Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g061880.2 Solanum lycopersicum HOM05D005831 ORTHO05D007007 3.7e-48 194.5 95 100.0
Nitab4.5_0000446g0240 Nicotiana tabacum HOM05D005831 ORTHO05D007007 6.3e-16 87.4 60 78.3
Nitab4.5_0009773g0010 Nicotiana tabacum HOM05D005831 ORTHO05D007007 8.3e-16 87.0 60 78.3
CAN.G6.15 Capsicum annuum HOM05D005831 ORTHO05D007007 2.0e-14 82.4 58 75.9
Solyc04g080930.4 Solanum lycopersicum HOM05D005831 ORTHO05D007007 2.7e-14 82.0 61 75.4
Sopen04g034540 Solanum pennellii HOM05D005831 ORTHO05D007007 2.7e-14 82.0 61 75.4
PGSC0003DMG400003758 Solanum tuberosum HOM05D005831 ORTHO05D007007 2.7e-14 82.0 61 75.4
MSTRG.25981 Avicennia marina HOM05D005831 ORTHO05D007007 3.8e-13 78.2 60 70.0
Glyma.17G225600 Glycine max HOM05D005831 ORTHO05D007007 5.0e-13 77.8 63 68.3
Lj5g0001901 Lotus japonicus HOM05D005831 ORTHO05D007007 8.6e-13 77.0 60 66.7
Glyma.14G099100 Glycine max HOM05D005831 ORTHO05D007007 1.1e-12 76.6 63 66.7
Thecc.09G062000 Theobroma cacao HOM05D005831 ORTHO05D007007 1.1e-12 76.6 58 70.7
FvH4_2g31140 Fragaria vesca HOM05D005831 ORTHO05D007007 1.5e-12 76.3 59 66.1
FAN24G1737 Fragaria x ananassa HOM05D005831 ORTHO05D007007 1.5e-12 76.3 59 66.1
FAN27G2028 Fragaria x ananassa HOM05D005831 ORTHO05D007007 1.5e-12 76.3 59 66.1
Hma1.2p1_0231F.1_g097400 Hydrangea macrophylla HOM05D005831 ORTHO05D007007 1.5e-12 76.3 55 72.7
PSO210G0521 Papaver somniferum HOM05D005831 ORTHO05D007007 1.9e-12 75.9 59 72.9
PSO210G7793 Papaver somniferum HOM05D005831 ORTHO05D007007 1.9e-12 75.9 59 72.9
VMungo0647G0599 Vigna mungo HOM05D005831 ORTHO05D007007 2.5e-12 75.5 59 67.8
Atru.chr7.1858 Acer truncatum HOM05D005831 ORTHO05D007007 3.2e-12 75.1 56 69.6
Cpa.g.sc126.34 Carica papaya HOM05D005831 ORTHO05D007007 3.2e-12 75.1 58 69.0
COL.COLO4_21126 Corchorus olitorius HOM05D005831 ORTHO05D007007 3.2e-12 75.1 59 67.8
Phvul.001G039000 Phaseolus vulgaris HOM05D005831 ORTHO05D007007 3.2e-12 75.1 61 67.2
THA.LOC104806019 Tarenaya hassleriana HOM05D005831 ORTHO05D007007 3.2e-12 75.1 61 65.6
Gohir.D07G020000 Gossypium hirsutum HOM05D005831 ORTHO05D007007 4.2e-12 74.7 52 75.0
Gorai.001G020700 Gossypium raimondii HOM05D005831 ORTHO05D007007 4.2e-12 74.7 52 75.0
Potri.006G222000 Populus trichocarpa HOM05D005831 ORTHO05D007007 4.2e-12 74.7 57 68.4
GSVIVG01035453001 Vitis vinifera HOM05D005831 ORTHO05D007007 4.2e-12 74.7 59 72.9
Oeu027284.3 Olea europaea HOM05D005831 ORTHO05D007007 5.5e-12 74.3 65 66.2
RcHm_v2.0_Chr6g0311631 Rosa chinensis HOM05D005831 ORTHO05D007007 7.2e-12 73.9 52 71.2
arahy.Tifrunner.gnm1.ann1.2ULK6I Arachis hypogaea HOM05D005831 ORTHO05D007007 9.5e-12 73.6 55 69.1
ECA234G1597 Erigeron canadensis HOM05D005831 ORTHO05D007007 9.5e-12 73.6 56 66.1
Lalb_Chr09g0334801 Lupinus albus HOM05D005831 ORTHO05D007007 9.5e-12 73.6 58 65.5
Medtr1g015390 Medicago truncatula HOM05D005831 ORTHO05D007007 9.5e-12 73.6 58 67.2
CANSAT25G0005 Cannabis sativa HOM05D005831 ORTHO05D007007 1.2e-11 73.2 52 73.1
CiPaw.15G092600 Carya illinoinensis HOM05D005831 ORTHO05D007007 1.2e-11 73.2 68 63.2
Migut.A00086 Erythranthe guttata HOM05D005831 ORTHO05D007007 1.2e-11 73.2 63 65.1
MBI19_g11845_MAGBIO Magnolia biondii HOM05D005831 ORTHO05D007007 1.2e-11 73.2 63 61.9
DCAR_003715 Daucus carota HOM05D005831 ORTHO05D007007 1.6e-11 72.8 59 64.4
QL04p096581 Quercus lobata HOM05D005831 ORTHO05D007007 1.6e-11 72.8 61 67.2
Lsat_1_v5_gn_5_79500 Lactuca sativa HOM05D005831 ORTHO05D007007 2.1e-11 72.4 59 67.8
MD15G1051800 Malus domestica HOM05D005831 ORTHO05D007007 2.1e-11 72.4 63 63.5
Prupe.1G405700 Prunus persica HOM05D005831 ORTHO05D007007 2.1e-11 72.4 55 69.1
TWI38G0260 Tripterygium wilfordii HOM05D005831 ORTHO05D007007 2.1e-11 72.4 68 61.8
FAN15G1366 Fragaria x ananassa HOM05D005831 ORTHO05D007007 2.8e-11 72.0 51 72.5
Duzib150G1275 Durio zibethinus HOM05D005831 ORTHO05D007007 3.6e-11 71.6 59 64.4
Actinidia25695 Actinidia chinensis HOM05D005831 ORTHO05D007007 4.7e-11 71.2 55 69.1
A09p54720 Brassica napus HOM05D005831 ORTHO05D007007 4.7e-11 71.2 55 63.6
A09p55230 Brassica napus HOM05D005831 ORTHO05D007007 4.7e-11 71.2 55 63.6
BraA09t40881Z Brassica rapa HOM05D005831 ORTHO05D007007 4.7e-11 71.2 55 63.6
BraA09t40930Z Brassica rapa HOM05D005831 ORTHO05D007007 4.7e-11 71.2 55 63.6
Cc08_g01270 Coffea canephora HOM05D005831 ORTHO05D007007 4.7e-11 71.2 66 62.1
Manes.03G052700 Manihot esculenta HOM05D005831 ORTHO05D007007 4.7e-11 71.2 60 68.3
TPR.G10653 Trifolium pratense HOM05D005831 ORTHO05D007007 4.7e-11 71.2 61 67.2
Aa31LG5G18500 Aethionema arabicum HOM05D005831 ORTHO05D007007 6.1e-11 70.9 56 64.3
CSS0021293 Camellia sinensis var. sinensis HOM05D005831 ORTHO05D007007 6.1e-11 70.9 56 66.1
Rhsim03G0040100 Rhododendron simsii HOM05D005831 ORTHO05D007007 6.1e-11 70.9 52 71.2
SGA_v2.0_scaffold64G21865 Striga asiatica HOM05D005831 ORTHO05D007007 6.1e-11 70.9 56 66.1
Ca_13107_v3 Cicer arietinum L. HOM05D005831 ORTHO05D007007 8.0e-11 70.5 62 66.1
HanXRQChr12g0359011 Helianthus annuus HOM05D005831 ORTHO05D007007 8.0e-11 70.5 60 63.3
MD08G1070400 Malus domestica HOM05D005831 ORTHO05D007007 8.0e-11 70.5 59 66.1
Peaxi162Scf00101g01522 Petunia axillaris HOM05D005831 ORTHO05D007007 8.0e-11 70.5 48 77.1
SalBow4G2055 Salvia bowleyana HOM05D005831 ORTHO05D001900 8.0e-11 70.5 59 62.7
Aqoxy2G00096 Aquilegia oxysepala HOM05D005831 ORTHO05D007007 1.0e-10 70.1 61 60.7
TWI15G0825 Tripterygium wilfordii HOM05D005831 ORTHO05D007007 1.0e-10 70.1 68 60.3
AL4G18970 Arabidopsis lyrata HOM05D005831 ORTHO05D007007 1.4e-10 69.7 51 66.7
AT2G26350 Arabidopsis thaliana HOM05D005831 ORTHO05D007007 1.4e-10 69.7 51 66.7
BcaC07g40824 Brassica carinata HOM05D005831 ORTHO05D007007 1.4e-10 69.7 51 66.7
C08p38160 Brassica napus HOM05D005831 ORTHO05D007007 1.4e-10 69.7 51 66.7
BolC8t51391H Brassica oleracea HOM05D005831 ORTHO05D007007 1.4e-10 69.7 51 66.7
PGR004G2090 Punica granatum HOM05D005831 ORTHO05D007007 1.4e-10 69.7 52 71.2
CDE06G1722 Ceratophyllum demersum HOM05D005831 ORTHO05D007007 1.8e-10 69.3 59 61.0
ClCG05G015690 Citrullus lanatus HOM05D005831 ORTHO05D007007 1.8e-10 69.3 51 70.6
MELO3C016909.2 Cucumis melo HOM05D005831 ORTHO05D007007 1.8e-10 69.3 51 70.6
CsaV3_4G036010 Cucumis sativus L. HOM05D005831 ORTHO05D007007 1.8e-10 69.3 51 70.6
Eucgr.C03149 Eucalyptus grandis HOM05D005831 ORTHO05D007007 1.8e-10 69.3 64 64.1
Nn8g38706 Nelumbo nucifera HOM05D005831 ORTHO05D007007 1.8e-10 69.3 52 69.2
Sabra06G0171700 Salix brachista HOM05D005831 ORTHO05D007007 1.8e-10 69.3 52 69.2
BcaB08g35248 Brassica carinata HOM05D005831 ORTHO05D007007 2.3e-10 68.9 48 68.8
Haze_18115 Corylus avellana HOM05D005831 ORTHO05D007007 2.3e-10 68.9 67 58.2
vmacro07801 Vaccinium macrocarpon HOM05D005831 ORTHO05D007007 3.0e-10 68.6 52 67.3
Ciclev10025877m.g Citrus clementina HOM05D005831 ORTHO05D007007 4.0e-10 68.2 52 67.3
Sp4g07000 Schrenkiella parvula HOM05D005831 ORTHO05D007007 4.0e-10 68.2 51 64.7
unitig_748.g8240 Utricularia gibba HOM05D005831 ORTHO05D007007 4.0e-10 68.2 61 63.9
ATR0598G074 Amborella trichopoda HOM05D005831 ORTHO05D007007 5.2e-10 67.8 50 70.0
Carub.0004s0626 Capsella rubella HOM05D005831 ORTHO05D007007 5.2e-10 67.8 51 62.7
Thhalv10002014m.g Eutrema salsugineum HOM05D005831 ORTHO05D007007 5.2e-10 67.8 48 68.8
Aqoxy3G01546 Aquilegia oxysepala HOM05D005831 ORTHO05D007007 6.8e-10 67.4 58 62.1
FAN20G1335 Fragaria x ananassa HOM05D001583 ORTHO05D007007 1.2e-09 66.6 89 44.9
Sed0012871 Sechium edule HOM05D005831 ORTHO05D007007 1.2e-09 66.6 51 66.7
Cfa018014 Carpinus fangiana HOM05D005831 ORTHO05D007007 3.4e-09 65.1 62 59.7
SEGI_09068 Sequoiadendron giganteum HOM05D005831 ORTHO05D007007 5.7e-09 64.3 57 61.4
Os07g0608800 Oryza sativa ssp. japonica HOM05D005831 ORTHO05D007007 7.5e-09 63.9 48 70.8
Aqoxy3G01853 Aquilegia oxysepala HOM05D005831 ORTHO05D007007 1.7e-08 62.8 59 61.0
Sc09g0010090 Simmondsia chinensis HOM05D005831 ORTHO05D007007 2.2e-08 62.4 64 56.2
arahy.Tifrunner.gnm1.ann1.12X2WP Arachis hypogaea HOM05D005831 ORTHO05D007007 6.3e-08 60.8 45 68.9
AUR62009089 Chenopodium quinoa HOM05D005831 ORTHO05D007007 2.4e-07 58.9 50 62.0
AUR62020581 Chenopodium quinoa HOM05D005831 ORTHO05D007007 2.4e-07 58.9 50 62.0
Lj2A627G34 Lonicera japonica HOM05D005831 ORTHO05D007007 2.4e-07 58.9 65 56.9
arahy.Tifrunner.gnm1.ann1.FV9EQX Arachis hypogaea HOM05D005831 ORTHO05D007007 5.4e-07 57.8 40 67.5
EL10Ac2g03793 Beta vulgaris HOM05D005831 ORTHO05D007007 9.2e-07 57.0 50 60.0
TAR383G0824 Trochodendron aralioides HOM05D005831 ORTHO05D007007 2.7e-06 55.5 41 70.7
Mapoly0029s0064 Marchantia polymorpha HOM05D005831 ORTHO05D007007 3.5e-06 55.1 64 50.0


User provided reference genes

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