Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g043180.3 Solanum lycopersicum HOM05D006710 ORTHO05D008353 1.7e-114 416.0 212 100.0
Sopen08g012960 Solanum pennellii HOM05D006710 ORTHO05D008353 2.8e-112 408.7 212 98.1
PGSC0003DMG400026653 Solanum tuberosum HOM05D006710 ORTHO05D008353 6.4e-109 397.5 212 94.8
CAN.G809.16 Capsicum annuum HOM05D006710 ORTHO05D008353 2.2e-93 345.9 215 84.7
Nitab4.5_0010747g0020 Nicotiana tabacum HOM05D006710 ORTHO05D008353 3.3e-89 332.0 213 82.2
Peaxi162Scf00071g00728 Petunia axillaris HOM05D006710 ORTHO05D008353 9.6e-89 330.5 208 79.3
Nitab4.5_0000424g0030 Nicotiana tabacum HOM05D006710 ORTHO05D008353 1.1e-87 327.0 205 82.9
Actinidia05724 Actinidia chinensis HOM05D006710 ORTHO05D008353 5.8e-86 321.2 210 78.6
Actinidia23607 Actinidia chinensis HOM05D006710 ORTHO05D008353 1.3e-85 320.1 212 78.3
Manes.09G163400 Manihot esculenta HOM05D006710 ORTHO05D008353 7.9e-83 310.8 214 74.3
CSS0006596 Camellia sinensis var. sinensis HOM05D006710 ORTHO05D008353 1.0e-82 310.5 212 76.4
CSS0018519 Camellia sinensis var. sinensis HOM05D006710 ORTHO05D008353 1.3e-82 310.1 212 76.4
Sabra13G0027300 Salix brachista HOM05D006710 ORTHO05D008353 1.7e-82 309.7 215 72.1
PGR031G3544 Punica granatum HOM05D006710 ORTHO05D008353 5.1e-82 308.1 176 85.8
FAN05G4089 Fragaria x ananassa HOM05D006710 ORTHO05D008353 1.5e-81 306.6 218 72.0
Rhsim07G0179500 Rhododendron simsii HOM05D006710 ORTHO05D008353 1.9e-81 306.2 189 79.9
QL03p004347 Quercus lobata HOM05D006710 ORTHO05D008353 2.5e-81 305.8 173 85.0
MSTRG.20477 Avicennia marina HOM05D006710 ORTHO05D008353 5.6e-81 304.7 192 78.1
RcHm_v2.0_Chr3g0454051 Rosa chinensis HOM05D006710 ORTHO05D008353 5.6e-81 304.7 219 70.3
Potri.013G026500 Populus trichocarpa HOM05D006710 ORTHO05D008353 7.3e-81 304.3 215 70.2
TWI56G0551 Tripterygium wilfordii HOM05D006710 ORTHO05D008353 9.6e-81 303.9 174 84.5
CsaV3_2G004900 Cucumis sativus L. HOM05D006710 ORTHO05D008353 2.8e-80 302.4 216 71.8
vmacro05032 Vaccinium macrocarpon HOM05D006710 ORTHO05D008353 3.6e-80 302.0 195 77.4
Cfa006542 Carpinus fangiana HOM05D006710 ORTHO05D008353 8.1e-80 300.8 174 82.8
SalBow8G3090 Salvia bowleyana HOM05D006710 ORTHO05D008353 8.1e-80 300.8 182 81.3
TWI12G0766 Tripterygium wilfordii HOM05D006710 ORTHO05D008353 1.1e-79 300.4 174 82.8
Lalb_Chr15g0077091 Lupinus albus HOM05D006710 ORTHO05D008353 2.4e-79 299.3 211 72.5
AUR62005111 Chenopodium quinoa HOM05D006710 ORTHO05D008353 3.1e-79 298.9 210 71.4
Haze_04239 Corylus avellana HOM05D006710 ORTHO05D008353 4.0e-79 298.5 174 82.2
Ciclev10002268m.g Citrus clementina HOM05D006710 ORTHO05D008353 5.3e-79 298.1 174 81.6
FAN14G5365 Fragaria x ananassa HOM05D006710 ORTHO05D008353 6.9e-79 297.7 234 68.4
Nn4g26145 Nelumbo nucifera HOM05D006710 ORTHO05D008353 6.9e-79 297.7 187 78.6
Prupe.6G330500 Prunus persica HOM05D006710 ORTHO05D008353 6.9e-79 297.7 215 69.3
EL10Ac4g09302 Beta vulgaris HOM05D006710 ORTHO05D008353 9.0e-79 297.4 211 71.1
Dinv40255 Davidia involucrata HOM05D006710 ORTHO05D008353 9.0e-79 297.4 212 72.6
unitig_0.g2209 Utricularia gibba HOM05D006710 ORTHO05D008353 9.0e-79 297.4 213 69.0
Cpa.g.sc48.8 Carica papaya HOM05D006710 ORTHO05D008353 1.5e-78 296.6 174 81.6
CiPaw.08G166900 Carya illinoinensis HOM05D006710 ORTHO05D008353 3.4e-78 295.4 213 69.0
Duzib177G0772 Durio zibethinus HOM05D006710 ORTHO05D008353 3.4e-78 295.4 188 76.1
CANSAT54G0344 Cannabis sativa HOM05D006710 ORTHO05D008353 5.8e-78 294.7 186 77.4
Thecc.05G308800 Theobroma cacao HOM05D006710 ORTHO05D008353 7.6e-78 294.3 209 70.8
AUR62000864 Chenopodium quinoa HOM05D006710 ORTHO05D008353 9.9e-78 293.9 210 71.4
arahy.Tifrunner.gnm1.ann1.ACRB0G Arachis hypogaea HOM05D006710 ORTHO05D008353 1.7e-77 293.1 211 72.0
arahy.Tifrunner.gnm1.ann1.KZLY5F Arachis hypogaea HOM05D006710 ORTHO05D008353 3.8e-77 292.0 211 71.6
Lj9A681T40 Lonicera japonica HOM05D006710 ORTHO05D008353 3.8e-77 292.0 241 65.6
Gorai.013G204100 Gossypium raimondii HOM05D006710 ORTHO05D008353 6.4e-77 291.2 189 74.1
Eucgr.H04455 Eucalyptus grandis HOM05D006710 ORTHO05D008353 1.4e-76 290.0 172 79.7
HanXRQChr09g0258761 Helianthus annuus HOM05D006710 ORTHO05D008353 1.4e-76 290.0 218 69.7
MD04G1209500 Malus domestica HOM05D006710 ORTHO05D008353 1.4e-76 290.0 219 66.7
Gohir.D13G178900 Gossypium hirsutum HOM05D006710 ORTHO05D008353 2.4e-76 289.3 189 73.5
MD12G1224100 Malus domestica HOM05D006710 ORTHO05D008353 2.4e-76 289.3 213 69.0
Gohir.A13G173100 Gossypium hirsutum HOM05D006710 ORTHO05D008353 3.2e-76 288.9 189 73.5
Gohir.D11G272800 Gossypium hirsutum HOM05D006710 ORTHO05D008353 4.2e-76 288.5 196 73.0
Gorai.007G294100 Gossypium raimondii HOM05D006710 ORTHO05D008353 4.2e-76 288.5 196 73.0
Atru.chr2.492 Acer truncatum HOM05D006710 ORTHO05D008353 9.3e-76 287.3 187 74.9
FAN09G4503 Fragaria x ananassa HOM05D006710 ORTHO05D008353 1.0e-74 283.9 259 60.6
ClCG02G016080 Citrullus lanatus HOM05D006710 ORTHO05D008353 2.3e-74 282.7 216 69.0
Lalb_Chr02g0148381 Lupinus albus HOM05D006710 ORTHO05D008353 2.3e-74 282.7 213 70.0
THA.LOC104802809 Tarenaya hassleriana HOM05D006710 ORTHO05D008353 3.0e-74 282.3 172 80.8
ECA232G0378 Erigeron canadensis HOM05D006710 ORTHO05D008353 3.9e-74 282.0 180 73.9
Sed0009429 Sechium edule HOM05D006710 ORTHO05D008353 6.7e-74 281.2 223 65.5
Migut.B01148 Erythranthe guttata HOM05D006710 ORTHO05D008353 8.7e-74 280.8 178 75.8
MBI19_g27535_MAGBIO Magnolia biondii HOM05D006710 ORTHO05D008353 8.7e-74 280.8 185 75.1
CDE08G1170 Ceratophyllum demersum HOM05D006710 ORTHO05D008353 1.5e-73 280.0 182 75.3
Glyma.10G157000 Glycine max HOM05D006710 ORTHO05D008353 1.5e-73 280.0 181 75.7
VMungo0720G2835 Vigna mungo HOM05D006710 ORTHO05D008353 1.9e-73 279.6 219 66.2
Aqoxy2G03215 Aquilegia oxysepala HOM05D006710 ORTHO05D008353 4.3e-73 278.5 211 68.7
COL.COLO4_13519 Corchorus olitorius HOM05D000735 ORTHO05D000838 4.3e-73 278.5 196 70.4
CARHR185990 Cardamine hirsuta HOM05D006710 ORTHO05D008353 2.1e-72 276.2 215 65.6
Thhalv10004765m.g Eutrema salsugineum HOM05D006710 ORTHO05D008353 2.1e-72 276.2 170 77.6
AL6G39620 Arabidopsis lyrata HOM05D006710 ORTHO05D008353 8.1e-72 274.2 184 72.3
Ca_10089_v3 Cicer arietinum L. HOM05D006710 ORTHO05D008353 8.1e-72 274.2 188 70.7
Phvul.007G182300 Phaseolus vulgaris HOM05D006710 ORTHO05D008353 8.1e-72 274.2 219 63.5
Sc09g0003360 Simmondsia chinensis HOM05D006710 ORTHO05D006029 1.4e-71 273.5 162 79.0
Carub.0006s2515 Capsella rubella HOM05D006710 ORTHO05D008353 1.8e-71 273.1 215 64.2
BcaNung04366 Brassica carinata HOM05D006710 ORTHO05D008353 4.0e-71 271.9 200 68.5
BcaNung02465 Brassica carinata HOM05D006710 ORTHO05D008353 5.3e-71 271.6 198 68.7
AT5G27390 Arabidopsis thaliana HOM05D006710 ORTHO05D008353 9.0e-71 270.8 196 67.9
Sp2g20620 Schrenkiella parvula HOM05D006710 ORTHO05D008353 1.5e-70 270.0 172 75.6
FAN14G4294 Fragaria x ananassa HOM05D006710 ORTHO05D008353 3.4e-70 268.9 221 65.6
ATR0626G338 Amborella trichopoda HOM05D006710 ORTHO05D008353 2.9e-69 265.8 169 75.1
Hund07043 Selenicereus undatus HOM05D006710 ORTHO05D008353 2.9e-69 265.8 216 63.9
Zm00001eb346790 Zea mays HOM05D006710 ORTHO05D008353 1.9e-68 263.1 172 71.5
C07p40720 Brassica napus HOM05D006710 ORTHO05D008353 5.5e-68 261.5 210 65.7
BolC7t44600H Brassica oleracea HOM05D006710 ORTHO05D008353 5.5e-68 261.5 210 65.7
Ah.06g190140 Amaranthus hybridus HOM05D006710 ORTHO05D008353 7.1e-68 261.2 195 67.7
Lj5g0024082 Lotus japonicus HOM05D006710 ORTHO05D008353 2.1e-67 259.6 178 71.3
Os05g0401300 Oryza sativa ssp. japonica HOM05D006710 ORTHO05D008353 2.1e-67 259.6 187 66.8
A06p37590 Brassica napus HOM05D006710 ORTHO05D008353 2.7e-67 259.2 210 66.2
HPP92_013667 Vanilla planifolia HOM05D006710 ORTHO05D008353 3.5e-67 258.8 203 64.0
SGA_v2.0_scaffold244G44356 Striga asiatica HOM05D006710 ORTHO05D008353 7.9e-67 257.7 204 64.2
Medtr1g082430 Medicago truncatula HOM05D006710 ORTHO05D008353 1.3e-64 250.4 215 58.6
PSO407G0185 Papaver somniferum HOM05D006710 ORTHO05D008353 8.2e-64 247.7 174 69.0
PSO170G1405 Papaver somniferum HOM05D006710 ORTHO05D008353 1.1e-63 247.3 174 69.0
Psat6g148920 Pisum sativum HOM05D006710 ORTHO05D008353 2.4e-63 246.1 219 57.5
Gohir.A11G262800 Gossypium hirsutum HOM05D006710 ORTHO05D008353 9.0e-63 244.2 167 72.5
GSVIVG01000003001 Vitis vinifera HOM05D006710 ORTHO05D008353 5.8e-62 241.5 144 82.6
Lsat_1_v5_gn_8_116001 Lactuca sativa HOM05D006710 ORTHO05D008353 1.7e-61 240.0 157 70.7
SEGI_09082 Sequoiadendron giganteum HOM05D006710 ORTHO05D008353 9.3e-60 234.2 202 57.9
TAR362G0522 Trochodendron aralioides HOM05D006710 ORTHO05D008353 9.3e-60 234.2 144 81.9
Aa31LG11G9170 Aethionema arabicum HOM05D006710 ORTHO05D008353 5.7e-57 224.9 225 55.6
CDE02G4396 Ceratophyllum demersum HOM05D000137 ORTHO05D000503 8.2e-56 221.1 136 77.9
BraA06t26678Z Brassica rapa HOM05D006710 ORTHO05D008353 1.4e-55 220.3 189 63.5
Glyma.20G231700 Glycine max HOM05D006710 ORTHO05D008353 8.2e-48 194.5 134 70.9
AagrBONN_evm.TU.Sc2ySwM_368.548 Anthoceros agrestis HOM05D006710 ORTHO05D008353 6.9e-47 191.4 168 53.6
MELO3C004308.2 Cucumis melo HOM05D006710 ORTHO05D008353 1.1e-44 184.1 138 68.8
FAN05G4701 Fragaria x ananassa HOM05D006710 ORTHO05D008353 5.5e-44 181.8 206 51.5
TPR.G327 Trifolium pratense HOM05D006710 ORTHO05D008353 1.6e-43 180.3 125 68.0
Mapoly0057s0090 Marchantia polymorpha HOM05D006710 ORTHO05D008353 5.1e-42 175.3 166 50.6
Pp3c11_21800 Physcomitrium patens HOM05D006710 ORTHO05D008353 1.8e-39 166.8 181 44.8
Cc02_g32660 Coffea canephora HOM05D006710 ORTHO05D008353 5.3e-39 165.2 120 72.5
SMO356G0400 Selaginella moellendorffii HOM05D006710 ORTHO05D008353 9.1e-39 164.5 167 47.9
Cc02_g32640 Coffea canephora HOM05D006710 ORTHO05D008353 7.7e-38 161.4 95 82.1
FvH4_6g05310 Fragaria vesca HOM05D006710 ORTHO05D008353 2.2e-37 159.8 131 61.8
DCAR_022246 Daucus carota HOM05D006710 ORTHO05D008353 3.6e-35 152.5 112 69.6
FAN02G1407 Fragaria x ananassa HOM05D006710 ORTHO05D008353 4.7e-27 125.6 107 60.7
EL10Ac7g17500 Beta vulgaris HOM05D006710 ORTHO05D008353 6.8e-26 121.7 96 64.6
Thecc.05G311300 Theobroma cacao HOM05D000126 ORTHO05D008353 1.8e-23 113.6 68 76.5
CBR_g32459 Chara braunii HOM05D000019 ORTHO05D000353 4.5e-14 82.4 183 28.4
MCO13G061 Micromonas commoda HOM05D006710 ORTHO05D008353 1.3e-13 80.9 132 32.6
Cre13.g564050 Chlamydomonas reinhardtii HOM05D006710 ORTHO05D008353 2.0e-09 67.0 142 30.3
PRCOL_00002748 Prasinoderma coloniale HOM05D006710 ORTHO05D008353 6.4e-08 62.0 128 31.2


User provided reference genes

Program Settings