Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g044305.1 Solanum lycopersicum HOM05D016353 ORTHO05D017748 1.4e-87 326.6 215 100.0
CAN.G538.6 Capsicum annuum HOM05D016353 ORTHO05D017748 1.9e-28 130.2 177 61.0
Solyc01g014725.2 Solanum lycopersicum HOM05D016353 ORTHO05D017748 3.6e-27 125.9 120 93.3
Solyc09g055425.2 Solanum lycopersicum HOM05D016353 ORTHO05D017748 5.8e-25 118.6 119 91.6
CAN.G1267.1 Capsicum annuum HOM05D016353 ORTHO05D017748 1.0e-13 81.3 166 36.1
Solyc06g006010.3 Solanum lycopersicum HOM05D000021 ORTHO05D000010 5.6e-12 75.5 165 37.6
Solyc06g006028.1 Solanum lycopersicum HOM05D000021 ORTHO05D000010 5.6e-12 75.5 66 77.3
PGSC0003DMG400020832 Solanum tuberosum HOM05D000021 ORTHO05D000010 1.3e-11 74.3 65 80.0
Sopen06g002000 Solanum pennellii HOM05D000021 ORTHO05D000010 1.4e-10 70.9 140 43.6
Sopen02g017970 Solanum pennellii HOM05D000021 ORTHO05D000010 1.2e-09 67.8 62 51.6
Solyc02g150128.1 Solanum lycopersicum HOM05D000021 ORTHO05D000010 4.5e-09 65.9 62 50.0
Solyc06g006024.1 Solanum lycopersicum HOM05D000021 ORTHO05D000010 4.5e-09 65.9 34 85.3
Cc10_g10450 Coffea canephora HOM05D000021 ORTHO05D000010 9.9e-09 64.7 99 38.4
FAN25G0019 Fragaria x ananassa HOM05D000021 ORTHO05D000010 4.9e-08 62.4 87 36.8
Solyc06g006020.3 Solanum lycopersicum HOM05D000021 ORTHO05D000010 4.9e-08 62.4 30 90.0
Nitab4.5_0000818g0080 Nicotiana tabacum HOM05D000021 ORTHO05D000010 1.1e-07 61.2 48 64.6
Nitab4.5_0001288g0090 Nicotiana tabacum HOM05D000021 ORTHO05D000010 1.1e-07 61.2 34 76.5
Cc11_g02200 Coffea canephora HOM05D000021 ORTHO05D000010 1.4e-07 60.8 100 33.0
Nitab4.5_0004246g0070 Nicotiana tabacum HOM05D000021 ORTHO05D000010 1.4e-07 60.8 49 63.3
Thecc.07G122800 Theobroma cacao HOM05D000021 ORTHO05D000010 1.4e-07 60.8 116 37.1
CAN.G1321.3 Capsicum annuum HOM05D000021 ORTHO05D000010 1.9e-07 60.5 34 79.4
Nitab4.5_0003926g0030 Nicotiana tabacum HOM05D000021 ORTHO05D000010 3.2e-07 59.7 60 70.0
Sopen06g002020 Solanum pennellii HOM05D000021 ORTHO05D000010 4.2e-07 59.3 34 76.5
Solyc06g006022.1 Solanum lycopersicum HOM05D000021 ORTHO05D000010 5.5e-07 58.9 31 83.9
Gorai.002G049400 Gossypium raimondii HOM05D000021 ORTHO05D000010 7.1e-07 58.5 52 57.7
FAN21G1852 Fragaria x ananassa HOM05D000021 ORTHO05D000010 1.2e-06 57.8 52 46.2
MD07G1035000 Malus domestica HOM05D000021 ORTHO05D000010 2.1e-06 57.0 61 45.9
RcHm_v2.0_Chr2g0114221 Rosa chinensis HOM05D000021 ORTHO05D000010 2.1e-06 57.0 55 49.1
Ciclev10003553m.g Citrus clementina HOM05D000021 ORTHO05D000010 3.5e-06 56.2 62 40.3
Gohir.D01G039832 Gossypium hirsutum HOM05D000021 ORTHO05D000010 3.5e-06 56.2 52 55.8
Nitab4.5_0001288g0100 Nicotiana tabacum HOM05D000021 ORTHO05D000010 4.6e-06 55.8 60 70.0
Nitab4.5_0001288g0110 Nicotiana tabacum HOM05D000021 ORTHO05D000010 4.6e-06 55.8 58 53.4
Nitab4.5_0001288g0190 Nicotiana tabacum HOM05D000021 ORTHO05D000010 4.6e-06 55.8 131 63.4
Cc11_g07850 Coffea canephora HOM05D000021 ORTHO05D000010 6.0e-06 55.5 68 41.2
Sopen06g014970 Solanum pennellii HOM05D000002 ORTHO05D000001 6.0e-06 55.5 33 75.8
Thecc.05G018800 Theobroma cacao HOM05D000021 ORTHO05D000010 6.0e-06 55.5 101 31.7
CSS0038316 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 7.9e-06 55.1 53 49.1
CAN.G200.5 Capsicum annuum HOM05D016353 ORTHO05D017748 7.9e-06 55.1 35 74.3
MD07G1308700 Malus domestica HOM05D000021 ORTHO05D000010 7.9e-06 55.1 56 42.9


User provided reference genes

Program Settings