Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g045760.1 Solanum lycopersicum HOM05D004238 ORTHO05D004934 7.5e-40 166.8 87 100.0
Solyc03g119200.4 Solanum lycopersicum HOM05D004238 ORTHO05D004934 4.7e-18 94.4 67 71.6
CAN.G1129.11 Capsicum annuum HOM05D004238 ORTHO05D004934 6.2e-18 94.0 66 72.7
PGSC0003DMG400005732 Solanum tuberosum HOM05D004238 ORTHO05D004934 6.2e-18 94.0 67 71.6
Peaxi162Scf00683g00158 Petunia axillaris HOM05D004238 ORTHO05D004934 5.2e-17 90.9 66 69.7
TAR371G0763 Trochodendron aralioides HOM05D004238 ORTHO05D004934 5.2e-17 90.9 67 68.7
Nitab4.5_0001986g0030 Nicotiana tabacum HOM05D004238 ORTHO05D004934 8.9e-17 90.1 66 69.7
Nitab4.5_0004028g0040 Nicotiana tabacum HOM05D004238 ORTHO05D004934 8.9e-17 90.1 66 69.7
Nn4g23948 Nelumbo nucifera HOM05D004238 ORTHO05D004934 1.2e-16 89.7 67 65.7
CiPaw.15G135000 Carya illinoinensis HOM05D004238 ORTHO05D004934 1.5e-16 89.4 67 67.2
COL.COLO4_20838 Corchorus olitorius HOM05D004238 ORTHO05D004934 1.5e-16 89.4 66 68.2
Haze_18725 Corylus avellana HOM05D004238 ORTHO05D004934 2.0e-16 89.0 66 68.2
Rhsim08G0130500 Rhododendron simsii HOM05D004238 ORTHO05D004934 2.0e-16 89.0 66 68.2
Rhsim08G0130600 Rhododendron simsii HOM05D004238 ORTHO05D004934 2.0e-16 89.0 66 68.2
TAR426G0005 Trochodendron aralioides HOM05D004238 ORTHO05D004934 2.0e-16 89.0 67 67.2
TAR535G0010 Trochodendron aralioides HOM05D004238 ORTHO05D004934 2.0e-16 89.0 67 67.2
CiPaw.16G088800 Carya illinoinensis HOM05D004238 ORTHO05D004934 2.6e-16 88.6 67 65.7
DCAR_015154 Daucus carota HOM05D004238 ORTHO05D004934 3.4e-16 88.2 66 65.2
MBI09_g25158_MAGBIO Magnolia biondii HOM05D004238 ORTHO05D004934 3.4e-16 88.2 67 62.7
Thecc.03G040700 Theobroma cacao HOM05D004238 ORTHO05D004934 3.4e-16 88.2 67 65.7
Lj9C425T3 Lonicera japonica HOM05D004238 ORTHO05D004934 4.4e-16 87.8 66 65.2
Prupe.5G224400 Prunus persica HOM05D004238 ORTHO05D004934 4.4e-16 87.8 67 65.7
Dinv12220 Davidia involucrata HOM05D004238 ORTHO05D004934 5.8e-16 87.4 67 64.2
PSO017G2643 Papaver somniferum HOM05D004238 ORTHO05D004934 5.8e-16 87.4 67 62.7
ClCG06G014610 Citrullus lanatus HOM05D004238 ORTHO05D004934 7.6e-16 87.0 66 66.7
Dinv28139 Davidia involucrata HOM05D004238 ORTHO05D004934 7.6e-16 87.0 67 64.2
PSO478G0260 Papaver somniferum HOM05D004238 ORTHO05D004934 9.9e-16 86.7 67 61.2
DCAR_011373 Daucus carota HOM05D004238 ORTHO05D004934 1.3e-15 86.3 66 63.6
Duzib084G0471 Durio zibethinus HOM05D004238 ORTHO05D004934 1.3e-15 86.3 66 65.2
MD14G1229600 Malus domestica HOM05D004238 ORTHO05D004934 1.3e-15 86.3 66 65.2
Gohir.D07G071400 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.7e-15 85.9 66 65.2
Atru.chr9.900 Acer truncatum HOM05D004238 ORTHO05D004934 2.2e-15 85.5 66 66.7
ATR0807G117 Amborella trichopoda HOM05D004238 ORTHO05D004934 2.2e-15 85.5 66 65.2
MSTRG.11313 Avicennia marina HOM05D004238 ORTHO05D004934 2.2e-15 85.5 66 63.6
Sed0011571 Sechium edule HOM05D004238 ORTHO05D004934 2.2e-15 85.5 66 63.6
CSS0018341 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 2.9e-15 85.1 67 65.7
CSS0035838 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 2.9e-15 85.1 67 65.7
CsaV3_1G004010 Cucumis sativus L. HOM05D004238 ORTHO05D004934 2.9e-15 85.1 66 65.2
DCAR_024088 Daucus carota HOM05D004238 ORTHO05D004934 2.9e-15 85.1 67 62.7
Oeu000985.1 Olea europaea HOM05D004238 ORTHO05D004934 2.9e-15 85.1 66 63.6
Aqoxy3G00204 Aquilegia oxysepala HOM05D004238 ORTHO05D004934 3.8e-15 84.7 67 62.7
MELO3C017324.2 Cucumis melo HOM05D004238 ORTHO05D004934 3.8e-15 84.7 66 63.6
Migut.I00409 Erythranthe guttata HOM05D004238 ORTHO05D004934 3.8e-15 84.7 62 67.7
Cc04_g06880 Coffea canephora HOM05D004238 ORTHO05D004934 4.9e-15 84.3 66 63.6
TWI15G0256 Tripterygium wilfordii HOM05D004238 ORTHO05D004934 4.9e-15 84.3 67 62.7
Atru.chr1.1618 Acer truncatum HOM05D004238 ORTHO05D004934 6.4e-15 84.0 67 61.2
Cpa.g.sc3.467 Carica papaya HOM05D004238 ORTHO05D004934 6.4e-15 84.0 66 63.6
Dinv34796 Davidia involucrata HOM05D004238 ORTHO05D004934 6.4e-15 84.0 67 59.7
FvH4_5g16670 Fragaria vesca HOM05D004238 ORTHO05D004934 6.4e-15 84.0 67 61.2
FAN08G0774 Fragaria x ananassa HOM05D004238 ORTHO05D004934 6.4e-15 84.0 67 61.2
FAN18G3483 Fragaria x ananassa HOM05D004238 ORTHO05D004934 6.4e-15 84.0 67 61.2
RcHm_v2.0_Chr7g0179451 Rosa chinensis HOM05D004238 ORTHO05D004934 6.4e-15 84.0 67 61.2
FAN13G1096 Fragaria x ananassa HOM05D004238 ORTHO05D004934 8.4e-15 83.6 66 62.1
Gorai.001G075300 Gossypium raimondii HOM05D004238 ORTHO05D004934 8.4e-15 83.6 65 64.6
Manes.01G014900 Manihot esculenta HOM05D004238 ORTHO05D004934 8.4e-15 83.6 66 63.6
GSVIVG01008335001 Vitis vinifera HOM05D004238 ORTHO05D004934 8.4e-15 83.6 67 62.7
Hma1.2p1_1283F.1_g272760 Hydrangea macrophylla HOM05D004238 ORTHO05D004934 1.1e-14 83.2 67 61.2
Sabra12G0038000 Salix brachista HOM05D004238 ORTHO05D004934 1.1e-14 83.2 67 61.2
Lsat_1_v5_gn_8_143241 Lactuca sativa HOM05D004238 ORTHO05D004934 1.4e-14 82.8 66 63.6
HanXRQChr17g0559411 Helianthus annuus HOM05D004238 ORTHO05D004934 1.9e-14 82.4 66 65.2
DCAR_011371 Daucus carota HOM05D004238 ORTHO05D004934 2.4e-14 82.0 66 60.6
MD06G1220000 Malus domestica HOM05D004238 ORTHO05D004934 2.4e-14 82.0 65 63.1
DCAR_011366 Daucus carota HOM05D004238 ORTHO05D004934 3.2e-14 81.6 66 57.6
Potri.012G054200 Populus trichocarpa HOM05D004238 ORTHO05D004934 4.2e-14 81.3 67 59.7
CANSAT80G2380 Cannabis sativa HOM05D004238 ORTHO05D004934 5.4e-14 80.9 66 62.1
Eucgr.B00825 Eucalyptus grandis HOM05D004238 ORTHO05D004934 5.4e-14 80.9 83 50.6
PGR083G1292 Punica granatum HOM05D004238 ORTHO05D004934 5.4e-14 80.9 62 62.9
Potri.015G044400 Populus trichocarpa HOM05D004238 ORTHO05D004934 7.1e-14 80.5 67 59.7
Lj4g0001453 Lotus japonicus HOM05D004238 ORTHO05D004934 9.2e-14 80.1 66 60.6
Lalb_Chr13g0293671 Lupinus albus HOM05D004238 ORTHO05D004934 9.2e-14 80.1 66 62.1
Ca_11587_v3 Cicer arietinum L. HOM05D004238 ORTHO05D004934 1.2e-13 79.7 67 58.2
Hund02354 Selenicereus undatus HOM05D004238 ORTHO05D004934 1.2e-13 79.7 62 61.3
TPR.G26740 Trifolium pratense HOM05D004238 ORTHO05D004934 1.2e-13 79.7 68 54.4
Phvul.002G182700 Phaseolus vulgaris HOM05D004238 ORTHO05D004934 1.6e-13 79.3 67 59.7
Psat7g083560 Pisum sativum HOM05D004238 ORTHO05D004934 1.6e-13 79.3 67 56.7
TPR.G5108 Trifolium pratense HOM05D004238 ORTHO05D004934 1.6e-13 79.3 67 56.7
arahy.Tifrunner.gnm1.ann1.NC6GJT Arachis hypogaea HOM05D004238 ORTHO05D004934 2.1e-13 79.0 66 59.1
Glyma.05G139300 Glycine max HOM05D004238 ORTHO05D004934 2.1e-13 79.0 67 59.7
Atru.chr12.656 Acer truncatum HOM05D004238 ORTHO05D004934 2.7e-13 78.6 68 61.8
Atru.chr12.683 Acer truncatum HOM05D004238 ORTHO05D004934 2.7e-13 78.6 69 60.9
arahy.Tifrunner.gnm1.ann1.KCMD1F Arachis hypogaea HOM05D004238 ORTHO05D004934 2.7e-13 78.6 66 59.1
Glyma.08G094600 Glycine max HOM05D004238 ORTHO05D004934 2.7e-13 78.6 67 59.7
VMungo0251G1679 Vigna mungo HOM05D004238 ORTHO05D004934 3.5e-13 78.2 67 58.2
AT3G18270 Arabidopsis thaliana HOM05D004238 ORTHO05D004934 4.6e-13 77.8 66 53.0
Duzib138G0550 Durio zibethinus HOM05D004238 ORTHO05D004934 4.6e-13 77.8 67 56.7
Sc04g0003400 Simmondsia chinensis HOM05D004238 ORTHO05D004934 4.6e-13 77.8 66 57.6
BolC5t33477H Brassica oleracea HOM05D004238 ORTHO05D004934 6.0e-13 77.4 66 54.5
A05p31380 Brassica napus HOM05D004238 ORTHO05D004934 1.3e-12 76.3 66 53.0
C05p47680 Brassica napus HOM05D004238 ORTHO05D004934 1.3e-12 76.3 66 54.5
BraA05t21977Z Brassica rapa HOM05D004238 ORTHO05D004934 1.3e-12 76.3 66 53.0
HPP92_008849 Vanilla planifolia HOM05D004238 ORTHO05D004934 1.3e-12 76.3 62 59.7
HPP92_008863 Vanilla planifolia HOM05D004238 ORTHO05D004934 1.3e-12 76.3 62 59.7
AL3G31500 Arabidopsis lyrata HOM05D004238 ORTHO05D004934 1.7e-12 75.9 66 53.0
Sp3g16390 Schrenkiella parvula HOM05D004238 ORTHO05D004934 1.7e-12 75.9 65 53.8
THA.LOC104820382 Tarenaya hassleriana HOM05D004238 ORTHO05D004934 1.7e-12 75.9 72 55.6
Zm00001eb124820 Zea mays HOM05D004238 ORTHO05D004934 1.7e-12 75.9 66 59.1
Zm00001eb335570 Zea mays HOM05D004238 ORTHO05D004934 1.7e-12 75.9 66 59.1
Aa31LG8G5120 Aethionema arabicum HOM05D004238 ORTHO05D004934 2.3e-12 75.5 66 50.0
Thhalv10020846m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 3.0e-12 75.1 66 51.5
DCAR_000177 Daucus carota HOM05D004238 ORTHO05D004934 3.9e-12 74.7 66 54.5
DCAR_011370 Daucus carota HOM05D004238 ORTHO05D004934 3.9e-12 74.7 66 54.5
CARHR093620 Cardamine hirsuta HOM05D004238 ORTHO05D004934 5.1e-12 74.3 66 51.5
Thecc.04G129000 Theobroma cacao HOM05D004238 ORTHO05D004934 5.1e-12 74.3 67 52.2
Cpa.g.sc170.33 Carica papaya HOM05D004238 ORTHO05D004934 8.7e-12 73.6 66 53.0
DCAR_000092 Daucus carota HOM05D004238 ORTHO05D004934 8.7e-12 73.6 67 58.2
Thhalv10022164m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 8.7e-12 73.6 66 50.0
Manes.02G071200 Manihot esculenta HOM05D004238 ORTHO05D004934 8.7e-12 73.6 83 45.8
Os01g0138900 Oryza sativa ssp. japonica HOM05D004238 ORTHO05D004934 8.7e-12 73.6 66 56.1
CANSAT78G0772 Cannabis sativa HOM05D004238 ORTHO05D004934 4.3e-11 71.2 66 51.5
Ciclev10011789m.g Citrus clementina HOM05D004238 ORTHO05D004934 4.3e-11 71.2 66 53.0
Gohir.A11G165600 Gossypium hirsutum HOM05D004238 ORTHO05D004934 4.3e-11 71.2 67 49.3
Mapoly0058s0107 Marchantia polymorpha HOM05D004238 ORTHO05D004934 4.3e-11 71.2 65 53.8
Carub.0003s1804 Capsella rubella HOM05D004238 ORTHO05D004934 5.6e-11 70.9 66 50.0
Eucgr.B00826 Eucalyptus grandis HOM05D004238 ORTHO05D004934 5.6e-11 70.9 66 51.5
ClCG11G007750 Citrullus lanatus HOM05D004238 ORTHO05D004934 7.3e-11 70.5 66 54.5
FAN04G1535 Fragaria x ananassa HOM05D004238 ORTHO05D004934 9.6e-11 70.1 61 57.4
COL.COLO4_09370 Corchorus olitorius HOM05D004238 ORTHO05D004934 2.1e-10 68.9 67 52.2
Gohir.D11G171700 Gossypium hirsutum HOM05D004238 ORTHO05D004934 2.8e-10 68.6 66 48.5
CDE08G0051 Ceratophyllum demersum HOM05D004238 ORTHO05D004934 4.8e-10 67.8 61 55.7
SMO146G0146 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 4.8e-10 67.8 66 53.0
CsaV3_2G033830 Cucumis sativus L. HOM05D004238 ORTHO05D004934 6.2e-10 67.4 84 44.0
SMO146G0383 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 6.2e-10 67.4 66 53.0
DCAR_011367 Daucus carota HOM05D004238 ORTHO05D004934 1.1e-09 66.6 66 48.5
Pp3c2_34370 Physcomitrium patens HOM05D004238 ORTHO05D004934 3.1e-09 65.1 66 48.5
Sed0014968 Sechium edule HOM05D004238 ORTHO05D004934 6.9e-09 63.9 66 51.5
ECA233G1745 Erigeron canadensis HOM05D004238 ORTHO05D004934 1.9e-06 55.8 33 75.8
Nn4g22335 Nelumbo nucifera HOM05D004238 ORTHO05D004934 3.2e-06 55.1 43 67.4


User provided reference genes

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