Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g048315.1 Solanum lycopersicum HOM05D000748 ORTHO05D000394 1.0e-61 240.0 124 100.0
Oeu019137.1 Olea europaea HOM05D000748 ORTHO05D000394 4.5e-14 81.6 110 36.4
MD17G1240500 Malus domestica HOM05D000748 ORTHO05D000394 2.2e-13 79.3 109 39.4
Actinidia11035 Actinidia chinensis HOM05D000748 ORTHO05D000394 3.8e-13 78.6 107 34.6
MD09G1247600 Malus domestica HOM05D000748 ORTHO05D000394 3.8e-13 78.6 109 38.5
Cpa.g.sc34.161 Carica papaya HOM05D000748 ORTHO05D000394 6.5e-13 77.8 109 38.5
ClCG07G002920 Citrullus lanatus HOM05D000748 ORTHO05D000394 8.5e-13 77.4 109 38.5
TPR.G27502 Trifolium pratense HOM05D000748 ORTHO05D000394 8.5e-13 77.4 109 37.6
TAR629G2208 Trochodendron aralioides HOM05D000748 ORTHO05D000394 1.5e-12 76.6 109 38.5
Manes.12G089370 Manihot esculenta HOM05D000748 ORTHO05D000394 1.9e-12 76.3 109 35.8
TPR.G24161 Trifolium pratense HOM05D000748 ORTHO05D000394 1.9e-12 76.3 109 36.7
CSS0009741 Camellia sinensis var. sinensis HOM05D000748 ORTHO05D000394 2.5e-12 75.9 112 36.6
CsaV3_7G004420 Cucumis sativus L. HOM05D000748 ORTHO05D000394 2.5e-12 75.9 109 38.5
Medtr0004s0210 Medicago truncatula HOM05D000748 ORTHO05D000394 3.2e-12 75.5 109 36.7
C09p02900 Brassica napus HOM05D000748 ORTHO05D000394 4.2e-12 75.1 109 38.5
BolC9t53215H Brassica oleracea HOM05D000748 ORTHO05D000394 4.2e-12 75.1 109 38.5
MELO3C018737.2 Cucumis melo HOM05D000748 ORTHO05D000394 4.2e-12 75.1 109 37.6
Sed0012708 Sechium edule HOM05D000748 ORTHO05D000394 4.2e-12 75.1 109 36.7
SGA_v2.0_scaffold40G15636 Striga asiatica HOM05D015389 ORTHO05D000394 4.2e-12 75.1 93 39.8
AT4G03540 Arabidopsis thaliana HOM05D000748 ORTHO05D000394 7.2e-12 74.3 109 37.6
AL6G49360 Arabidopsis lyrata HOM05D000748 ORTHO05D000394 9.4e-12 73.9 109 37.6
BcaB01g01904 Brassica carinata HOM05D000748 ORTHO05D000394 9.4e-12 73.9 109 37.6
A09p02820 Brassica napus HOM05D000748 ORTHO05D000394 9.4e-12 73.9 109 37.6
BraA09t35923Z Brassica rapa HOM05D000748 ORTHO05D000394 9.4e-12 73.9 109 37.6
QL08p038716 Quercus lobata HOM05D000748 ORTHO05D000394 9.4e-12 73.9 109 37.6
Oeu052534.1 Olea europaea HOM05D000748 ORTHO05D000394 1.2e-11 73.6 106 33.0
Sc12g0003060 Simmondsia chinensis HOM05D000748 ORTHO05D000394 1.2e-11 73.6 107 37.4
BolC5t28984H Brassica oleracea HOM05D000748 ORTHO05D000394 1.6e-11 73.2 109 34.9
Lalb_Chr03g0029451 Lupinus albus HOM05D000748 ORTHO05D000394 1.6e-11 73.2 108 36.1
BcaB02g06910 Brassica carinata HOM05D000748 ORTHO05D000394 2.1e-11 72.8 109 34.9
A10p02200 Brassica napus HOM05D000748 ORTHO05D000394 2.1e-11 72.8 109 34.9
CARHR251970 Cardamine hirsuta HOM05D000748 ORTHO05D000394 2.1e-11 72.8 109 36.7
MBI07_g12790_MAGBIO Magnolia biondii HOM05D000748 ORTHO05D000394 2.1e-11 72.8 108 39.8
MBI07_g32534_MAGBIO Magnolia biondii HOM05D000748 ORTHO05D000394 2.1e-11 72.8 108 39.8
MBI07_g32647_MAGBIO Magnolia biondii HOM05D000748 ORTHO05D000394 2.1e-11 72.8 108 39.8
CARHR003030 Cardamine hirsuta HOM05D000748 ORTHO05D000394 2.7e-11 72.4 109 34.9
COL.COLO4_30183 Corchorus olitorius HOM05D000748 ORTHO05D000394 2.7e-11 72.4 109 38.5
Dinv23641 Davidia involucrata HOM05D000748 ORTHO05D000394 2.7e-11 72.4 108 38.0
Thhalv10029027m.g Eutrema salsugineum HOM05D000748 ORTHO05D000394 2.7e-11 72.4 109 36.7
TAR624G1116 Trochodendron aralioides HOM05D000748 ORTHO05D000394 2.7e-11 72.4 108 37.0
Aa31LG1G21000 Aethionema arabicum HOM05D000748 ORTHO05D000394 3.6e-11 72.0 109 33.9
Carub.0001s0280 Capsella rubella HOM05D000748 ORTHO05D000394 3.6e-11 72.0 109 34.9
Carub.0006s3353 Capsella rubella HOM05D000748 ORTHO05D000394 3.6e-11 72.0 109 36.7
Thhalv10009824m.g Eutrema salsugineum HOM05D000748 ORTHO05D000394 3.6e-11 72.0 109 34.9
Sp6g03550 Schrenkiella parvula HOM05D000748 ORTHO05D000394 3.6e-11 72.0 109 36.7
AL1G13190 Arabidopsis lyrata HOM05D000748 ORTHO05D000394 4.7e-11 71.6 109 34.9
AT1G03700 Arabidopsis thaliana HOM05D000748 ORTHO05D000394 4.7e-11 71.6 109 34.9
Cfa014614 Carpinus fangiana HOM05D000748 ORTHO05D000394 4.7e-11 71.6 109 38.5
Rhsim06G0142200 Rhododendron simsii HOM05D000748 ORTHO05D000394 4.7e-11 71.6 108 38.0
Migut.L00943 Erythranthe guttata HOM05D015389 ORTHO05D000394 6.1e-11 71.2 108 31.5
Sp1g02580 Schrenkiella parvula HOM05D000748 ORTHO05D000394 6.1e-11 71.2 109 34.9
Sc21g0002840 Simmondsia chinensis HOM05D000748 ORTHO05D000394 6.1e-11 71.2 108 38.0
Haze_13159 Corylus avellana HOM05D000748 ORTHO05D000394 8.0e-11 70.9 109 37.6
RcHm_v2.0_Chr5g0008311 Rosa chinensis HOM05D000748 ORTHO05D000394 8.0e-11 70.9 111 34.2
Thecc.02G179400 Theobroma cacao HOM05D000748 ORTHO05D000394 8.0e-11 70.9 109 38.5
TWI36G1695 Tripterygium wilfordii HOM05D000748 ORTHO05D000394 8.0e-11 70.9 108 38.9
Aqoxy1G02433 Aquilegia oxysepala HOM05D000748 ORTHO05D000394 1.0e-10 70.5 107 37.4
Duzib106G1717 Durio zibethinus HOM05D000748 ORTHO05D000394 1.0e-10 70.5 109 37.6
Lj3g0007355 Lotus japonicus HOM05D000748 ORTHO05D000394 1.0e-10 70.5 109 34.9
Prupe.3G137700 Prunus persica HOM05D000748 ORTHO05D000394 1.0e-10 70.5 108 35.2
Sabra13G0111200 Salix brachista HOM05D000748 ORTHO05D000394 1.0e-10 70.5 110 35.5
Sabra19G0110700 Salix brachista HOM05D000748 ORTHO05D000394 1.0e-10 70.5 110 34.5
Sabra19G0112100 Salix brachista HOM05D000748 ORTHO05D000394 1.0e-10 70.5 110 34.5
CiPaw.03G177000 Carya illinoinensis HOM05D000748 ORTHO05D000394 1.4e-10 70.1 106 35.8
FvH4_3g09260 Fragaria vesca HOM05D000748 ORTHO05D000394 1.8e-10 69.7 108 34.3
FAN21G1875 Fragaria x ananassa HOM05D000748 ORTHO05D000394 2.3e-10 69.3 108 34.3
Hma1.2p1_0785F.1_g217550 Hydrangea macrophylla HOM05D000748 ORTHO05D000394 2.3e-10 69.3 110 32.7
Psat7g189720 Pisum sativum HOM05D000748 ORTHO05D000394 2.3e-10 69.3 109 34.9
Prupe.4G046800 Prunus persica HOM05D000748 ORTHO05D000394 4.0e-10 68.6 108 35.2
GSVIVG01020544001 Vitis vinifera HOM05D000748 ORTHO05D000394 4.0e-10 68.6 100 40.0
arahy.Tifrunner.gnm1.ann1.UQN5NZ Arachis hypogaea HOM05D000748 ORTHO05D000394 5.2e-10 68.2 109 35.8
Actinidia07583 Actinidia chinensis HOM05D000748 ORTHO05D000394 6.8e-10 67.8 110 35.5
Aa31LG5G2920 Aethionema arabicum HOM05D000748 ORTHO05D000394 6.8e-10 67.8 108 35.2
Migut.L00939 Erythranthe guttata HOM05D015389 ORTHO05D000394 8.8e-10 67.4 108 30.6
Migut.O00489 Erythranthe guttata HOM05D015389 ORTHO05D000394 8.8e-10 67.4 108 30.6
FAN16G1836 Fragaria x ananassa HOM05D000748 ORTHO05D000394 8.8e-10 67.4 108 33.3
Lj1A1206T66 Lonicera japonica HOM05D000748 ORTHO05D000394 8.8e-10 67.4 110 34.5
PGR142G2985 Punica granatum HOM05D000748 ORTHO05D000394 1.2e-09 67.0 107 37.4
THA.LOC104815961 Tarenaya hassleriana HOM05D000748 ORTHO05D000394 1.2e-09 67.0 109 33.9
arahy.Tifrunner.gnm1.ann1.BEAG7X Arachis hypogaea HOM05D000748 ORTHO05D000394 1.5e-09 66.6 109 35.8
CANSAT80G2769 Cannabis sativa HOM05D000748 ORTHO05D000394 2.0e-09 66.2 109 35.8
Potri.019G100300 Populus trichocarpa HOM05D000748 ORTHO05D000394 2.0e-09 66.2 110 34.5
Eucgr.K01023 Eucalyptus grandis HOM05D000748 ORTHO05D000394 2.6e-09 65.9 107 35.5
Potri.013G131700 Populus trichocarpa HOM05D000748 ORTHO05D000394 2.6e-09 65.9 110 33.6
Migut.K01187 Erythranthe guttata HOM05D015389 ORTHO05D000394 3.4e-09 65.5 108 30.6
Hma1.2p1_0126F.1_g059420 Hydrangea macrophylla HOM05D000748 ORTHO05D000394 3.4e-09 65.5 108 32.4
TWI63G0527 Tripterygium wilfordii HOM05D000748 ORTHO05D000394 3.4e-09 65.5 107 35.5
DCAR_028069 Daucus carota HOM05D000748 ORTHO05D000394 4.4e-09 65.1 110 31.8
Thecc.06G188200 Theobroma cacao HOM05D000748 ORTHO05D000394 4.4e-09 65.1 106 33.0
BraA10t42488Z Brassica rapa HOM05D000748 ORTHO05D000394 7.5e-09 64.3 120 31.7
Gohir.A09G216900 Gossypium hirsutum HOM05D000748 ORTHO05D000394 7.5e-09 64.3 109 34.9
Gohir.D09G219300 Gossypium hirsutum HOM05D000748 ORTHO05D000394 7.5e-09 64.3 109 34.9
MD10G1295200 Malus domestica HOM05D000748 ORTHO05D000394 7.5e-09 64.3 108 33.3
Gorai.006G240300 Gossypium raimondii HOM05D000748 ORTHO05D000394 9.8e-09 63.9 108 35.2
MD05G1313000 Malus domestica HOM05D000748 ORTHO05D000394 9.8e-09 63.9 108 33.3
COL.COLO4_31477 Corchorus olitorius HOM05D003185 ORTHO05D009915 1.3e-08 63.5 106 32.1
Migut.O00422 Erythranthe guttata HOM05D015389 ORTHO05D000394 1.3e-08 63.5 108 29.6
Nn1g04081 Nelumbo nucifera HOM05D000748 ORTHO05D000394 1.7e-08 63.2 108 34.3
EL10Ac8g20380 Beta vulgaris HOM05D000748 ORTHO05D000394 2.2e-08 62.8 106 30.2
Duzib235G0591 Durio zibethinus HOM05D000748 ORTHO05D000394 2.2e-08 62.8 106 31.1
Glyma.06G292900 Glycine max HOM05D000748 ORTHO05D000394 2.8e-08 62.4 109 33.0
Glyma.12G113100 Glycine max HOM05D000748 ORTHO05D000394 2.8e-08 62.4 109 32.1
PGSC0003DMG400029690 Solanum tuberosum HOM05D000748 ORTHO05D000394 2.8e-08 62.4 110 31.8
Hund21225 Selenicereus undatus HOM05D000748 ORTHO05D000394 4.9e-08 61.6 106 33.0
vmacro12302 Vaccinium macrocarpon HOM05D000748 ORTHO05D000394 4.9e-08 61.6 106 35.8
Dinv40554 Davidia involucrata HOM05D000748 ORTHO05D000394 6.3e-08 61.2 110 30.9
FAN11G2697 Fragaria x ananassa HOM05D000748 ORTHO05D000394 6.3e-08 61.2 82 37.8
VMungo1127G0579 Vigna mungo HOM05D000748 ORTHO05D000394 6.3e-08 61.2 109 33.0
Sopen02g023110 Solanum pennellii HOM05D000748 ORTHO05D000394 8.3e-08 60.8 110 30.9
Atru.chr10.1886 Acer truncatum HOM05D000748 ORTHO05D000394 1.1e-07 60.5 108 34.3
Phvul.011G114000 Phaseolus vulgaris HOM05D000748 ORTHO05D000394 1.1e-07 60.5 109 32.1
Rhsim02G0129000 Rhododendron simsii HOM05D000748 ORTHO05D000394 1.1e-07 60.5 106 36.8
VMungo0251G0082 Vigna mungo HOM05D000748 ORTHO05D000394 1.1e-07 60.5 108 34.3
Migut.L00950 Erythranthe guttata HOM05D015389 ORTHO05D000394 1.4e-07 60.1 108 28.7
Peaxi162Scf00059g01920 Petunia axillaris HOM05D000748 ORTHO05D000394 1.8e-07 59.7 104 32.7
Sabra17G0077900 Salix brachista HOM05D000748 ORTHO05D000394 1.8e-07 59.7 107 32.7
CiPaw.10G048100 Carya illinoinensis HOM05D000748 ORTHO05D000394 2.4e-07 59.3 100 32.0
Gorai.009G169800 Gossypium raimondii HOM05D000748 ORTHO05D000394 4.1e-07 58.5 106 30.2
Nitab4.5_0010762g0030 Nicotiana tabacum HOM05D000748 ORTHO05D000394 4.1e-07 58.5 110 30.9
Migut.L00951 Erythranthe guttata HOM05D015389 ORTHO05D000394 5.4e-07 58.2 92 29.3
AUR62014819 Chenopodium quinoa HOM05D000748 ORTHO05D000394 7.0e-07 57.8 106 31.1
Nitab4.5_0003432g0060 Nicotiana tabacum HOM05D000748 ORTHO05D000394 7.0e-07 57.8 110 30.9
QL04p021564 Quercus lobata HOM05D000748 ORTHO05D000394 7.0e-07 57.8 107 30.8
Solyc02g078250.4 Solanum lycopersicum HOM05D000748 ORTHO05D000394 7.0e-07 57.8 110 30.0
PGR004G1146 Punica granatum HOM05D000748 ORTHO05D000394 9.2e-07 57.4 106 34.0
Migut.H01488 Erythranthe guttata HOM05D000748 ORTHO05D000394 1.2e-06 57.0 110 30.0
Gohir.A05G161800 Gossypium hirsutum HOM05D000748 ORTHO05D000394 1.2e-06 57.0 106 30.2
Gohir.D05G164600 Gossypium hirsutum HOM05D000748 ORTHO05D000394 1.2e-06 57.0 106 29.2
Peaxi162Scf00661g00521 Petunia axillaris HOM05D000748 ORTHO05D000394 1.2e-06 57.0 110 30.0
Potri.017G088100 Populus trichocarpa HOM05D000748 ORTHO05D000394 1.2e-06 57.0 107 33.6
Nn1g06561 Nelumbo nucifera HOM05D000748 ORTHO05D000394 1.6e-06 56.6 95 33.7
AUR62017014 Chenopodium quinoa HOM05D000748 ORTHO05D000394 2.0e-06 56.2 106 31.1
HPP92_003877 Vanilla planifolia HOM05D000748 ORTHO05D000394 2.7e-06 55.8 107 33.6
HPP92_003887 Vanilla planifolia HOM05D000748 ORTHO05D000394 2.7e-06 55.8 107 33.6
Thecc.09G087200 Theobroma cacao HOM05D000748 ORTHO05D000394 3.5e-06 55.5 110 29.1
Hma1.2p1_0002F.1_g001860 Hydrangea macrophylla HOM05D000748 ORTHO05D000394 4.5e-06 55.1 101 35.6
Hma1.2p1_1201F.1_g266543 Hydrangea macrophylla HOM05D000748 ORTHO05D000394 4.5e-06 55.1 101 35.6
Os05g0245300 Oryza sativa ssp. japonica HOM05D000748 ORTHO05D000394 4.5e-06 55.1 102 29.4
Potri.004G043300 Populus trichocarpa HOM05D000748 ORTHO05D000394 5.9e-06 54.7 108 27.8
CANSAT35G1994 Cannabis sativa HOM05D000748 ORTHO05D000394 7.7e-06 54.3 108 28.7
Dinv26417 Davidia involucrata HOM05D000748 ORTHO05D000394 7.7e-06 54.3 74 40.5


User provided reference genes

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