Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g029270.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 6.6e-33 143.3 65 100.0
AL3G44470 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 3.4e-21 104.4 64 73.4
BcaC09g49589 Brassica carinata HOM05D003783 ORTHO05D004568 3.4e-21 104.4 64 73.4
CARHR283230 Cardamine hirsuta HOM05D003783 ORTHO05D004568 3.4e-21 104.4 64 73.4
Sp3g25860 Schrenkiella parvula HOM05D003783 ORTHO05D004568 3.4e-21 104.4 64 73.4
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.4e-21 104.4 64 73.4
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.4e-21 104.4 64 73.4
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.4e-21 104.4 64 73.4
BraSC177t45761Z Brassica rapa HOM05D003783 ORTHO05D004568 1.0e-20 102.8 63 73.0
BraSC48t46228Z Brassica rapa HOM05D003783 ORTHO05D004568 1.0e-20 102.8 63 73.0
BraSC48t46298Z Brassica rapa HOM05D003783 ORTHO05D004568 1.0e-20 102.8 63 73.0
BraSC48t46316Z Brassica rapa HOM05D003783 ORTHO05D004568 1.0e-20 102.8 63 73.0
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 1.0e-20 102.8 63 73.0
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.0e-20 102.8 64 71.9
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 1.3e-20 102.4 64 71.9
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 1.3e-20 102.4 64 71.9
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 1.7e-20 102.1 64 71.9
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 1.7e-20 102.1 64 71.9
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 2.9e-20 101.3 64 70.3
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 2.9e-20 101.3 64 70.3
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 2.9e-20 101.3 64 70.3
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 2.9e-20 101.3 64 70.3
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 2.9e-20 101.3 64 70.3
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 2.9e-20 101.3 64 70.3
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 6.5e-20 100.1 64 70.3
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 6.5e-20 100.1 64 70.3
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 6.5e-20 100.1 64 70.3
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 6.5e-20 100.1 64 70.3
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 6.5e-20 100.1 64 70.3
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 6.5e-20 100.1 64 70.3
Lsat_1_v5_gn_4_139080 Lactuca sativa HOM05D003783 ORTHO05D004568 6.5e-20 100.1 64 70.3
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 6.5e-20 100.1 64 70.3
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 6.5e-20 100.1 64 70.3
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 6.5e-20 100.1 64 70.3
C01p34860 Brassica napus HOM05D003783 ORTHO05D004568 8.4e-20 99.8 64 68.8
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 1.1e-19 99.4 64 68.8
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 1.4e-19 99.0 64 70.3
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.4e-19 99.0 64 70.3
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.4e-19 99.0 64 70.3
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.4e-19 99.0 64 70.3
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 3.2e-19 97.8 64 68.8
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 3.2e-19 97.8 64 67.2
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 3.2e-19 97.8 64 70.3
C01p34760 Brassica napus HOM05D003783 ORTHO05D004568 4.2e-19 97.4 64 68.8
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 4.2e-19 97.4 64 68.8
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 5.5e-19 97.1 64 68.8
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 5.5e-19 97.1 64 68.8
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 5.5e-19 97.1 63 69.8
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 9.3e-19 96.3 64 68.8
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 1.6e-18 95.5 64 67.2
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 2.1e-18 95.1 64 67.2
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 2.7e-18 94.7 64 67.2
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 2.7e-18 94.7 64 67.2
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 2.7e-18 94.7 64 67.2
TPR.G22134 Trifolium pratense HOM05D003783 ORTHO05D004568 2.7e-18 94.7 64 67.2
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 3.5e-18 94.4 65 69.2
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.0e-17 92.8 63 66.7
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.0e-17 92.8 63 66.7
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 1.3e-17 92.4 63 66.7
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 1.8e-17 92.0 64 65.6
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 3.9e-17 90.9 64 65.6
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 5.1e-17 90.5 64 65.6
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 6.7e-17 90.1 64 64.1
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 8.7e-17 89.7 58 72.4
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 1.1e-16 89.4 64 64.1
BolC1t03452H Brassica oleracea HOM05D003783 ORTHO05D004568 1.5e-16 89.0 56 69.6
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 2.5e-16 88.2 64 64.1
HanXRQChr01g0013391 Helianthus annuus HOM05D003783 ORTHO05D004568 4.3e-16 87.4 54 72.2
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 5.7e-16 87.0 64 62.5
PSO675G6716 Papaver somniferum HOM05D003783 ORTHO05D004568 9.6e-16 86.3 63 63.5
PSO782G0649 Papaver somniferum HOM05D003783 ORTHO05D004568 9.6e-16 86.3 63 63.5
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 1.3e-15 85.9 61 65.6
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.1e-15 85.1 58 70.7
PSO135G0232 Papaver somniferum HOM05D003783 ORTHO05D004568 8.2e-15 83.2 63 61.9
Lj2P1232T100 Lonicera japonica HOM05D003783 ORTHO05D004568 1.1e-14 82.8 51 72.5
ATR1173G003 Amborella trichopoda HOM05D003783 ORTHO05D004568 3.1e-14 81.3 64 59.4
Lalb_Chr11g0068271 Lupinus albus HOM05D003783 ORTHO05D004568 2.6e-13 78.2 60 60.0
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 3.4e-13 77.8 49 69.4
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 3.4e-13 77.8 49 69.4
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 1.9e-11 72.0 63 57.1
AT2G07768 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 3.0e-09 64.7 39 76.9
BraSC54t46361Z Brassica rapa HOM05D003783 ORTHO05D004568 8.7e-09 63.2 38 76.3
ClCG09G015160 Citrullus lanatus HOM05D003783 ORTHO05D004568 1.5e-08 62.4 40 72.5
BolSC28t60306H Brassica oleracea HOM05D003783 ORTHO05D004568 2.5e-08 61.6 58 55.2
BolSC28t60363H Brassica oleracea HOM05D003783 ORTHO05D004568 2.5e-08 61.6 58 55.2
Lalb_Chr22g0357821 Lupinus albus HOM05D003783 ORTHO05D004568 3.3e-08 61.2 44 59.1
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 9.7e-08 59.7 58 53.4
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 9.7e-08 59.7 58 53.4
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.2e-07 58.5 40 60.0
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 1.1e-06 56.2 32 71.9
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 1.4e-06 55.8 64 48.4
CAN.G134.19 Capsicum annuum HOM05D003783 ORTHO05D004568 2.4e-06 55.1 32 71.9
BolC1t03443H Brassica oleracea HOM05D003783 ORTHO05D004568 3.1e-06 54.7 35 71.4


User provided reference genes

Program Settings