Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g048070.1 Solanum lycopersicum HOM05D003862 ORTHO05D004398 8.5e-31 136.3 68 100.0
CAN.G1195.10 Capsicum annuum HOM05D003862 ORTHO05D004398 4.2e-22 107.5 67 80.6
AUR62038108 Chenopodium quinoa HOM05D003862 ORTHO05D004398 4.2e-22 107.5 67 79.1
Solyc10g086510.2 Solanum lycopersicum HOM05D003862 ORTHO05D004398 4.2e-22 107.5 67 80.6
Sopen10g035890 Solanum pennellii HOM05D003862 ORTHO05D004398 4.2e-22 107.5 67 80.6
PGSC0003DMG400019201 Solanum tuberosum HOM05D003862 ORTHO05D004398 4.2e-22 107.5 67 80.6
Ah.02g115390 Amaranthus hybridus HOM05D003862 ORTHO05D004398 5.5e-22 107.1 67 79.1
Nitab4.5_0000349g0310 Nicotiana tabacum HOM05D003862 ORTHO05D004398 7.2e-22 106.7 67 77.6
Nitab4.5_0001911g0090 Nicotiana tabacum HOM05D003862 ORTHO05D004398 7.2e-22 106.7 67 77.6
EL10Ac5g11591 Beta vulgaris HOM05D003862 ORTHO05D004398 9.4e-22 106.3 67 77.6
Migut.D00467 Erythranthe guttata HOM05D003862 ORTHO05D004398 9.4e-22 106.3 67 77.6
Lsat_1_v5_gn_4_177081 Lactuca sativa HOM05D003862 ORTHO05D004398 9.4e-22 106.3 67 77.6
Lsat_1_v5_gn_5_170681 Lactuca sativa HOM05D003862 ORTHO05D004398 9.4e-22 106.3 67 77.6
Hund10643 Selenicereus undatus HOM05D003862 ORTHO05D004398 9.4e-22 106.3 67 77.6
vmacro20157 Vaccinium macrocarpon HOM05D003862 ORTHO05D004398 1.2e-21 105.9 67 76.1
AUR62025808 Chenopodium quinoa HOM05D003862 ORTHO05D004398 1.6e-21 105.5 67 77.6
Os12g0571200 Oryza sativa ssp. japonica HOM05D003862 ORTHO05D004398 1.6e-21 105.5 67 74.6
Peaxi162Scf00330g00415 Petunia axillaris HOM05D003862 ORTHO05D004398 1.6e-21 105.5 67 76.1
TAR636G2804 Trochodendron aralioides HOM05D003862 ORTHO05D004398 2.1e-21 105.1 67 74.6
DCAR_030095 Daucus carota HOM05D003862 ORTHO05D004398 2.7e-21 104.8 67 74.6
SalBow5G2575 Salvia bowleyana HOM05D003862 ORTHO05D004398 2.7e-21 104.8 67 74.6
unitig_21.g20465 Utricularia gibba HOM05D003164 ORTHO05D003575 2.7e-21 104.8 67 74.6
GSVIVG01034172001 Vitis vinifera HOM05D003862 ORTHO05D004398 2.7e-21 104.8 67 76.1
Cc10_g12100 Coffea canephora HOM05D003862 ORTHO05D004398 3.6e-21 104.4 67 74.6
Migut.D01636 Erythranthe guttata HOM05D003862 ORTHO05D004398 3.6e-21 104.4 67 76.1
unitig_744.g24379 Utricularia gibba HOM05D003862 ORTHO05D004398 3.6e-21 104.4 67 74.6
CSS0028919 Camellia sinensis var. sinensis HOM05D003862 ORTHO05D004398 6.1e-21 103.6 67 73.1
CSS0038231 Camellia sinensis var. sinensis HOM05D003862 ORTHO05D004398 6.1e-21 103.6 67 73.1
Hma1.2p1_0936F.1_g238710 Hydrangea macrophylla HOM05D003862 ORTHO05D004398 6.1e-21 103.6 67 74.6
Hma1.2p1_1513F.1_g287975 Hydrangea macrophylla HOM05D003862 ORTHO05D004398 6.1e-21 103.6 67 74.6
Oeu014415.1 Olea europaea HOM05D003862 ORTHO05D004398 6.1e-21 103.6 67 73.1
Oeu032100.1 Olea europaea HOM05D003862 ORTHO05D004398 6.1e-21 103.6 67 73.1
HPP92_018126 Vanilla planifolia HOM05D003862 ORTHO05D004398 6.1e-21 103.6 67 74.6
HPP92_018144 Vanilla planifolia HOM05D003862 ORTHO05D004398 6.1e-21 103.6 67 74.6
HanXRQChr05g0136091 Helianthus annuus HOM05D003862 ORTHO05D004398 8.0e-21 103.2 67 73.1
CDE07G2069 Ceratophyllum demersum HOM05D003862 ORTHO05D004398 1.0e-20 102.8 67 73.1
Sc05g0009640 Simmondsia chinensis HOM05D003862 ORTHO05D004398 1.0e-20 102.8 67 76.1
PSO063G5647 Papaver somniferum HOM05D003862 ORTHO05D004398 2.3e-20 101.7 67 71.6
PSO339G2698 Papaver somniferum HOM05D003862 ORTHO05D004398 2.3e-20 101.7 67 71.6
PSO384G2795 Papaver somniferum HOM05D003862 ORTHO05D004398 2.3e-20 101.7 67 71.6
Peaxi162Scf01517g00013 Petunia axillaris HOM05D003862 ORTHO05D004398 2.3e-20 101.7 67 71.6
Sed0018689 Sechium edule HOM05D003862 ORTHO05D004398 2.3e-20 101.7 67 73.1
TAR369G0814 Trochodendron aralioides HOM05D003862 ORTHO05D004398 2.3e-20 101.7 67 71.6
ECA248G1530 Erigeron canadensis HOM05D003862 ORTHO05D004398 3.0e-20 101.3 67 73.1
Prupe.6G077400 Prunus persica HOM05D003862 ORTHO05D004398 3.0e-20 101.3 67 73.1
GSVIVG01024961001 Vitis vinifera HOM05D003862 ORTHO05D004398 3.0e-20 101.3 67 71.6
ClCG10G021140 Citrullus lanatus HOM05D003862 ORTHO05D004398 4.0e-20 100.9 67 73.1
MELO3C009258.2 Cucumis melo HOM05D003862 ORTHO05D004398 4.0e-20 100.9 67 73.1
CsaV3_3G034900 Cucumis sativus L. HOM05D003862 ORTHO05D004398 4.0e-20 100.9 67 73.1
Hund04959 Selenicereus undatus HOM05D003862 ORTHO05D004398 4.0e-20 100.9 67 73.1
CANSAT54G2947 Cannabis sativa HOM05D003862 ORTHO05D004398 5.2e-20 100.5 67 71.6
Lj3g0018643 Lotus japonicus HOM05D003862 ORTHO05D004398 5.2e-20 100.5 67 71.6
Lalb_Chr19g0137831 Lupinus albus HOM05D003862 ORTHO05D004398 5.2e-20 100.5 67 71.6
Prupe.6G255300 Prunus persica HOM05D003862 ORTHO05D004398 5.2e-20 100.5 67 74.6
Cfa017379 Carpinus fangiana HOM05D003862 ORTHO05D004398 6.8e-20 100.1 67 71.6
Haze_20791 Corylus avellana HOM05D003862 ORTHO05D004398 6.8e-20 100.1 67 71.6
Dinv17003 Davidia involucrata HOM05D003862 ORTHO05D004398 6.8e-20 100.1 67 70.1
Dinv42952 Davidia involucrata HOM05D003862 ORTHO05D004398 6.8e-20 100.1 67 70.1
Dinv43148 Davidia involucrata HOM05D003862 ORTHO05D004398 6.8e-20 100.1 67 70.1
MBI05_g22042_MAGBIO Magnolia biondii HOM05D003862 ORTHO05D004398 6.8e-20 100.1 67 70.1
Nitab4.5_0002018g0010 Nicotiana tabacum HOM05D003862 ORTHO05D004398 6.8e-20 100.1 67 71.6
Nitab4.5_0006455g0030 Nicotiana tabacum HOM05D003862 ORTHO05D004398 6.8e-20 100.1 67 71.6
MD04G1129100 Malus domestica HOM05D003862 ORTHO05D004398 8.8e-20 99.8 67 73.1
Lalb_Chr03g0026631 Lupinus albus HOM05D003862 ORTHO05D004398 1.2e-19 99.4 67 70.1
MD11G1108200 Malus domestica HOM05D003862 ORTHO05D004398 1.2e-19 99.4 67 71.6
RcHm_v2.0_Chr5g0064531 Rosa chinensis HOM05D003862 ORTHO05D004398 1.2e-19 99.4 67 71.6
Sed0022625 Sechium edule HOM05D003862 ORTHO05D004398 1.2e-19 99.4 67 71.6
MD12G1141800 Malus domestica HOM05D003862 ORTHO05D004398 1.5e-19 99.0 67 74.6
Phvul.011G064100 Phaseolus vulgaris HOM05D003862 ORTHO05D004398 1.5e-19 99.0 67 70.1
Cfa011504 Carpinus fangiana HOM05D003862 ORTHO05D004398 2.0e-19 98.6 67 70.1
CiPaw.09G192600 Carya illinoinensis HOM05D003862 ORTHO05D004398 2.0e-19 98.6 67 70.1
FvH4_3g36110 Fragaria vesca HOM05D003862 ORTHO05D004398 2.0e-19 98.6 67 70.1
FAN11G3597 Fragaria x ananassa HOM05D003862 ORTHO05D004398 2.0e-19 98.6 67 70.1
FAN16G1598 Fragaria x ananassa HOM05D003862 ORTHO05D004398 2.0e-19 98.6 67 70.1
FAN21G0907 Fragaria x ananassa HOM05D003862 ORTHO05D004398 2.0e-19 98.6 67 70.1
FAN25G1864 Fragaria x ananassa HOM05D003862 ORTHO05D004398 2.0e-19 98.6 67 70.1
Glyma.11G139400 Glycine max HOM05D003862 ORTHO05D004398 2.6e-19 98.2 67 70.1
Medtr4g063925 Medicago truncatula HOM05D003862 ORTHO05D004398 2.6e-19 98.2 67 71.6
Glyma.12G063000 Glycine max HOM05D003862 ORTHO05D004398 3.4e-19 97.8 67 70.1
PGR102G0842 Punica granatum HOM05D003862 ORTHO05D004398 3.4e-19 97.8 67 70.1
PGR119G1270 Punica granatum HOM05D003862 ORTHO05D004398 3.4e-19 97.8 67 70.1
TPR.G17728 Trifolium pratense HOM05D003862 ORTHO05D004398 3.4e-19 97.8 67 71.6
CiPaw.14G068400 Carya illinoinensis HOM05D003862 ORTHO05D004398 5.7e-19 97.1 67 68.7
Manes.02G133100 Manihot esculenta HOM05D003862 ORTHO05D004398 5.7e-19 97.1 67 71.6
Ca_19161_v3 Cicer arietinum L. HOM05D003862 ORTHO05D004398 7.5e-19 96.7 67 68.7
Duzib150G0578 Durio zibethinus HOM05D003862 ORTHO05D004398 7.5e-19 96.7 67 71.6
TPR.G14480 Trifolium pratense HOM05D003862 ORTHO05D004398 7.5e-19 96.7 67 70.1
AT3G46560 Arabidopsis thaliana HOM05D003862 ORTHO05D004398 9.7e-19 96.3 67 70.1
Carub.0005s1283 Capsella rubella HOM05D003862 ORTHO05D004398 9.7e-19 96.3 67 70.1
Mapoly0020s0168 Marchantia polymorpha HOM05D003862 ORTHO05D004398 9.7e-19 96.3 67 67.2
Cpa.g.sc81.150 Carica papaya HOM05D003862 ORTHO05D004398 1.3e-18 95.9 67 70.1
COL.COLO4_18508 Corchorus olitorius HOM05D003862 ORTHO05D004398 1.7e-18 95.5 67 70.1
Thhalv10023780m.g Eutrema salsugineum HOM05D003862 ORTHO05D004398 1.7e-18 95.5 67 70.1
Gohir.A13G227500 Gossypium hirsutum HOM05D003862 ORTHO05D004398 1.7e-18 95.5 67 70.1
Gohir.D13G233100 Gossypium hirsutum HOM05D003862 ORTHO05D004398 1.7e-18 95.5 67 70.1
Gorai.013G263900 Gossypium raimondii HOM05D003862 ORTHO05D004398 1.7e-18 95.5 67 70.1
Manes.01G173900 Manihot esculenta HOM05D003862 ORTHO05D004398 1.7e-18 95.5 67 70.1
AL5G25420 Arabidopsis lyrata HOM05D003862 ORTHO05D004398 2.2e-18 95.1 67 68.7
Ciclev10029679m.g Citrus clementina HOM05D003862 ORTHO05D004398 2.2e-18 95.1 67 70.1
TWI36G0288 Tripterygium wilfordii HOM05D003862 ORTHO05D004398 2.2e-18 95.1 67 68.7
Duzib168G1372 Durio zibethinus HOM05D003862 ORTHO05D004398 2.8e-18 94.7 67 70.1
Duzib170G0179 Durio zibethinus HOM05D003862 ORTHO05D004398 2.8e-18 94.7 67 70.1
Thhalv10002743m.g Eutrema salsugineum HOM05D003862 ORTHO05D004398 2.8e-18 94.7 67 68.7
Sp2g01740 Schrenkiella parvula HOM05D003862 ORTHO05D004398 2.8e-18 94.7 67 68.7
TWI31G1113 Tripterygium wilfordii HOM05D003862 ORTHO05D004398 2.8e-18 94.7 67 68.7
TWI75G0870 Tripterygium wilfordii HOM05D003862 ORTHO05D004398 2.8e-18 94.7 67 68.7
arahy.Tifrunner.gnm1.ann1.PAA8CG Arachis hypogaea HOM05D003862 ORTHO05D004398 3.7e-18 94.4 67 64.2
arahy.Tifrunner.gnm1.ann1.Q4VW5J Arachis hypogaea HOM05D003862 ORTHO05D004398 3.7e-18 94.4 67 64.2
Pp3c24_15930 Physcomitrium patens HOM05D003862 ORTHO05D004398 3.7e-18 94.4 67 67.2
RcHm_v2.0_Chr3g0466561 Rosa chinensis HOM05D003862 ORTHO05D004398 3.7e-18 94.4 67 70.1
Actinidia05313 Actinidia chinensis HOM05D003862 ORTHO05D004398 4.8e-18 94.0 65 67.7
BcaC02g10413 Brassica carinata HOM05D003862 ORTHO05D004398 4.8e-18 94.0 67 67.2
C04p29160 Brassica napus HOM05D003862 ORTHO05D004398 4.8e-18 94.0 67 67.2
BolC4t24450H Brassica oleracea HOM05D003862 ORTHO05D004398 4.8e-18 94.0 67 67.2
Thecc.09G321500 Theobroma cacao HOM05D003862 ORTHO05D004398 4.8e-18 94.0 67 70.1
AagrBONN_evm.TU.Sc2ySwM_368.1516 Anthoceros agrestis HOM05D003862 ORTHO05D004398 6.3e-18 93.6 67 65.7
Carub.0003s2691 Capsella rubella HOM05D003862 ORTHO05D004398 6.3e-18 93.6 67 67.2
Gohir.A03G042066 Gossypium hirsutum HOM05D003862 ORTHO05D004398 6.3e-18 93.6 67 68.7
Gohir.D03G125700 Gossypium hirsutum HOM05D003862 ORTHO05D004398 6.3e-18 93.6 67 68.7
HanXRQChr01g0009491 Helianthus annuus HOM05D003862 ORTHO05D004398 6.3e-18 93.6 67 68.7
THA.LOC104810779 Tarenaya hassleriana HOM05D003862 ORTHO05D004398 6.3e-18 93.6 67 67.2
Actinidia11257 Actinidia chinensis HOM05D003862 ORTHO05D004398 8.3e-18 93.2 67 70.1
BcaC04g22454 Brassica carinata HOM05D003862 ORTHO05D004398 8.3e-18 93.2 67 68.7
A09p15900 Brassica napus HOM05D003862 ORTHO05D004398 8.3e-18 93.2 67 68.7
C09p19140 Brassica napus HOM05D003862 ORTHO05D004398 8.3e-18 93.2 67 68.7
BolC9t54821H Brassica oleracea HOM05D003862 ORTHO05D004398 8.3e-18 93.2 67 68.7
BraA09t37226Z Brassica rapa HOM05D003862 ORTHO05D004398 8.3e-18 93.2 67 68.7
THA.LOC104799442 Tarenaya hassleriana HOM05D003862 ORTHO05D004398 8.3e-18 93.2 67 67.2
Gorai.003G131900 Gossypium raimondii HOM05D003862 ORTHO05D004398 1.1e-17 92.8 67 68.7
BcaB07g31364 Brassica carinata HOM05D003862 ORTHO05D004398 1.4e-17 92.4 67 67.2
CARHR155240 Cardamine hirsuta HOM05D003862 ORTHO05D004398 2.4e-17 91.7 67 65.7
Aa31LG4G15560 Aethionema arabicum HOM05D003862 ORTHO05D004398 3.1e-17 91.3 67 65.7
A03p68180 Brassica napus HOM05D003862 ORTHO05D004398 3.1e-17 91.3 67 65.7
BraA01t02647Z Brassica rapa HOM05D003862 ORTHO05D004398 3.1e-17 91.3 67 65.7
Rhsim05G0192800 Rhododendron simsii HOM05D003862 ORTHO05D004398 4.1e-17 90.9 90 55.6
FvH4_6g13690 Fragaria vesca HOM05D003862 ORTHO05D004398 5.3e-17 90.5 67 65.7
FAN02G2377 Fragaria x ananassa HOM05D003862 ORTHO05D004398 5.3e-17 90.5 67 65.7
FAN09G4075 Fragaria x ananassa HOM05D003862 ORTHO05D004398 5.3e-17 90.5 67 65.7
Potri.012G039100 Populus trichocarpa HOM05D003862 ORTHO05D004398 7.0e-17 90.1 67 64.2
Sabra12G0027600 Salix brachista HOM05D003862 ORTHO05D004398 7.0e-17 90.1 67 64.2
Aa31sc23G440 Aethionema arabicum HOM05D003862 ORTHO05D004398 9.1e-17 89.7 67 64.2
SMO367G0781 Selaginella moellendorffii HOM05D003862 ORTHO05D004398 1.2e-16 89.4 67 64.2
Sc20g0004910 Simmondsia chinensis HOM05D003862 ORTHO05D004398 1.2e-16 89.4 55 78.2
Cfa016018 Carpinus fangiana HOM05D000273 ORTHO05D004398 1.6e-16 89.0 67 65.7
MD03G1093400 Malus domestica HOM05D003862 ORTHO05D004398 1.6e-16 89.0 62 69.4
Nn2g14532 Nelumbo nucifera HOM05D003862 ORTHO05D004398 1.6e-16 89.0 61 70.5
VMungo1127G0240 Vigna mungo HOM05D003862 ORTHO05D004398 1.6e-16 89.0 62 67.7
ATR0559G041 Amborella trichopoda HOM05D003862 ORTHO05D004398 2.0e-16 88.6 62 69.4
Pp3c20_6200 Physcomitrium patens HOM05D003862 ORTHO05D004398 4.5e-16 87.4 67 61.2
Aqoxy4G02928 Aquilegia oxysepala HOM05D003862 ORTHO05D004398 5.9e-16 87.0 67 62.7
CAN.G326.7 Capsicum annuum HOM05D003862 ORTHO05D004398 5.9e-16 87.0 55 76.4
vmacro08654 Vaccinium macrocarpon HOM05D003862 ORTHO05D004398 5.9e-16 87.0 55 74.5
Dinv37171 Davidia involucrata HOM05D003862 ORTHO05D004398 2.2e-15 85.1 54 74.1
MCO12G250 Micromonas commoda HOM05D003862 ORTHO05D004398 2.2e-15 85.1 67 58.2
QL01p031927 Quercus lobata HOM05D003862 ORTHO05D004398 2.9e-15 84.7 55 74.5
QL07p048307 Quercus lobata HOM05D003862 ORTHO05D004398 3.8e-15 84.3 54 74.1
Haze_24096 Corylus avellana HOM05D003862 ORTHO05D004398 5.0e-15 84.0 55 72.7
CBR_g46834 Chara braunii HOM05D003862 ORTHO05D004398 1.9e-14 82.0 67 56.7
Eucgr.A01265 Eucalyptus grandis HOM05D003862 ORTHO05D004398 2.1e-13 78.6 67 59.7
arahy.Tifrunner.gnm1.ann1.817FQF Arachis hypogaea HOM05D003862 ORTHO05D004398 2.7e-13 78.2 67 55.2
arahy.Tifrunner.gnm1.ann1.JG2TRE Arachis hypogaea HOM05D003862 ORTHO05D004398 2.7e-13 78.2 67 55.2
Phvul.L001624 Phaseolus vulgaris HOM05D003862 ORTHO05D004398 3.6e-13 77.8 67 55.2
unitig_6.g29269 Utricularia gibba HOM05D003862 ORTHO05D004398 6.1e-13 77.0 67 56.7
unitig_747.g21430 Utricularia gibba HOM05D003862 ORTHO05D004398 6.1e-13 77.0 67 56.7
PGR004G0102 Punica granatum HOM05D003862 ORTHO05D004398 8.0e-13 76.6 67 58.2
arahy.Tifrunner.gnm1.ann1.GD7L84 Arachis hypogaea HOM05D003862 ORTHO05D004398 1.0e-12 76.3 67 53.7
arahy.Tifrunner.gnm1.ann1.L1N949 Arachis hypogaea HOM05D003862 ORTHO05D004398 1.4e-12 75.9 67 53.7
Glyma.03G082300 Glycine max HOM05D003862 ORTHO05D004398 1.4e-12 75.9 67 52.2
Peaxi162Scf00165g00129 Petunia axillaris HOM05D003862 ORTHO05D004398 1.4e-12 75.9 49 75.5
FAN27G3302 Fragaria x ananassa HOM05D003862 ORTHO05D004398 3.0e-12 74.7 64 54.7
Lj3g0015625 Lotus japonicus HOM05D003862 ORTHO05D004398 5.2e-12 73.9 67 52.2
SalBow2G1777 Salvia bowleyana HOM05D003862 ORTHO05D004398 2.0e-11 72.0 67 53.7
PRCOL_00005138 Prasinoderma coloniale HOM05D003862 ORTHO05D004398 9.1e-09 63.2 62 46.8
Psat7g239120 Pisum sativum HOM05D003862 ORTHO05D004398 1.2e-08 62.8 66 40.9
TPR.G5603 Trifolium pratense HOM05D003862 ORTHO05D004398 1.6e-08 62.4 67 41.8
FAN14G4115 Fragaria x ananassa HOM05D003862 ORTHO05D004398 2.9e-07 58.2 67 50.7
Cre01.g033400 Chlamydomonas reinhardtii HOM05D003862 ORTHO05D004398 6.6e-07 57.0 65 41.5
MBI14_g20103_MAGBIO Magnolia biondii HOM05D003862 ORTHO05D004398 1.1e-06 56.2 67 49.3
Os05g0111100 Oryza sativa ssp. japonica HOM05D003862 ORTHO05D004398 1.5e-06 55.8 66 42.4


User provided reference genes

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