Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g045620.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 8.0e-64 246.9 122 100.0
PGSC0003DMG400015060 Solanum tuberosum HOM05D000445 ORTHO05D000314 1.2e-30 136.7 88 80.7
Solyc00g500037.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.0e-30 136.0 88 80.7
Solyc00g500046.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.0e-30 136.0 88 80.7
Solyc00g500081.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.0e-30 136.0 88 80.7
Solyc00g500128.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.0e-30 136.0 88 80.7
Solyc00g500198.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.0e-30 136.0 88 80.7
Solyc00g500327.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.0e-30 136.0 88 80.7
CAN.G413.6 Capsicum annuum HOM05D000445 ORTHO05D000314 9.9e-30 133.7 88 78.4
Solyc00g500148.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.7e-29 132.9 88 79.5
Nn070s42380 Nelumbo nucifera HOM05D000445 ORTHO05D000314 4.9e-29 131.3 88 78.4
Hma1.2p1_0192F.1_g083680 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 6.4e-29 131.0 88 77.3
Hma1.2p1_0192F.1_g083690 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 6.4e-29 131.0 88 77.3
Hma1.2p1_4210F.1_g338452 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 6.4e-29 131.0 88 77.3
Solyc10g018980.3 Solanum lycopersicum HOM05D000445 ORTHO05D000314 8.4e-29 130.6 77 80.5
Potri.013G143400 Populus trichocarpa HOM05D000445 ORTHO05D000314 1.1e-28 130.2 88 77.3
TAR383G0379 Trochodendron aralioides HOM05D000445 ORTHO05D000314 1.4e-28 129.8 88 77.3
HanXRQChr00c0165g0572211 Helianthus annuus HOM05D000445 ORTHO05D000314 2.4e-28 129.0 88 77.3
HanXRQChr00c0349g0573991 Helianthus annuus HOM05D000445 ORTHO05D000314 2.4e-28 129.0 88 77.3
HanXRQChr00c0394g0574511 Helianthus annuus HOM05D000445 ORTHO05D000314 2.4e-28 129.0 88 77.3
HanXRQChr00c0434g0574681 Helianthus annuus HOM05D000445 ORTHO05D000314 2.4e-28 129.0 88 77.3
HanXRQChr00c0451g0574821 Helianthus annuus HOM05D000445 ORTHO05D000314 2.4e-28 129.0 88 77.3
HanXRQChr00c0454g0574911 Helianthus annuus HOM05D000445 ORTHO05D000314 2.4e-28 129.0 88 77.3
HanXRQChr00c0524g0575411 Helianthus annuus HOM05D000445 ORTHO05D000314 2.4e-28 129.0 88 77.3
HanXRQChr01g0020161 Helianthus annuus HOM05D000445 ORTHO05D000314 2.4e-28 129.0 88 77.3
HanXRQChr04g0127431 Helianthus annuus HOM05D000445 ORTHO05D000314 2.4e-28 129.0 88 77.3
HanXRQChr05g0152501 Helianthus annuus HOM05D000445 ORTHO05D000314 2.4e-28 129.0 88 77.3
HanXRQChr10g0284471 Helianthus annuus HOM05D000445 ORTHO05D000314 2.4e-28 129.0 88 77.3
HanXRQChr11g0321171 Helianthus annuus HOM05D000445 ORTHO05D000314 2.4e-28 129.0 88 77.3
HanXRQChr11g0327091 Helianthus annuus HOM05D000445 ORTHO05D000314 2.4e-28 129.0 88 77.3
HanXRQChr12g0369911 Helianthus annuus HOM05D000445 ORTHO05D000314 2.4e-28 129.0 88 77.3
HanXRQChr13g0416601 Helianthus annuus HOM05D000445 ORTHO05D000314 2.4e-28 129.0 88 77.3
HanXRQCPg0580251 Helianthus annuus HOM05D000445 ORTHO05D000314 2.4e-28 129.0 88 77.3
HanXRQCPg0580471 Helianthus annuus HOM05D000445 ORTHO05D000314 2.4e-28 129.0 88 77.3
Nn020s41480 Nelumbo nucifera HOM05D000445 ORTHO05D000314 2.4e-28 129.0 88 77.3
Lalb_Chr07g0191931 Lupinus albus HOM05D000445 ORTHO05D000314 3.2e-28 128.6 88 76.1
CsaV3_UNG209000 Cucumis sativus L. HOM05D000445 ORTHO05D000314 4.2e-28 128.3 88 77.3
Lalb_Chr01g0014991 Lupinus albus HOM05D000445 ORTHO05D000314 4.2e-28 128.3 70 88.6
RcHm_v2.0_CPg0501801 Rosa chinensis HOM05D000445 ORTHO05D000314 4.2e-28 128.3 88 77.3
RcHm_v2.0_CPg0502611 Rosa chinensis HOM05D000445 ORTHO05D000314 4.2e-28 128.3 88 77.3
PSO548G0004 Papaver somniferum HOM05D000445 ORTHO05D000314 5.4e-28 127.9 87 75.9
PSO548G0115 Papaver somniferum HOM05D000445 ORTHO05D000314 5.4e-28 127.9 87 75.9
DCAR_032529 Daucus carota HOM05D000445 ORTHO05D000314 7.1e-28 127.5 69 89.9
DCAR_032547 Daucus carota HOM05D000445 ORTHO05D000314 7.1e-28 127.5 69 89.9
SabraPtG0004600 Salix brachista HOM05D000445 ORTHO05D000314 7.1e-28 127.5 88 76.1
SabraPtG0006900 Salix brachista HOM05D000445 ORTHO05D000314 7.1e-28 127.5 88 76.1
HanXRQChr00c0585g0576241 Helianthus annuus HOM05D000445 ORTHO05D000314 9.3e-28 127.1 69 89.9
HanXRQChr11g0336101 Helianthus annuus HOM05D000445 ORTHO05D000314 1.2e-27 126.7 88 76.1
HanXRQChr11g0336121 Helianthus annuus HOM05D000445 ORTHO05D000314 1.2e-27 126.7 88 76.1
HanXRQChr15g0474951 Helianthus annuus HOM05D000445 ORTHO05D000314 1.2e-27 126.7 88 76.1
Lsat_1_v5_gn_0_15540 Lactuca sativa HOM05D000445 ORTHO05D000314 1.2e-27 126.7 88 76.1
Lsat_1_v5_gn_3_105620 Lactuca sativa HOM05D000445 ORTHO05D000314 1.2e-27 126.7 88 76.1
Lsat_1_v5_gn_3_13441 Lactuca sativa HOM05D000445 ORTHO05D000314 1.2e-27 126.7 88 76.1
Lsat_1_v5_gn_8_26500 Lactuca sativa HOM05D000445 ORTHO05D000314 1.2e-27 126.7 88 76.1
Lsat_1_v5_gn_9_18701 Lactuca sativa HOM05D000445 ORTHO05D000314 1.2e-27 126.7 88 76.1
Lsat_1_v5_gn_9_42020 Lactuca sativa HOM05D000445 ORTHO05D000314 1.2e-27 126.7 88 76.1
Nn2g12581 Nelumbo nucifera HOM05D000806 ORTHO05D002320 1.2e-27 126.7 88 76.1
Gohir.D01G101865 Gossypium hirsutum HOM05D000445 ORTHO05D000314 2.1e-27 125.9 88 75.0
Gohir.A04G039060 Gossypium hirsutum HOM05D000445 ORTHO05D000314 2.7e-27 125.6 88 76.1
TPR.G25940 Trifolium pratense HOM05D000445 ORTHO05D000314 2.7e-27 125.6 70 87.1
Nitab4.5_0000223g0170 Nicotiana tabacum HOM05D000445 ORTHO05D000314 3.5e-27 125.2 88 73.9
Aqoxy169s001 Aquilegia oxysepala HOM05D000445 ORTHO05D000314 4.6e-27 124.8 70 85.7
PGR111G0085 Punica granatum HOM05D000445 ORTHO05D000314 4.6e-27 124.8 88 75.0
PGR111G0100 Punica granatum HOM05D000445 ORTHO05D000314 4.6e-27 124.8 88 75.0
arahy.Tifrunner.gnm1.ann1.R6YYA0 Arachis hypogaea HOM05D000445 ORTHO05D000314 6.0e-27 124.4 88 73.9
arahy.Tifrunner.gnm1.ann1.U896IL Arachis hypogaea HOM05D000445 ORTHO05D000314 6.0e-27 124.4 88 73.9
arahy.Tifrunner.gnm1.ann1.QI67VD Arachis hypogaea HOM05D000445 ORTHO05D000314 7.8e-27 124.0 70 85.7
Lsat_1_v5_gn_7_67161 Lactuca sativa HOM05D000445 ORTHO05D000314 7.8e-27 124.0 99 66.7
arahy.Tifrunner.gnm1.ann1.Z1U5RE Arachis hypogaea HOM05D000445 ORTHO05D000314 1.3e-26 123.2 88 72.7
Nitab4.5_0003101g0130 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.7e-26 122.9 69 87.0
Lj4g0020232 Lotus japonicus HOM05D000445 ORTHO05D000314 3.9e-26 121.7 91 71.4
LjContig00318g0022366 Lotus japonicus HOM05D000445 ORTHO05D000314 3.9e-26 121.7 91 71.4
LjContig00319g0026737 Lotus japonicus HOM05D000445 ORTHO05D000314 3.9e-26 121.7 91 71.4
ATR0258G003 Amborella trichopoda HOM05D000445 ORTHO05D000314 6.6e-26 120.9 88 75.0
Oeu012817.1 Olea europaea HOM05D000445 ORTHO05D000314 8.7e-26 120.6 70 84.3
Solyc04g024540.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 8.7e-26 120.6 70 82.9
Sc05g0004090 Simmondsia chinensis HOM05D000445 ORTHO05D000314 1.5e-25 119.8 70 84.3
Sc25g0001980 Simmondsia chinensis HOM05D000445 ORTHO05D000314 1.5e-25 119.8 70 84.3
FAN08G3077 Fragaria x ananassa HOM05D000445 ORTHO05D000314 1.9e-25 119.4 82 78.0
HanXRQChr11g0326541 Helianthus annuus HOM05D000445 ORTHO05D000314 1.9e-25 119.4 69 84.1
VMungo0942G0001 Vigna mungo HOM05D000445 ORTHO05D000314 1.9e-25 119.4 70 81.4
VMungo0976G0001 Vigna mungo HOM05D000445 ORTHO05D000314 1.9e-25 119.4 70 81.4
EL10Ac1g00652 Beta vulgaris HOM05D000445 ORTHO05D000314 3.3e-25 118.6 87 71.3
Lsat_1_v5_gn_7_82600 Lactuca sativa HOM05D000445 ORTHO05D000314 4.3e-25 118.2 69 84.1
arahy.Tifrunner.gnm1.ann1.BS87Z8 Arachis hypogaea HOM05D000445 ORTHO05D000314 5.6e-25 117.9 72 80.6
EL10As18g24166 Beta vulgaris HOM05D000445 ORTHO05D000314 1.6e-24 116.3 88 70.5
ATCG00860 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 2.1e-24 115.9 85 71.8
ATCG01280 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 2.1e-24 115.9 85 71.8
CARHR282560 Cardamine hirsuta HOM05D000445 ORTHO05D000314 2.1e-24 115.9 85 71.8
unitig_91.g26530 Utricularia gibba HOM05D000445 ORTHO05D000314 2.1e-24 115.9 88 72.7
Eucgr.J02700 Eucalyptus grandis HOM05D000445 ORTHO05D000314 4.8e-24 114.8 62 88.7
HanXRQChr00c0533g0575561 Helianthus annuus HOM05D000445 ORTHO05D000314 8.1e-24 114.0 59 91.5
Peaxi162Scf00211g00218 Petunia axillaris HOM05D000445 ORTHO05D000314 1.4e-23 113.2 94 68.1
Gohir.A12G088950 Gossypium hirsutum HOM05D000445 ORTHO05D000314 2.4e-23 112.5 80 73.8
EL10Ac8g19269 Beta vulgaris HOM05D000445 ORTHO05D000314 3.1e-23 112.1 94 63.8
C06p21350 Brassica napus HOM05D000445 ORTHO05D000314 3.1e-23 112.1 85 69.4
BolSC29t60491H Brassica oleracea HOM05D000445 ORTHO05D000314 3.1e-23 112.1 85 69.4
BolSC49t61128H Brassica oleracea HOM05D000445 ORTHO05D000314 3.1e-23 112.1 85 69.4
BraSC103t45415Z Brassica rapa HOM05D000445 ORTHO05D000314 3.1e-23 112.1 85 69.4
BraSC103t45439Z Brassica rapa HOM05D000445 ORTHO05D000314 3.1e-23 112.1 85 69.4
BraSC143t45643Z Brassica rapa HOM05D000445 ORTHO05D000314 3.1e-23 112.1 85 69.4
BraSC25t45893Z Brassica rapa HOM05D000445 ORTHO05D000314 3.1e-23 112.1 85 69.4
BraSC179t45786Z Brassica rapa HOM05D000445 ORTHO05D000314 6.9e-23 110.9 85 68.2
Nn269s46007 Nelumbo nucifera HOM05D000445 ORTHO05D000314 2.0e-22 109.4 82 69.5
Hund08796 Selenicereus undatus HOM05D000445 ORTHO05D000314 2.6e-22 109.0 71 80.3
Hund10280 Selenicereus undatus HOM05D000445 ORTHO05D000314 2.6e-22 109.0 71 80.3
Hund28591 Selenicereus undatus HOM05D000445 ORTHO05D000314 2.6e-22 109.0 71 80.3
Hund28646 Selenicereus undatus HOM05D000445 ORTHO05D000314 2.6e-22 109.0 71 80.3
Hund28772 Selenicereus undatus HOM05D000445 ORTHO05D000314 2.6e-22 109.0 71 80.3
Hund29402 Selenicereus undatus HOM05D000445 ORTHO05D000314 2.6e-22 109.0 71 80.3
Hund29423 Selenicereus undatus HOM05D000445 ORTHO05D000314 2.6e-22 109.0 71 80.3
BraSC59t46524Z Brassica rapa HOM05D000445 ORTHO05D000314 7.6e-22 107.5 68 77.9
Gorai.002G166000 Gossypium raimondii HOM05D000445 ORTHO05D000314 4.9e-21 104.8 91 62.6
Lalb_Chr13g0292601 Lupinus albus HOM05D000445 ORTHO05D000314 2.1e-19 99.4 57 84.2
Lalb_Chr12g0206591 Lupinus albus HOM05D000445 ORTHO05D000314 3.5e-19 98.6 73 68.5
HanXRQChr00c0392g0574461 Helianthus annuus HOM05D000445 ORTHO05D000314 6.0e-19 97.8 81 66.7
LjContig00489g0008652 Lotus japonicus HOM05D000445 ORTHO05D000314 6.0e-19 97.8 72 66.7
Oeu022561.1 Olea europaea HOM05D000445 ORTHO05D000314 6.0e-19 97.8 103 50.5
Ah.10g027230 Amaranthus hybridus HOM05D000445 ORTHO05D000314 3.9e-18 95.1 71 76.1
Ah.10g027290 Amaranthus hybridus HOM05D000445 ORTHO05D000314 3.9e-18 95.1 71 76.1
Ah.10g027420 Amaranthus hybridus HOM05D000445 ORTHO05D000314 3.9e-18 95.1 71 76.1
Ah.10g027670 Amaranthus hybridus HOM05D000445 ORTHO05D000314 3.9e-18 95.1 71 76.1
Ah.10g027730 Amaranthus hybridus HOM05D000445 ORTHO05D000314 3.9e-18 95.1 71 76.1
Peaxi162Scf00005g04915 Petunia axillaris HOM05D000729 ORTHO05D001063 5.1e-18 94.7 51 90.2
Solyc01g017110.2 Solanum lycopersicum HOM05D000445 ORTHO05D000314 6.6e-18 94.4 56 80.4
Oeu058356.1 Olea europaea HOM05D000445 ORTHO05D000314 8.7e-18 94.0 55 81.8
Nitab4.5_0002093g0210 Nicotiana tabacum HOM05D000445 ORTHO05D000314 4.5e-14 81.6 40 95.0
Ah.10g029020 Amaranthus hybridus HOM05D000445 ORTHO05D000314 5.8e-14 81.3 65 72.3
Solyc09g031840.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.3e-13 80.1 58 74.1
Solyc05g047670.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 8.4e-13 77.4 37 94.6
HanXRQChr13g0418951 Helianthus annuus HOM05D000445 ORTHO05D000314 1.1e-12 77.0 58 70.7
Solyc04g050840.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.4e-12 75.9 58 70.7
Gohir.D10G110850 Gossypium hirsutum HOM05D000445 ORTHO05D000314 4.2e-12 75.1 68 58.8
FAN18G1965 Fragaria x ananassa HOM05D000445 ORTHO05D000314 5.4e-12 74.7 58 69.0
arahy.Tifrunner.gnm1.ann1.9A3TMW Arachis hypogaea HOM05D000445 ORTHO05D000314 9.3e-12 73.9 58 67.2
Eucgr.G01321 Eucalyptus grandis HOM05D000445 ORTHO05D000314 1.2e-11 73.6 42 83.3
Peaxi162Scf00134g01413 Petunia axillaris HOM05D011550 ORTHO05D015717 1.2e-11 73.6 37 91.9
Thhalv10001808m.g Eutrema salsugineum HOM05D000445 ORTHO05D000314 6.0e-11 71.2 57 64.9
BraSC138t45546Z Brassica rapa HOM05D000445 ORTHO05D000314 1.0e-10 70.5 55 65.5
Migut.D01405 Erythranthe guttata HOM05D000445 ORTHO05D000314 1.3e-10 70.1 67 56.7
Migut.M00451 Erythranthe guttata HOM05D000445 ORTHO05D000314 1.8e-10 69.7 57 68.4
Gorai.011G122200 Gossypium raimondii HOM05D000445 ORTHO05D000314 5.1e-10 68.2 51 66.7
HanXRQChr00c0448g0574801 Helianthus annuus HOM05D000445 ORTHO05D000314 5.1e-10 68.2 57 66.7
Gohir.D02G149651 Gossypium hirsutum HOM05D000445 ORTHO05D000314 1.1e-09 67.0 53 67.9
Hund11510 Selenicereus undatus HOM05D000445 ORTHO05D000314 5.6e-09 64.7 42 78.6
Hund19326 Selenicereus undatus HOM05D000445 ORTHO05D000314 5.6e-09 64.7 41 80.5
Hund26852 Selenicereus undatus HOM05D000445 ORTHO05D000314 5.6e-09 64.7 41 80.5
CiPaw.03G000800 Carya illinoinensis HOM05D000445 ORTHO05D000314 7.4e-09 64.3 66 53.0
Gorai.005G167600 Gossypium raimondii HOM05D000445 ORTHO05D000314 1.6e-08 63.2 62 58.1
Nitab4.5_0004573g0040 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.6e-08 63.2 42 76.2
Gorai.007G214200 Gossypium raimondii HOM05D000445 ORTHO05D000314 1.4e-07 60.1 36 80.6
C08p15300 Brassica napus HOM05D000216 ORTHO05D000314 2.6e-06 55.8 40 72.5
BolC8t49159H Brassica oleracea HOM05D000216 ORTHO05D000314 2.6e-06 55.8 40 72.5
Migut.D01372 Erythranthe guttata HOM05D000445 ORTHO05D000314 7.6e-06 54.3 27 88.9
HanXRQChr00c0925g0577921 Helianthus annuus HOM05D000445 ORTHO05D000314 1.0e-05 53.9 26 92.3


User provided reference genes

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