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 2.3e-68 262.7 194 71.6
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 5.2e-68 261.5 200 71.0
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 6.8e-68 261.2 202 69.8
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 8.9e-68 260.8 195 72.3
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 8.9e-68 260.8 202 69.3
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 1.2e-67 260.4 200 71.0
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 1.5e-67 260.0 202 70.8
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 1.5e-67 260.0 201 68.7
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 2.0e-67 259.6 203 69.0
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 2.6e-67 259.2 202 69.8
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 3.4e-67 258.8 179 76.0
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 3.4e-67 258.8 202 69.8
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 3.4e-67 258.8 202 69.3
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 3.4e-67 258.8 200 71.5
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 4.4e-67 258.5 200 69.5
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 7.5e-67 257.7 179 75.4
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 9.8e-67 257.3 202 68.8
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 9.8e-67 257.3 202 67.3
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 9.8e-67 257.3 199 68.3
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 2.2e-66 256.1 199 69.8
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 2.9e-66 255.8 205 68.8
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 4.9e-66 255.0 201 69.7
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 8.3e-66 254.2 203 67.0
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 8.3e-66 254.2 200 70.5
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 1.1e-65 253.8 200 69.0
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 1.4e-65 253.4 165 78.8
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 1.9e-65 253.1 201 68.7
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 2.4e-65 252.7 202 66.8
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 2.4e-65 252.7 212 67.5
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 2.4e-65 252.7 202 65.8
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 3.2e-65 252.3 196 68.4
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 3.2e-65 252.3 200 69.5
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 4.1e-65 251.9 187 73.8
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 7.0e-65 251.1 204 66.2
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 1.2e-64 250.4 200 68.5
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 3.5e-64 248.8 200 68.0
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 6.0e-64 248.1 171 76.0
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 1.0e-63 247.3 184 75.0
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 1.7e-63 246.5 172 73.8
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 2.3e-63 246.1 201 66.2
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 3.0e-63 245.7 204 65.2
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 5.0e-63 245.0 204 64.7
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 6.6e-63 244.6 163 75.5
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 6.6e-63 244.6 201 66.2
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 6.6e-63 244.6 187 70.1
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 8.6e-63 244.2 204 64.7
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 8.6e-63 244.2 156 78.2
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 1.1e-62 243.8 203 65.5
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 1.9e-62 243.0 193 66.8
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 2.5e-62 242.7 200 66.0
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 3.3e-62 242.3 153 81.7
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 4.3e-62 241.9 261 57.1
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 7.3e-62 241.1 200 66.5
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 7.3e-62 241.1 196 67.9
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 9.5e-62 240.7 209 64.1
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 9.5e-62 240.7 203 64.0
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 9.5e-62 240.7 200 66.0
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 2.8e-61 239.2 160 74.4
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 2.8e-61 239.2 202 65.8
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 2.8e-61 239.2 202 66.3
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 3.6e-61 238.8 190 69.5
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 4.7e-61 238.4 156 77.6
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 8.0e-61 237.7 176 71.0
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 1.1e-60 237.3 200 65.5
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 1.8e-60 236.5 162 74.1
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 1.5e-59 233.4 176 71.6
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 2.0e-59 233.0 203 66.0
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 7.5e-59 231.1 170 71.2
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 7.5e-59 231.1 200 65.5
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 2.2e-58 229.6 203 63.5
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 2.9e-58 229.2 205 60.5
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 2.4e-57 226.1 200 63.5
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 2.4e-57 226.1 200 65.0
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 1.5e-54 216.9 169 65.1
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 2.1e-53 213.0 180 63.9
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 2.1e-53 213.0 200 63.0
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 3.6e-53 212.2 178 66.3
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 1.8e-52 209.9 203 61.1
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 4.0e-52 208.8 178 64.6
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 4.0e-52 208.8 199 59.3
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.3e-50 203.8 187 64.7
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 1.1e-49 200.7 180 61.7
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 5.4e-49 198.4 132 79.5
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 6.6e-47 191.4 160 63.1
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 8.6e-47 191.0 150 68.7
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 2.5e-46 189.5 148 65.5
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 8.1e-45 184.5 202 56.4
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 1.4e-44 183.7 174 56.9
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 2.4e-44 183.0 202 55.9
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 4.0e-44 182.2 245 49.4
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 2.6e-43 179.5 147 66.0
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 9.9e-43 177.6 130 73.1
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 1.7e-42 176.8 111 77.5
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.2e-42 176.4 129 72.1
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.4e-41 172.9 130 71.5
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.2e-41 172.6 130 71.5
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 5.4e-41 171.8 104 80.8
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 7.8e-40 167.9 130 71.5
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 5.6e-38 161.8 196 50.0
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 9.6e-38 161.0 82 95.1
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 1.3e-37 160.6 169 55.6
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 1.4e-36 157.1 156 50.6
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 9.0e-36 154.5 158 47.5
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 7.6e-35 151.4 122 73.0
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 3.2e-33 146.0 155 50.3
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 7.8e-32 141.4 91 72.5
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 5.1e-31 138.7 144 47.2
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 1.1e-30 137.5 112 58.9
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 1.5e-30 137.1 140 46.4
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 3.3e-30 136.0 156 54.5
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 1.6e-21 107.1 86 69.8
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 8.1e-21 104.8 197 39.6
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 1.0e-15 87.8 58 70.7
SGA_v2.0_scaffold104G30259 Striga asiatica HOM05D004525 ORTHO05D005295 4.5e-11 72.4 176 40.9
TAR374G0495 Trochodendron aralioides HOM05D004525 ORTHO05D005295 8.4e-10 68.2 104 47.1
BcaB05g21931 Brassica carinata HOM05D004525 ORTHO05D005295 7.1e-09 65.1 91 48.4
Cre12.g556450 Chlamydomonas reinhardtii HOM05D004525 ORTHO05D005295 1.5e-06 57.4 138 29.7
SpUn0008_0090 Schrenkiella parvula HOM05D000004 ORTHO05D027095 2.5e-06 56.6 59 50.8


User provided reference genes

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