Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 3.2e-105 385.2 204 100.0
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 1.9e-102 375.9 206 99.0
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 7.0e-97 357.5 209 91.4
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 4.4e-91 338.2 224 84.4
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 7.6e-83 310.8 201 79.6
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 4.9e-82 308.1 210 78.6
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 4.9e-82 308.1 203 78.8
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 3.2e-81 305.4 200 80.0
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 7.1e-81 304.3 198 80.8
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 7.1e-81 304.3 200 77.5
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.7e-80 302.4 196 78.1
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 2.7e-80 302.4 207 76.8
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 3.5e-80 302.0 186 82.3
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 6.0e-80 301.2 198 77.8
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 6.0e-80 301.2 200 79.5
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 7.8e-80 300.8 207 76.3
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 1.0e-79 300.4 192 80.2
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 1.3e-79 300.1 200 79.0
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 2.3e-79 299.3 180 81.1
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 3.0e-79 298.9 207 77.3
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 3.0e-79 298.9 200 79.0
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 3.9e-79 298.5 201 79.1
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 3.9e-79 298.5 207 75.4
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 5.1e-79 298.1 200 78.0
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 6.6e-79 297.7 200 77.0
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 6.6e-79 297.7 203 78.3
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 6.6e-79 297.7 202 78.2
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 6.6e-79 297.7 197 78.7
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 1.1e-78 297.0 200 75.5
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 1.5e-78 296.6 200 77.0
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 1.5e-78 296.6 182 81.3
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 1.5e-78 296.6 200 77.5
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 1.5e-78 296.6 207 71.5
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 1.9e-78 296.2 203 76.4
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 1.9e-78 296.2 180 81.1
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 1.9e-78 296.2 191 79.1
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 2.5e-78 295.8 198 78.3
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 2.5e-78 295.8 198 76.8
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 5.6e-78 294.7 208 76.0
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 5.6e-78 294.7 177 81.9
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 9.6e-78 293.9 178 80.3
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 1.2e-77 293.5 208 74.0
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 1.6e-77 293.1 195 74.9
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 1.6e-77 293.1 180 80.0
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 2.8e-77 292.4 203 76.8
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 4.7e-77 291.6 203 76.4
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 4.7e-77 291.6 199 75.9
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 4.7e-77 291.6 210 73.3
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 8.1e-77 290.8 206 74.3
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 1.1e-76 290.4 204 75.0
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 1.4e-76 290.0 208 72.6
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 1.8e-76 289.7 182 80.2
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 4.0e-76 288.5 206 73.3
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 8.9e-76 287.3 198 72.7
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 1.2e-75 287.0 201 74.6
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 7.6e-75 284.3 188 79.3
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 7.6e-75 284.3 188 79.3
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 7.6e-75 284.3 203 72.9
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 1.3e-74 283.5 198 74.2
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 1.3e-74 283.5 195 77.4
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 1.7e-74 283.1 200 73.5
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 2.2e-74 282.7 209 69.4
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 3.8e-74 282.0 202 73.8
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 8.4e-74 280.8 195 76.4
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.1e-73 280.4 199 73.4
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.1e-73 280.4 199 73.4
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 1.4e-73 280.0 205 74.1
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 1.9e-73 279.6 182 81.3
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 3.2e-73 278.9 200 74.5
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 5.4e-73 278.1 195 75.4
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 5.4e-73 278.1 195 75.9
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 7.1e-73 277.7 200 72.5
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 7.1e-73 277.7 198 71.2
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 9.3e-73 277.3 204 72.5
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 1.2e-72 276.9 198 73.2
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 1.6e-72 276.6 186 74.7
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 1.6e-72 276.6 221 71.0
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 2.1e-72 276.2 204 72.1
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 3.5e-72 275.4 198 73.2
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 7.8e-72 274.2 199 69.8
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 1.0e-71 273.9 198 72.2
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 1.0e-71 273.9 162 82.7
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 1.3e-71 273.5 206 68.9
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 1.3e-71 273.5 204 71.6
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 1.7e-71 273.1 198 72.2
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 2.3e-71 272.7 194 73.2
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 2.3e-71 272.7 204 72.1
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 3.0e-71 272.3 173 78.0
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 3.9e-71 271.9 198 71.7
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 6.6e-71 271.2 202 68.3
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 8.7e-71 270.8 208 69.7
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 1.5e-70 270.0 199 69.3
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 1.9e-70 269.6 202 70.8
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 2.5e-70 269.2 198 71.2
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 3.3e-70 268.9 175 77.7
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 3.3e-70 268.9 197 70.6
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 4.3e-70 268.5 202 71.8
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 4.3e-70 268.5 198 70.7
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 5.6e-70 268.1 158 84.2
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 7.3e-70 267.7 202 69.8
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 1.3e-69 266.9 210 69.5
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 1.3e-69 266.9 198 70.7
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 1.3e-69 266.9 287 54.0
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 2.1e-69 266.2 197 69.5
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 2.1e-69 266.2 201 70.6
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 2.8e-69 265.8 198 72.2
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 2.8e-69 265.8 210 69.0
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 2.8e-69 265.8 198 70.7
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 2.8e-69 265.8 196 70.4
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 2.8e-69 265.8 194 70.6
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 6.2e-69 264.6 170 79.4
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 1.8e-68 263.1 202 68.8
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 2.6e-67 259.2 203 66.0
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 3.4e-67 258.8 197 65.5
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 4.9e-66 255.0 175 72.6
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 5.4e-65 251.5 204 65.7
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 7.9e-64 247.7 159 79.2
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 8.7e-63 244.2 198 67.7
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 8.7e-63 244.2 128 99.2
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 9.6e-62 240.7 193 66.8
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 1.4e-60 236.9 166 71.1
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 2.1e-56 223.0 200 63.5
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 3.0e-55 219.2 162 71.6
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 5.1e-55 218.4 127 85.0
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 4.0e-52 208.8 197 55.3
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 6.9e-52 208.0 121 83.5
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 1.5e-51 206.8 206 58.3
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 3.4e-51 205.7 169 68.6
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 2.1e-48 196.4 194 56.7
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 1.8e-47 193.4 107 94.4
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 1.9e-46 189.9 120 78.3
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 9.6e-46 187.6 170 56.5
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 1.3e-45 187.2 185 51.9
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 8.2e-45 184.5 183 58.5
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.1e-44 184.1 151 60.3
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 3.1e-44 182.6 189 54.5
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 1.2e-43 180.6 97 91.8
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 4.3e-38 162.2 176 53.4
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 8.2e-37 157.9 89 83.1
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 5.3e-36 155.2 150 52.0
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 1.2e-35 154.1 172 48.8
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 4.6e-32 142.1 106 68.9
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.3e-29 134.0 173 47.4
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 4.1e-28 129.0 216 45.4
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 2.6e-19 99.8 72 66.7
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 2.6e-19 99.8 57 78.9
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 3.5e-19 99.4 76 65.8
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 1.0e-18 97.8 72 65.3
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 1.3e-18 97.4 98 57.1
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 4.2e-17 92.4 206 33.0
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 1.6e-16 90.5 180 32.8
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 1.1e-12 77.8 83 53.0
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 7.7e-11 71.6 62 59.7
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 2.2e-10 70.1 57 64.9
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 1.1e-09 67.8 40 82.5


User provided reference genes

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