Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g036413.1 Solanum lycopersicum HOM05D002155 ORTHO05D002215 5.0e-54 214.2 106 100.0
Solyc08g044243.1 Solanum lycopersicum HOM05D002053 ORTHO05D002215 6.4e-25 117.5 56 98.2
PGSC0003DMG400010645 Solanum tuberosum HOM05D002155 ORTHO05D002215 1.8e-19 99.4 56 78.6
Solyc04g040200.3 Solanum lycopersicum HOM05D002155 ORTHO05D002215 8.9e-19 97.1 56 75.0
CAN.G3404.1 Capsicum annuum HOM05D002155 ORTHO05D002215 2.0e-18 95.9 55 76.4
Nitab4.5_0003134g0050 Nicotiana tabacum HOM05D002155 ORTHO05D002215 2.0e-18 95.9 56 75.0
Sopen04g009930 Solanum pennellii HOM05D002155 ORTHO05D002215 3.4e-18 95.1 56 75.0
Lalb_Chr22g0357331 Lupinus albus HOM05D002155 ORTHO05D002215 1.3e-17 93.2 55 72.7
Sopen03g018010 Solanum pennellii HOM05D002155 ORTHO05D002215 1.7e-17 92.8 49 83.7
Glyma.03G128800 Glycine max HOM05D002155 ORTHO05D002215 2.2e-17 92.4 55 69.1
Peaxi162Scf00130g01323 Petunia axillaris HOM05D002155 ORTHO05D002215 4.9e-17 91.3 56 73.2
CiPaw.09G044300 Carya illinoinensis HOM05D002155 ORTHO05D002215 6.4e-17 90.9 55 65.5
Nitab4.5_0010323g0010 Nicotiana tabacum HOM05D002155 ORTHO05D002215 6.4e-17 90.9 56 69.6
Thecc.05G141300 Theobroma cacao HOM05D002155 ORTHO05D002215 1.1e-16 90.1 55 67.3
Glyma.19G131200 Glycine max HOM05D002155 ORTHO05D002215 1.4e-16 89.7 55 67.3
Potri.006G043166 Populus trichocarpa HOM05D002155 ORTHO05D002215 1.4e-16 89.7 52 69.2
Sabra06G0029400 Salix brachista HOM05D002155 ORTHO05D002215 1.4e-16 89.7 58 62.1
CARHR084700 Cardamine hirsuta HOM05D002155 ORTHO05D002215 1.9e-16 89.4 55 69.1
PGR031G2191 Punica granatum HOM05D002155 ORTHO05D002215 1.9e-16 89.4 54 70.4
TAR369G0889 Trochodendron aralioides HOM05D002155 ORTHO05D002215 1.9e-16 89.4 56 67.9
Actinidia39174 Actinidia chinensis HOM05D002155 ORTHO05D002215 2.4e-16 89.0 56 69.6
Sp3g08490 Schrenkiella parvula HOM05D002155 ORTHO05D002215 2.4e-16 89.0 55 69.1
GSVIVG01033575001 Vitis vinifera HOM05D002155 ORTHO05D002215 2.4e-16 89.0 55 69.1
Haze_19736 Corylus avellana HOM05D002155 ORTHO05D002215 3.2e-16 88.6 55 63.6
Lj1g0005899 Lotus japonicus HOM05D002155 ORTHO05D002215 3.2e-16 88.6 55 67.3
Prupe.7G046200 Prunus persica HOM05D002155 ORTHO05D002215 3.2e-16 88.6 54 64.8
QL07p006615 Quercus lobata HOM05D002155 ORTHO05D002215 3.2e-16 88.6 56 62.5
Sc13g0001360 Simmondsia chinensis HOM05D002155 ORTHO05D002215 3.2e-16 88.6 55 69.1
TWI77G0735 Tripterygium wilfordii HOM05D002155 ORTHO05D002215 3.2e-16 88.6 55 63.6
Aa31LG3G2770 Aethionema arabicum HOM05D002155 ORTHO05D002215 4.1e-16 88.2 56 67.9
CSS0023588 Camellia sinensis var. sinensis HOM05D002155 ORTHO05D002215 4.1e-16 88.2 55 69.1
CSS0035118 Camellia sinensis var. sinensis HOM05D002155 ORTHO05D002215 4.1e-16 88.2 55 69.1
Eucgr.A02266 Eucalyptus grandis HOM05D002155 ORTHO05D002215 4.1e-16 88.2 56 62.5
TAR369G0478 Trochodendron aralioides HOM05D002155 ORTHO05D002215 4.1e-16 88.2 56 67.9
CANSAT80G0393 Cannabis sativa HOM05D002155 ORTHO05D002215 5.4e-16 87.8 55 65.5
CANSAT80G0737 Cannabis sativa HOM05D002155 ORTHO05D002215 5.4e-16 87.8 55 65.5
Thhalv10021434m.g Eutrema salsugineum HOM05D002155 ORTHO05D002215 5.4e-16 87.8 55 67.3
Lj1A1107T59 Lonicera japonica HOM05D002155 ORTHO05D002215 5.4e-16 87.8 55 69.1
BcaNung05524 Brassica carinata HOM05D002155 ORTHO05D002215 7.1e-16 87.4 55 67.3
A05p38890 Brassica napus HOM05D002155 ORTHO05D002215 7.1e-16 87.4 55 67.3
C05p57930 Brassica napus HOM05D002155 ORTHO05D002215 7.1e-16 87.4 55 67.3
BolC5t34448H Brassica oleracea HOM05D002155 ORTHO05D002215 7.1e-16 87.4 55 67.3
BraA05t22681Z Brassica rapa HOM05D002155 ORTHO05D002215 7.1e-16 87.4 55 67.3
Cc06_g18600 Coffea canephora HOM05D002155 ORTHO05D002215 7.1e-16 87.4 55 69.1
Aqoxy2G03782 Aquilegia oxysepala HOM05D002155 ORTHO05D002215 9.2e-16 87.0 55 69.1
AL3G21550 Arabidopsis lyrata HOM05D002155 ORTHO05D002215 9.2e-16 87.0 55 65.5
Ca_08397_v3 Cicer arietinum L. HOM05D002155 ORTHO05D002215 9.2e-16 87.0 55 67.3
Ca_30854_v3 Cicer arietinum L. HOM05D002155 ORTHO05D002215 9.2e-16 87.0 55 67.3
Solyc09g150131.1 Solanum lycopersicum HOM05D064761 ORTHO05D000220 9.2e-16 87.0 81 61.7
VMungo1383G2166 Vigna mungo HOM05D002155 ORTHO05D002215 9.2e-16 87.0 55 65.5
AT3G10210 Arabidopsis thaliana HOM05D002155 ORTHO05D002215 1.2e-15 86.7 55 67.3
Dinv18488 Davidia involucrata HOM05D002155 ORTHO05D002215 1.2e-15 86.7 55 65.5
Gohir.D09G115456 Gossypium hirsutum HOM05D002155 ORTHO05D002215 1.2e-15 86.7 52 65.4
Gorai.006G133400 Gossypium raimondii HOM05D002155 ORTHO05D002215 1.2e-15 86.7 52 65.4
Psat3g078280 Pisum sativum HOM05D002155 ORTHO05D002215 1.2e-15 86.7 55 67.3
Cfa016726 Carpinus fangiana HOM05D002155 ORTHO05D002215 1.6e-15 86.3 55 63.6
COL.COLO4_33940 Corchorus olitorius HOM05D002155 ORTHO05D002215 1.6e-15 86.3 55 65.5
Rhsim03G0034600 Rhododendron simsii HOM05D002155 ORTHO05D002215 1.6e-15 86.3 55 65.5
RhsimUnG0217400 Rhododendron simsii HOM05D002155 ORTHO05D002215 1.6e-15 86.3 55 65.5
THA.LOC104816409 Tarenaya hassleriana HOM05D002155 ORTHO05D002215 1.6e-15 86.3 55 65.5
Gohir.A09G118800 Gossypium hirsutum HOM05D002155 ORTHO05D002215 2.1e-15 85.9 52 65.4
SalBow1G8309 Salvia bowleyana HOM05D002155 ORTHO05D002215 2.1e-15 85.9 55 63.6
Sed0001007 Sechium edule HOM05D002155 ORTHO05D002215 2.1e-15 85.9 56 64.3
Aqoxy2G00326 Aquilegia oxysepala HOM05D002155 ORTHO05D002215 2.7e-15 85.5 55 67.3
CSS0037446 Camellia sinensis var. sinensis HOM05D002155 ORTHO05D002215 2.7e-15 85.5 52 67.3
Carub.0003s0938 Capsella rubella HOM05D002155 ORTHO05D002215 2.7e-15 85.5 55 63.6
Nn7g36581 Nelumbo nucifera HOM05D002155 ORTHO05D002215 2.7e-15 85.5 54 66.7
Phvul.001G124200 Phaseolus vulgaris HOM05D002155 ORTHO05D002215 2.7e-15 85.5 55 63.6
Phvul.001G124500 Phaseolus vulgaris HOM05D002155 ORTHO05D002215 2.7e-15 85.5 55 63.6
TPR.G30625 Trifolium pratense HOM05D002155 ORTHO05D002215 2.7e-15 85.5 55 65.5
vmacro07824 Vaccinium macrocarpon HOM05D002155 ORTHO05D002215 2.7e-15 85.5 55 65.5
EL10Ac3g07191 Beta vulgaris HOM05D002155 ORTHO05D002215 4.6e-15 84.7 55 63.6
MD00G1074100 Malus domestica HOM05D002155 ORTHO05D002215 4.6e-15 84.7 54 63.0
Manes.09G008300 Manihot esculenta HOM05D002155 ORTHO05D002215 4.6e-15 84.7 55 61.8
TAR623G0170 Trochodendron aralioides HOM05D002155 ORTHO05D002215 4.6e-15 84.7 55 65.5
Hund19111 Selenicereus undatus HOM05D002155 ORTHO05D002215 6.0e-15 84.3 55 61.8
Atru.chr1.1285 Acer truncatum HOM05D002155 ORTHO05D002215 1.0e-14 83.6 55 60.0
arahy.Tifrunner.gnm1.ann1.T9DT73 Arachis hypogaea HOM05D002155 ORTHO05D002215 1.0e-14 83.6 55 61.8
arahy.Tifrunner.gnm1.ann1.XXX690 Arachis hypogaea HOM05D002155 ORTHO05D002215 1.0e-14 83.6 55 61.8
Ciclev10005702m.g Citrus clementina HOM05D002155 ORTHO05D002215 1.0e-14 83.6 54 63.0
Duzib106G1363 Durio zibethinus HOM05D002155 ORTHO05D002215 1.0e-14 83.6 55 61.8
Sed0014451 Sechium edule HOM05D002155 ORTHO05D002215 1.0e-14 83.6 56 64.3
DCAR_016873 Daucus carota HOM05D002155 ORTHO05D002215 1.3e-14 83.2 55 60.0
MSTRG.26135 Avicennia marina HOM05D002155 ORTHO05D002215 1.7e-14 82.8 52 65.4
CDE10G1340 Ceratophyllum demersum HOM05D002155 ORTHO05D002215 1.7e-14 82.8 52 65.4
Migut.K00108 Erythranthe guttata HOM05D002155 ORTHO05D002215 1.7e-14 82.8 55 60.0
Oeu008199.1 Olea europaea HOM05D002155 ORTHO05D002215 1.7e-14 82.8 56 66.1
RcHm_v2.0_Chr2g0124961 Rosa chinensis HOM05D002155 ORTHO05D002215 1.7e-14 82.8 54 59.3
FvH4_6g25120 Fragaria vesca HOM05D002155 ORTHO05D002215 2.3e-14 82.4 54 59.3
FAN05G4024 Fragaria x ananassa HOM05D002155 ORTHO05D002215 2.3e-14 82.4 54 59.3
FAN09G0789 Fragaria x ananassa HOM05D002155 ORTHO05D002215 2.3e-14 82.4 54 59.3
FAN14G5029 Fragaria x ananassa HOM05D002155 ORTHO05D002215 2.3e-14 82.4 54 59.3
PSO754G0070 Papaver somniferum HOM05D002155 ORTHO05D002215 2.3e-14 82.4 55 60.0
SGA_v2.0_scaffold94G28500 Striga asiatica HOM05D002155 ORTHO05D002215 2.3e-14 82.4 55 63.6
MBI19_g17539_MAGBIO Magnolia biondii HOM05D002155 ORTHO05D002215 3.0e-14 82.0 52 65.4
MELO3C009777.2 Cucumis melo HOM05D002155 ORTHO05D002215 3.9e-14 81.6 56 60.7
CsaV3_3G040430 Cucumis sativus L. HOM05D002155 ORTHO05D002215 3.9e-14 81.6 56 60.7
Cpa.g.sc5.197 Carica papaya HOM05D002155 ORTHO05D002215 8.6e-14 80.5 55 61.8
Medtr7g090050 Medicago truncatula HOM05D002155 ORTHO05D002215 8.6e-14 80.5 55 60.0
ATR0721G032 Amborella trichopoda HOM05D002155 ORTHO05D002215 1.1e-13 80.1 55 61.8
Hma1.2p1_0056F.1_g031860 Hydrangea macrophylla HOM05D002155 ORTHO05D002215 1.5e-13 79.7 52 65.4
Solyc11g056590.2 Solanum lycopersicum HOM05D000074 ORTHO05D000220 1.5e-13 79.7 47 87.2
PSO063G2722 Papaver somniferum HOM05D002155 ORTHO05D002215 1.9e-13 79.3 54 57.4
AUR62030364 Chenopodium quinoa HOM05D002155 ORTHO05D002215 3.3e-13 78.6 55 61.8
AUR62040847 Chenopodium quinoa HOM05D002155 ORTHO05D002215 3.3e-13 78.6 55 61.8
Ah.04g151140 Amaranthus hybridus HOM05D002155 ORTHO05D002215 4.3e-13 78.2 55 58.2
HanXRQChr10g0292831 Helianthus annuus HOM05D002155 ORTHO05D002215 9.5e-13 77.0 55 60.0
Lsat_1_v5_gn_9_30000 Lactuca sativa HOM05D002155 ORTHO05D002215 1.2e-12 76.6 55 60.0
Zm00001eb363130 Zea mays HOM05D002155 ORTHO05D002215 1.1e-11 73.6 54 59.3
unitig_736.g22288 Utricularia gibba HOM05D002155 ORTHO05D002215 1.4e-11 73.2 55 56.4
Os01g0948300 Oryza sativa ssp. japonica HOM05D002155 ORTHO05D002215 1.8e-11 72.8 52 57.7
MD00G1048900 Malus domestica HOM05D002155 ORTHO05D002215 3.1e-11 72.0 54 55.6
Zm00001eb141230 Zea mays HOM05D002155 ORTHO05D002215 3.1e-11 72.0 52 59.6
HPP92_000807 Vanilla planifolia HOM05D000181 ORTHO05D003134 1.5e-10 69.7 52 53.8
SEGI_11498 Sequoiadendron giganteum HOM05D002155 ORTHO05D002215 1.9e-08 62.8 52 48.1
AagrBONN_evm.TU.Sc2ySwM_228.428 Anthoceros agrestis HOM05D002155 ORTHO05D002215 2.7e-07 58.9 52 50.0
Potri.005G246800 Populus trichocarpa HOM05D002155 ORTHO05D002215 5.1e-06 54.7 51 51.0
Sopen09g019500 Solanum pennellii HOM05D002155 ORTHO05D002215 5.1e-06 54.7 27 81.5
GSVIVG01008718001 Vitis vinifera HOM05D002155 ORTHO05D002215 6.6e-06 54.3 52 50.0


User provided reference genes

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