Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g041780.3 Solanum lycopersicum HOM05D004744 ORTHO05D005655 0.0e+00 1198.3 621 100.0
Sopen08g011940 Solanum pennellii HOM05D004744 ORTHO05D005655 0.0e+00 1171.4 651 94.3
CAN.G326.4 Capsicum annuum HOM05D004744 ORTHO05D005655 2.4e-289 998.4 659 79.8
Nitab4.5_0002992g0040 Nicotiana tabacum HOM05D004744 ORTHO05D005655 4.5e-272 941.0 637 78.2
Nitab4.5_0005958g0020 Nicotiana tabacum HOM05D004744 ORTHO05D005655 1.4e-228 796.6 556 76.6
CAN.G435.2 Capsicum annuum HOM05D004744 ORTHO05D005655 2.6e-227 792.3 555 76.8
CSS0007985 Camellia sinensis var. sinensis HOM05D004744 ORTHO05D005655 3.1e-212 742.3 622 61.9
Actinidia13213 Actinidia chinensis HOM05D004744 ORTHO05D005655 2.9e-210 735.7 626 60.2
Oeu033353.1 Olea europaea HOM05D004744 ORTHO05D005655 6.4e-210 734.6 671 58.9
Rhsim02G0205700 Rhododendron simsii HOM05D004744 ORTHO05D005655 3.0e-207 725.7 629 59.5
GSVIVG01035922001 Vitis vinifera HOM05D004744 ORTHO05D005655 2.6e-203 712.6 632 59.3
TAR625G1411 Trochodendron aralioides HOM05D004744 ORTHO05D005655 2.7e-200 702.6 626 58.1
MSTRG.11596 Avicennia marina HOM05D004744 ORTHO05D005655 7.4e-198 694.5 642 58.3
Atru.chr7.2497 Acer truncatum HOM05D004744 ORTHO05D005655 1.3e-197 693.7 627 58.4
Migut.A00009 Erythranthe guttata HOM05D004744 ORTHO05D005655 1.6e-197 693.3 634 58.0
Gorai.010G116900 Gossypium raimondii HOM05D004744 ORTHO05D005655 6.3e-197 691.4 627 57.3
Cc08_g00230 Coffea canephora HOM05D004744 ORTHO05D005655 5.3e-196 688.3 639 56.5
Gohir.D06G101900 Gossypium hirsutum HOM05D004744 ORTHO05D005655 9.0e-196 687.6 625 57.1
QL02p020429 Quercus lobata HOM05D004744 ORTHO05D005655 9.0e-196 687.6 630 56.8
Thecc.09G019800 Theobroma cacao HOM05D004744 ORTHO05D005655 2.2e-194 682.9 633 55.6
Lsat_1_v5_gn_1_43821 Lactuca sativa HOM05D004744 ORTHO05D005655 1.0e-191 674.1 627 56.6
Ciclev10007726m.g Citrus clementina HOM05D004744 ORTHO05D005655 1.4e-191 673.7 641 55.4
Potri.018G022800 Populus trichocarpa HOM05D004744 ORTHO05D005655 3.9e-191 672.2 630 55.9
HanXRQChr01g0030631 Helianthus annuus HOM05D004744 ORTHO05D005655 8.8e-191 671.0 625 56.2
THA.LOC104805576 Tarenaya hassleriana HOM05D004744 ORTHO05D005655 7.4e-190 667.9 640 54.5
Lj8C731T12 Lonicera japonica HOM05D004744 ORTHO05D005655 2.2e-189 666.4 576 61.1
Aqoxy7G03541 Aquilegia oxysepala HOM05D004744 ORTHO05D005655 6.3e-189 664.8 625 53.9
Sabra18G0025200 Salix brachista HOM05D004744 ORTHO05D005655 3.4e-187 659.1 630 55.4
FAN20G1207 Fragaria x ananassa HOM05D004744 ORTHO05D005655 7.7e-187 657.9 628 53.5
CiPaw.08G008500 Carya illinoinensis HOM05D004744 ORTHO05D005655 2.2e-186 656.4 632 54.7
FvH4_2g28330 Fragaria vesca HOM05D004744 ORTHO05D005655 2.2e-186 656.4 628 54.0
FAN24G2392 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.9e-185 653.3 633 53.6
PGR142G3966 Punica granatum HOM05D004744 ORTHO05D005655 4.7e-184 648.7 640 53.6
MD15G1130500 Malus domestica HOM05D004744 ORTHO05D005655 7.9e-184 647.9 641 53.8
RcHm_v2.0_Chr6g0297241 Rosa chinensis HOM05D004744 ORTHO05D005655 1.8e-183 646.7 629 53.1
Haze_21464 Corylus avellana HOM05D004744 ORTHO05D005655 5.1e-183 645.2 665 52.8
FAN27G1080 Fragaria x ananassa HOM05D004744 ORTHO05D005655 5.1e-183 645.2 630 52.7
PSO063G6514 Papaver somniferum HOM05D004744 ORTHO05D005655 1.5e-182 643.7 634 53.9
ECA248G1191 Erigeron canadensis HOM05D004744 ORTHO05D005655 7.4e-182 641.3 643 52.9
Carub.0007s0850 Capsella rubella HOM05D004744 ORTHO05D005655 4.8e-181 638.6 627 55.5
Thhalv10024640m.g Eutrema salsugineum HOM05D004744 ORTHO05D005655 3.1e-180 636.0 636 54.4
SGA_v2.0_scaffold64G21986 Striga asiatica HOM05D004744 ORTHO05D005655 4.1e-180 635.6 661 52.3
AL7G19840 Arabidopsis lyrata HOM05D004744 ORTHO05D005655 1.5e-179 633.6 627 55.2
CANSAT01G0649 Cannabis sativa HOM05D004744 ORTHO05D005655 1.3e-178 630.6 628 52.9
CARHR239950 Cardamine hirsuta HOM05D004744 ORTHO05D005655 1.3e-178 630.6 629 54.5
Sp7g29850 Schrenkiella parvula HOM05D004744 ORTHO05D005655 2.9e-178 629.4 625 54.1
Psat5g030800 Pisum sativum HOM05D004744 ORTHO05D005655 3.8e-178 629.0 625 53.0
Ca_15759_v3 Cicer arietinum L. HOM05D004744 ORTHO05D005655 6.5e-178 628.2 640 51.1
Lj1g0018058 Lotus japonicus HOM05D004744 ORTHO05D005655 1.1e-177 627.5 631 51.3
BcaNung03134 Brassica carinata HOM05D004744 ORTHO05D005655 9.4e-177 624.4 621 53.9
MELO3C016990.2 Cucumis melo HOM05D004744 ORTHO05D005655 9.4e-177 624.4 626 52.1
C01p06880 Brassica napus HOM05D004744 ORTHO05D005655 1.6e-176 623.6 623 54.4
Lalb_Chr08g0244261 Lupinus albus HOM05D004744 ORTHO05D005655 3.6e-176 622.5 635 51.2
BcaC09g51994 Brassica carinata HOM05D004744 ORTHO05D005655 4.7e-176 622.1 631 53.6
A01p06240 Brassica napus HOM05D004744 ORTHO05D005655 4.7e-176 622.1 629 53.3
BolC1t00685H Brassica oleracea HOM05D004744 ORTHO05D005655 4.7e-176 622.1 631 53.6
BraA01t00591Z Brassica rapa HOM05D004744 ORTHO05D005655 1.4e-175 620.5 629 53.1
CsaV3_4G036900 Cucumis sativus L. HOM05D004744 ORTHO05D005655 3.0e-175 619.4 623 52.0
Dinv18156 Davidia involucrata HOM05D004744 ORTHO05D005655 8.8e-175 617.8 522 61.3
Aa31LG2G18030 Aethionema arabicum HOM05D004744 ORTHO05D005655 3.3e-174 615.9 614 53.6
ClCG05G016620 Citrullus lanatus HOM05D004744 ORTHO05D005655 7.4e-174 614.8 624 51.8
arahy.Tifrunner.gnm1.ann1.8I84Z2 Arachis hypogaea HOM05D004744 ORTHO05D005655 5.3e-172 608.6 643 50.1
Sed0024238 Sechium edule HOM05D004744 ORTHO05D005655 7.7e-171 604.7 623 50.7
AT4G32050 Arabidopsis thaliana HOM05D004744 ORTHO05D005655 2.9e-170 602.8 628 53.3
Glyma.02G173300 Glycine max HOM05D004744 ORTHO05D005655 3.8e-170 602.4 623 50.7
VMungo0720G0351 Vigna mungo HOM05D004744 ORTHO05D005655 1.9e-169 600.1 641 50.1
arahy.Tifrunner.gnm1.ann1.LGG0U4 Arachis hypogaea HOM05D004744 ORTHO05D005655 4.2e-169 599.0 643 50.1
vmacro11210 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 4.2e-169 599.0 517 60.2
TPR.G3127 Trifolium pratense HOM05D004744 ORTHO05D005655 9.4e-169 597.8 666 48.6
vmacro11211 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 9.4e-169 597.8 517 60.0
AUR62015365 Chenopodium quinoa HOM05D004744 ORTHO05D005655 4.7e-168 595.5 606 51.8
Glyma.02G001200 Glycine max HOM05D004744 ORTHO05D005655 8.0e-168 594.7 623 50.7
TWI32G0623 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 2.0e-166 590.1 590 54.4
DCAR_000582 Daucus carota HOM05D004744 ORTHO05D005655 2.6e-166 589.7 629 50.1
AUR62012029 Chenopodium quinoa HOM05D004744 ORTHO05D005655 7.5e-166 588.2 589 52.6
Cfa013106 Carpinus fangiana HOM05D004744 ORTHO05D005655 1.3e-165 587.4 570 55.4
Phvul.007G279700 Phaseolus vulgaris HOM05D004744 ORTHO05D005655 1.3e-165 587.4 656 48.5
Medtr3g106410 Medicago truncatula HOM05D004744 ORTHO05D005655 1.4e-164 583.9 632 49.5
Manes.03G012200 Manihot esculenta HOM05D004744 ORTHO05D005655 3.8e-162 575.9 570 53.5
CDE05G1537 Ceratophyllum demersum HOM05D004744 ORTHO05D005655 6.5e-162 575.1 632 49.4
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 4.0e-159 565.8 371 79.2
EL10Ac3g06914 Beta vulgaris HOM05D004744 ORTHO05D005655 1.4e-156 557.4 635 47.1
ATR0767G197 Amborella trichopoda HOM05D004744 ORTHO05D005655 3.3e-153 546.2 647 46.8
Cpa.g.sc187.24 Carica papaya HOM05D004744 ORTHO05D005655 1.6e-152 543.9 533 53.1
Hund06750 Selenicereus undatus HOM05D004744 ORTHO05D005655 1.7e-149 533.9 628 46.5
Prupe.1G485900 Prunus persica HOM05D004744 ORTHO05D005655 3.7e-149 532.7 571 50.8
Eucgr.C01702 Eucalyptus grandis HOM05D004744 ORTHO05D005655 9.2e-148 528.1 531 51.8
Sc20g0001320 Simmondsia chinensis HOM05D004744 ORTHO05D005655 1.2e-147 527.7 515 54.6
BcaC06g30946 Brassica carinata HOM05D004744 ORTHO05D005655 7.3e-145 518.5 620 48.2
Os02g0798700 Oryza sativa ssp. japonica HOM05D004744 ORTHO05D005655 7.3e-145 518.5 626 44.6
HPP92_003269 Vanilla planifolia HOM05D004744 ORTHO05D005655 1.2e-144 517.7 631 47.4
Lj1g0024423 Lotus japonicus HOM05D004744 ORTHO05D005655 3.6e-144 516.2 625 47.4
COL.COLO4_18910 Corchorus olitorius HOM05D004744 ORTHO05D005655 2.7e-139 500.0 422 59.5
RcHm_v2.0_Chr2g0139901 Rosa chinensis HOM05D004744 ORTHO05D005655 2.0e-134 483.8 606 46.7
Nn8g39704 Nelumbo nucifera HOM05D004744 ORTHO05D005655 2.9e-133 479.9 471 55.4
Gohir.A06G099700 Gossypium hirsutum HOM05D004744 ORTHO05D005655 1.0e-130 471.5 466 54.9
TPR.G21279 Trifolium pratense HOM05D004744 ORTHO05D005655 3.2e-116 423.3 629 41.5
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 1.1e-111 408.3 250 82.8
TPR.G21273 Trifolium pratense HOM05D004744 ORTHO05D005655 9.9e-110 401.7 563 41.7
Eucgr.C01625 Eucalyptus grandis HOM05D004744 ORTHO05D005655 8.7e-106 388.7 393 51.9
Zm00001eb257970 Zea mays HOM05D004744 ORTHO05D005655 5.6e-105 386.0 477 45.5
unitig_0.g2772 Utricularia gibba HOM05D004744 ORTHO05D005655 3.6e-104 383.3 598 40.5
TPR.G18367 Trifolium pratense HOM05D004744 ORTHO05D005655 3.8e-85 320.1 380 46.8
Pp3c12_9830 Physcomitrium patens HOM05D004744 ORTHO05D005655 3.5e-83 313.5 634 31.1
Mapoly0033s0067 Marchantia polymorpha HOM05D004744 ORTHO05D005655 1.3e-82 311.6 652 32.2
PGSC0003DMG400015627 Solanum tuberosum HOM05D004744 ORTHO05D005655 3.9e-82 310.1 163 96.3
SMO134G0198 Selaginella moellendorffii HOM05D004744 ORTHO05D005655 1.1e-81 308.5 598 31.8
C07p37210 Brassica napus HOM05D004744 ORTHO05D005655 9.1e-71 272.3 493 38.9
BolC7t44231H Brassica oleracea HOM05D004744 ORTHO05D005655 9.1e-71 272.3 493 38.9
AagrBONN_evm.TU.Sc2ySwM_117.465 Anthoceros agrestis HOM05D004744 ORTHO05D005655 6.1e-67 259.6 510 30.8
BcaC06g33762 Brassica carinata HOM05D004744 ORTHO05D005655 1.6e-59 235.0 367 40.9
vmacro12150 Vaccinium macrocarpon HOM05D000172 ORTHO05D000781 1.2e-54 218.8 391 39.9
Ah.14g079380 Amaranthus hybridus HOM05D004744 ORTHO05D005655 2.8e-48 197.6 186 52.7
BraA06t26993Z Brassica rapa HOM05D004744 ORTHO05D005655 7.0e-47 193.0 233 47.6
A06p40720 Brassica napus HOM05D004744 ORTHO05D005655 5.9e-46 189.9 233 47.2
CBR_g34813 Chara braunii HOM05D004744 ORTHO05D005655 2.9e-45 187.6 378 31.0
BolC8t47068H Brassica oleracea HOM05D004744 ORTHO05D005655 1.2e-38 165.6 155 57.4
C08p49950 Brassica napus HOM05D004744 ORTHO05D005655 7.7e-38 162.9 171 53.2
GSVIVG01011258001 Vitis vinifera HOM05D004744 ORTHO05D005655 3.3e-36 157.5 134 63.4
BcaC06g30944 Brassica carinata HOM05D004744 ORTHO05D005655 9.5e-36 156.0 165 48.5
DCAR_000575 Daucus carota HOM05D004744 ORTHO05D005655 1.4e-34 152.1 133 61.7
FAN14G1088 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.1e-31 142.5 410 29.3
Ah.14g079390 Amaranthus hybridus HOM05D004744 ORTHO05D005655 1.4e-31 142.1 220 39.5
BcaC07g41939 Brassica carinata HOM05D004744 ORTHO05D005655 5.9e-30 136.7 137 55.5
DCAR_000580 Daucus carota HOM05D004744 ORTHO05D005655 7.8e-30 136.3 168 39.9
SEGI_40333 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 1.0e-29 136.0 144 49.3
FAN09G4690 Fragaria x ananassa HOM05D004744 ORTHO05D005655 2.5e-28 131.3 377 30.8
FvH4_6g32120 Fragaria vesca HOM05D004744 ORTHO05D005655 2.1e-27 128.3 535 26.5
Pp3c4_13414 Physcomitrium patens HOM05D004744 ORTHO05D005655 2.8e-19 101.3 326 26.7
DCAR_000578 Daucus carota HOM05D004744 ORTHO05D005655 4.0e-18 97.4 120 40.0
COL.COLO4_18909 Corchorus olitorius HOM05D004744 ORTHO05D005655 1.5e-17 95.5 81 60.5
Cpa.g.sc187.23 Carica papaya HOM05D004744 ORTHO05D005655 3.4e-17 94.4 87 55.2
Eucgr.L02780 Eucalyptus grandis HOM05D004744 ORTHO05D005655 5.8e-17 93.6 56 73.2
SHI18507 Sapria himalayana HOM05D004744 ORTHO05D005655 4.9e-16 90.5 86 52.3
SEGI_39231 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 1.4e-15 89.0 155 32.3
SHI18506 Sapria himalayana HOM05D004744 ORTHO05D005655 4.1e-15 87.4 67 61.2
Cre07.g323650 Chlamydomonas reinhardtii HOM05D004744 ORTHO05D005655 3.0e-13 81.3 137 34.3
C08p02720 Brassica napus HOM05D004744 ORTHO05D005655 7.3e-12 76.6 71 56.3
TWI63G1552 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 9.5e-12 76.3 92 50.0
Dinv18155 Davidia involucrata HOM05D004744 ORTHO05D005655 7.6e-09 66.6 38 76.3
unitig_60.g25872 Utricularia gibba HOM05D004744 ORTHO05D005655 9.9e-09 66.2 52 63.5
BcaC06g36552 Brassica carinata HOM05D016909 ORTHO05D027203 2.2e-08 65.1 141 33.3
C07p02990 Brassica napus HOM05D016909 ORTHO05D027203 9.2e-07 59.7 104 39.4
Rhsim01G0220500 Rhododendron simsii HOM05D004744 ORTHO05D005655 1.6e-06 58.9 47 61.7
SEGI_21256 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 2.7e-06 58.2 82 40.2


User provided reference genes

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