Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g023580.4 Solanum lycopersicum HOM05D000792 ORTHO05D004195 6.1e-117 424.1 204 100.0
Sopen08g008890 Solanum pennellii HOM05D000792 ORTHO05D004195 9.1e-113 410.2 198 98.5
Peaxi162Scf00071g00939 Petunia axillaris HOM05D000792 ORTHO05D004195 2.8e-101 372.1 198 88.9
Nitab4.5_0000245g0030 Nicotiana tabacum HOM05D000792 ORTHO05D004195 2.0e-99 365.9 198 86.9
Nitab4.5_0006443g0030 Nicotiana tabacum HOM05D000792 ORTHO05D004195 2.9e-98 362.1 198 85.9
Peaxi162Scf00225g00310 Petunia axillaris HOM05D000792 ORTHO05D004195 5.4e-97 357.8 198 83.8
Solyc01g098090.3 Solanum lycopersicum HOM05D000792 ORTHO05D004195 1.6e-96 356.3 198 83.3
Sopen01g041660 Solanum pennellii HOM05D000792 ORTHO05D004195 1.6e-96 356.3 198 83.3
CSS0015984 Camellia sinensis var. sinensis HOM05D000792 ORTHO05D004195 3.5e-96 355.1 198 83.3
CSS0038276 Camellia sinensis var. sinensis HOM05D000792 ORTHO05D004195 3.5e-96 355.1 198 83.3
Nitab4.5_0000087g0250 Nicotiana tabacum HOM05D000792 ORTHO05D004195 1.3e-95 353.2 198 86.4
Actinidia05754 Actinidia chinensis HOM05D000792 ORTHO05D004195 3.9e-95 351.7 198 83.3
Dinv17744 Davidia involucrata HOM05D000792 ORTHO05D004195 8.6e-95 350.5 198 82.8
Cpa.g.sc117.38 Carica papaya HOM05D000792 ORTHO05D004195 1.9e-94 349.4 198 80.8
MD04G1217000 Malus domestica HOM05D000792 ORTHO05D004195 4.3e-94 348.2 198 80.8
MD12G1233700 Malus domestica HOM05D000792 ORTHO05D004195 7.3e-94 347.4 198 81.3
SalBow5G1543 Salvia bowleyana HOM05D000792 ORTHO05D004195 1.2e-93 346.7 198 80.3
Prupe.6G336900 Prunus persica HOM05D000792 ORTHO05D004195 1.6e-93 346.3 198 80.3
Dinv03363 Davidia involucrata HOM05D000792 ORTHO05D004195 2.8e-93 345.5 198 81.3
GSVIVG01021896001 Vitis vinifera HOM05D000792 ORTHO05D004195 1.1e-92 343.6 198 80.8
EL10Ac4g09219 Beta vulgaris HOM05D000792 ORTHO05D004195 2.3e-92 342.4 198 79.8
CSS0043695 Camellia sinensis var. sinensis HOM05D000792 ORTHO05D004195 2.3e-92 342.4 198 81.3
Rhsim05G0148700 Rhododendron simsii HOM05D000792 ORTHO05D004195 2.3e-92 342.4 198 80.8
Thecc.05G291700 Theobroma cacao HOM05D000792 ORTHO05D004195 4.0e-92 341.7 198 79.8
Atru.chr2.653 Acer truncatum HOM05D000792 ORTHO05D004195 5.2e-92 341.3 198 80.8
Migut.K00761 Erythranthe guttata HOM05D000792 ORTHO05D004195 5.2e-92 341.3 198 79.8
CSS0027954 Camellia sinensis var. sinensis HOM05D000792 ORTHO05D004195 1.2e-91 340.1 198 80.8
FAN14G0951 Fragaria x ananassa HOM05D000792 ORTHO05D004195 1.2e-91 340.1 197 79.7
Cc02_g31260 Coffea canephora HOM05D000792 ORTHO05D004195 1.5e-91 339.7 198 81.3
Manes.08G126500 Manihot esculenta HOM05D000792 ORTHO05D004195 3.4e-91 338.6 198 79.3
MELO3C004353.2 Cucumis melo HOM05D000792 ORTHO05D004195 4.4e-91 338.2 198 77.8
FvH4_6g03981 Fragaria vesca HOM05D000792 ORTHO05D004195 5.8e-91 337.8 197 79.2
RcHm_v2.0_Chr3g0452571 Rosa chinensis HOM05D000792 ORTHO05D004195 7.5e-91 337.4 197 78.7
Potri.005G046500 Populus trichocarpa HOM05D000792 ORTHO05D004195 1.3e-90 336.7 198 78.8
Ciclev10000367m.g Citrus clementina HOM05D000792 ORTHO05D004195 1.7e-90 336.3 198 78.8
CsaV3_2G004410 Cucumis sativus L. HOM05D000792 ORTHO05D004195 2.2e-90 335.9 198 77.3
FAN05G0287 Fragaria x ananassa HOM05D000792 ORTHO05D004195 2.2e-90 335.9 197 78.7
TWI36G0731 Tripterygium wilfordii HOM05D000792 ORTHO05D004195 2.2e-90 335.9 198 79.8
Ah.06g192810 Amaranthus hybridus HOM05D000792 ORTHO05D004195 2.9e-90 335.5 198 77.3
TAR636G2564 Trochodendron aralioides HOM05D000792 ORTHO05D004195 2.9e-90 335.5 198 77.3
Eucgr.H04403 Eucalyptus grandis HOM05D000792 ORTHO05D004195 4.9e-90 334.7 198 77.8
FAN09G2107 Fragaria x ananassa HOM05D000792 ORTHO05D004195 4.9e-90 334.7 197 78.7
PGR004G0598 Punica granatum HOM05D000792 ORTHO05D004195 4.9e-90 334.7 201 79.6
Sc09g0003670 Simmondsia chinensis HOM05D000792 ORTHO05D004195 4.9e-90 334.7 198 76.8
arahy.Tifrunner.gnm1.ann1.JA3EPN Arachis hypogaea HOM05D000792 ORTHO05D004195 6.4e-90 334.3 198 77.8
FAN05G4969 Fragaria x ananassa HOM05D000792 ORTHO05D004195 8.3e-90 334.0 197 78.2
arahy.Tifrunner.gnm1.ann1.GRVM6J Arachis hypogaea HOM05D000792 ORTHO05D004195 1.1e-89 333.6 198 77.8
QL03p000120 Quercus lobata HOM05D000792 ORTHO05D004195 1.1e-89 333.6 198 78.8
Gohir.D13G176800 Gossypium hirsutum HOM05D000792 ORTHO05D004195 1.4e-89 333.2 198 78.3
Gorai.013G202200 Gossypium raimondii HOM05D000792 ORTHO05D004195 1.4e-89 333.2 198 78.3
Sed0009127 Sechium edule HOM05D000792 ORTHO05D004195 1.4e-89 333.2 199 77.4
Duzib177G0519 Durio zibethinus HOM05D000792 ORTHO05D004195 1.9e-89 332.8 198 77.8
Gohir.D13G109000 Gossypium hirsutum HOM05D000792 ORTHO05D004195 1.9e-89 332.8 200 77.5
Gohir.A13G171400 Gossypium hirsutum HOM05D000792 ORTHO05D004195 2.4e-89 332.4 198 78.3
FAN02G1626 Fragaria x ananassa HOM05D000792 ORTHO05D004195 3.2e-89 332.0 197 78.7
Gorai.013G122600 Gossypium raimondii HOM05D000792 ORTHO05D004195 4.1e-89 331.6 200 77.0
Hund22093 Selenicereus undatus HOM05D000792 ORTHO05D004195 4.1e-89 331.6 199 77.9
Potri.013G033800 Populus trichocarpa HOM05D000792 ORTHO05D004195 5.4e-89 331.3 198 78.3
Oeu004838.1 Olea europaea HOM05D000792 ORTHO05D004195 7.1e-89 330.9 206 76.7
Gohir.D11G267100 Gossypium hirsutum HOM05D000792 ORTHO05D004195 9.2e-89 330.5 198 77.3
MSTRG.3420 Avicennia marina HOM05D000792 ORTHO05D004195 1.2e-88 330.1 198 77.8
Gorai.007G286900 Gossypium raimondii HOM05D000792 ORTHO05D004195 2.1e-88 329.3 198 76.8
Sabra13G0033000 Salix brachista HOM05D000792 ORTHO05D004195 2.1e-88 329.3 200 78.0
Duzib106G0823 Durio zibethinus HOM05D000792 ORTHO05D004195 2.7e-88 328.9 198 78.8
Duzib128G1364 Durio zibethinus HOM05D000792 ORTHO05D004195 3.5e-88 328.6 198 77.8
VMungo0540G1958 Vigna mungo HOM05D000792 ORTHO05D004195 3.5e-88 328.6 198 76.8
CiPaw.08G177700 Carya illinoinensis HOM05D000792 ORTHO05D004195 4.6e-88 328.2 198 77.3
DCAR_029743 Daucus carota HOM05D000792 ORTHO05D004195 6.0e-88 327.8 198 74.7
Gohir.A13G106300 Gossypium hirsutum HOM05D000792 ORTHO05D004195 6.0e-88 327.8 197 77.2
Manes.09G158100 Manihot esculenta HOM05D000792 ORTHO05D004195 1.0e-87 327.0 198 77.8
Sabra05G0042400 Salix brachista HOM05D000792 ORTHO05D004195 1.3e-87 326.6 198 75.8
TWI12G0870 Tripterygium wilfordii HOM05D000792 ORTHO05D004195 1.7e-87 326.2 198 76.8
Nn3g21306 Nelumbo nucifera HOM05D000792 ORTHO05D004195 3.0e-87 325.5 198 75.8
Glyma.03G243800 Glycine max HOM05D000792 ORTHO05D004195 3.9e-87 325.1 198 74.7
SGA_v2.0_scaffold15G07272 Striga asiatica HOM05D000792 ORTHO05D004195 3.9e-87 325.1 199 76.4
Glyma.19G241800 Glycine max HOM05D000792 ORTHO05D004195 8.6e-87 323.9 198 75.8
TAR365G0075 Trochodendron aralioides HOM05D000792 ORTHO05D004195 8.6e-87 323.9 197 75.6
Glyma.03G244500 Glycine max HOM05D000792 ORTHO05D004195 1.5e-86 323.2 198 75.8
Psat3g008760 Pisum sativum HOM05D000792 ORTHO05D004195 1.5e-86 323.2 198 77.3
Sed0026552 Sechium edule HOM05D000792 ORTHO05D004195 1.9e-86 322.8 199 74.9
CiPaw.07G009200 Carya illinoinensis HOM05D000792 ORTHO05D004195 2.5e-86 322.4 198 76.3
Gohir.A11G257200 Gossypium hirsutum HOM05D000792 ORTHO05D004195 3.3e-86 322.0 198 75.8
HanXRQChr14g0429451 Helianthus annuus HOM05D000792 ORTHO05D004195 1.2e-85 320.1 198 75.3
Phvul.006G097800 Phaseolus vulgaris HOM05D000792 ORTHO05D004195 2.1e-85 319.3 198 74.7
VMungo0540G0969 Vigna mungo HOM05D000792 ORTHO05D004195 3.6e-85 318.5 198 75.3
Phvul.006G098200 Phaseolus vulgaris HOM05D000792 ORTHO05D004195 4.7e-85 318.2 198 74.7
Gohir.D08G230900 Gossypium hirsutum HOM05D000792 ORTHO05D004195 1.8e-84 316.2 198 74.7
Gorai.004G245300 Gossypium raimondii HOM05D000792 ORTHO05D004195 1.8e-84 316.2 198 74.7
Lj7C479G6 Lonicera japonica HOM05D000792 ORTHO05D004195 2.3e-84 315.8 201 74.1
Oeu003790.1 Olea europaea HOM05D000792 ORTHO05D004195 3.1e-84 315.5 198 73.7
Ca_09396_v3 Cicer arietinum L. HOM05D000792 ORTHO05D004195 6.8e-84 314.3 200 75.5
Lj1g0010529 Lotus japonicus HOM05D000792 ORTHO05D004195 2.0e-83 312.8 198 73.2
Glyma.19G241300 Glycine max HOM05D000792 ORTHO05D004195 2.6e-83 312.4 198 73.2
HanXRQChr16g0498011 Helianthus annuus HOM05D000792 ORTHO05D004195 4.4e-83 311.6 198 71.2
TPR.G7014 Trifolium pratense HOM05D000792 ORTHO05D004195 9.9e-83 310.5 198 74.2
Gohir.A08G213900 Gossypium hirsutum HOM05D000792 ORTHO05D004195 1.3e-82 310.1 198 72.7
Lsat_1_v5_gn_8_29340 Lactuca sativa HOM05D000792 ORTHO05D004195 1.3e-82 310.1 202 71.8
Ca_10069_v3 Cicer arietinum L. HOM05D000792 ORTHO05D004195 2.9e-82 308.9 198 72.7
Medtr7g114370 Medicago truncatula HOM05D000792 ORTHO05D004195 6.4e-82 307.8 198 73.2
Lj5g0000884 Lotus japonicus HOM05D000792 ORTHO05D004195 8.4e-82 307.4 198 71.7
Psat0s4348g0040 Pisum sativum HOM05D000792 ORTHO05D004195 2.4e-81 305.8 198 70.2
Medtr1g081830 Medicago truncatula HOM05D000792 ORTHO05D004195 1.6e-80 303.1 198 70.2
ATR0772G088 Amborella trichopoda HOM05D000792 ORTHO05D004195 1.3e-79 300.1 199 67.8
ECA233G2068 Erigeron canadensis HOM05D000792 ORTHO05D004195 2.3e-79 299.3 198 71.2
Lalb_Chr15g0076961 Lupinus albus HOM05D000792 ORTHO05D004195 3.9e-79 298.5 198 70.2
Lalb_Chr18g0045241 Lupinus albus HOM05D000792 ORTHO05D004195 5.1e-79 298.1 198 69.7
arahy.Tifrunner.gnm1.ann1.GH6CGE Arachis hypogaea HOM05D000792 ORTHO05D004195 1.1e-78 297.0 198 69.7
HPP92_016897 Vanilla planifolia HOM05D000792 ORTHO05D004195 1.1e-78 297.0 198 68.2
Lsat_1_v5_gn_0_840 Lactuca sativa HOM05D000792 ORTHO05D004195 4.3e-78 295.0 209 68.4
MBI18_g25810_MAGBIO Magnolia biondii HOM05D000792 ORTHO05D004195 7.3e-78 294.3 199 70.4
PSO170G0948 Papaver somniferum HOM05D000792 ORTHO05D004195 1.6e-77 293.1 198 66.7
COL.COLO4_13633 Corchorus olitorius HOM05D000792 ORTHO05D004195 1.4e-76 290.0 198 71.7
AUR62005021 Chenopodium quinoa HOM05D000792 ORTHO05D004195 1.5e-75 286.6 198 70.7
Lj9A672G81 Lonicera japonica HOM05D000792 ORTHO05D004195 2.0e-75 286.2 201 70.6
ClCG02G016330 Citrullus lanatus HOM05D000792 ORTHO05D004195 8.4e-74 280.8 167 77.8
CDE02G3582 Ceratophyllum demersum HOM05D000792 ORTHO05D004195 1.1e-73 280.4 199 65.3
MBI19_g08863_MAGBIO Magnolia biondii HOM05D000792 ORTHO05D004195 1.9e-73 279.6 199 65.8
C05p62150 Brassica napus HOM05D000792 ORTHO05D004195 5.4e-73 278.1 198 67.2
BolC5t34873H Brassica oleracea HOM05D000792 ORTHO05D004195 5.4e-73 278.1 198 67.2
A05p42490 Brassica napus HOM05D000792 ORTHO05D004195 2.1e-72 276.2 198 67.2
BraA05t23003Z Brassica rapa HOM05D000792 ORTHO05D004195 2.1e-72 276.2 198 67.2
THA.LOC104821692 Tarenaya hassleriana HOM05D000792 ORTHO05D004195 2.1e-72 276.2 199 64.8
Aqoxy2G03096 Aquilegia oxysepala HOM05D000792 ORTHO05D004195 2.7e-72 275.8 199 65.3
CDE09G0368 Ceratophyllum demersum HOM05D000792 ORTHO05D004195 4.6e-72 275.0 199 64.8
AL3G15470 Arabidopsis lyrata HOM05D000792 ORTHO05D004195 1.3e-71 273.5 198 67.2
AT3G05090 Arabidopsis thaliana HOM05D000792 ORTHO05D004195 3.0e-71 272.3 198 65.2
THA.LOC104818655 Tarenaya hassleriana HOM05D000792 ORTHO05D004195 3.0e-71 272.3 198 65.7
SEGI_34645 Sequoiadendron giganteum HOM05D000792 ORTHO05D004195 3.9e-71 271.9 198 62.1
Thhalv10020130m.g Eutrema salsugineum HOM05D000792 ORTHO05D004195 5.1e-71 271.6 198 65.7
Carub.0003s0433 Capsella rubella HOM05D000792 ORTHO05D004195 6.6e-71 271.2 201 65.7
Aa31LG5G15360 Aethionema arabicum HOM05D000792 ORTHO05D004195 8.7e-71 270.8 198 66.2
A03p33980 Brassica napus HOM05D000792 ORTHO05D004195 1.5e-70 270.0 198 63.6
BraA03t12573Z Brassica rapa HOM05D000792 ORTHO05D004195 1.5e-70 270.0 198 63.6
BcaC01g04335 Brassica carinata HOM05D000792 ORTHO05D004195 1.9e-70 269.6 198 65.7
C03p41360 Brassica napus HOM05D000792 ORTHO05D004195 1.9e-70 269.6 198 65.7
BolC3t16419H Brassica oleracea HOM05D000792 ORTHO05D004195 1.9e-70 269.6 198 64.1
Lsat_1_v5_gn_2_6701 Lactuca sativa HOM05D000792 ORTHO05D004195 1.9e-70 269.6 198 65.7
BcaB04g19281 Brassica carinata HOM05D000792 ORTHO05D004195 2.5e-70 269.2 198 66.2
Sp2g20380 Schrenkiella parvula HOM05D000792 ORTHO05D004195 4.3e-70 268.5 198 66.7
Haze_04306 Corylus avellana HOM05D000792 ORTHO05D004195 2.8e-69 265.8 167 73.7
CARHR079410 Cardamine hirsuta HOM05D000792 ORTHO05D004195 1.1e-68 263.8 203 62.1
BcaC05g29993 Brassica carinata HOM05D000792 ORTHO05D004195 3.4e-67 258.8 198 62.6
Os12g0165000 Oryza sativa ssp. japonica HOM05D000792 ORTHO05D004195 4.4e-67 258.5 201 62.2
vmacro19668 Vaccinium macrocarpon HOM05D000792 ORTHO05D004195 6.4e-66 254.6 153 77.8
Zm00001eb407650 Zea mays HOM05D000792 ORTHO05D004195 2.1e-64 249.6 201 61.7
Mapoly0016s0038 Marchantia polymorpha HOM05D000792 ORTHO05D004195 1.5e-62 243.4 201 58.2
HanXRQChr12g0366721 Helianthus annuus HOM05D000792 ORTHO05D004195 5.6e-62 241.5 200 57.5
Pp3c14_23300 Physcomitrium patens HOM05D000792 ORTHO05D004195 9.6e-62 240.7 206 56.8
AagrBONN_evm.TU.Sc2ySwM_369.430 Anthoceros agrestis HOM05D000792 ORTHO05D004195 2.8e-61 239.2 206 55.8
Pp3c1_36050 Physcomitrium patens HOM05D000792 ORTHO05D004195 1.5e-59 233.4 204 53.9
Pp3c2_9310 Physcomitrium patens HOM05D000792 ORTHO05D004195 3.4e-59 232.3 202 55.0
SMO367G0211 Selaginella moellendorffii HOM05D000792 ORTHO05D004195 1.7e-58 229.9 198 54.0
Glyma.10G159000 Glycine max HOM05D000792 ORTHO05D004195 1.1e-54 217.2 161 64.0
SHI18278 Sapria himalayana HOM05D000792 ORTHO05D004195 1.3e-50 203.8 156 62.2
Phvul.007G184400 Phaseolus vulgaris HOM05D000792 ORTHO05D004195 8.4e-50 201.1 164 55.5
VMungo0720G0333 Vigna mungo HOM05D000792 ORTHO05D004195 2.1e-48 196.4 166 57.8
CBR_g51918 Chara braunii HOM05D000792 ORTHO05D004195 9.6e-46 187.6 246 40.7
Zm00001eb139400 Zea mays HOM05D000792 ORTHO05D004195 9.3e-41 171.0 143 60.8
Sp3g03910 Schrenkiella parvula HOM05D000792 ORTHO05D004195 3.4e-27 125.9 84 69.0
PRCOL_00004864 Prasinoderma coloniale HOM05D000792 ORTHO05D004195 4.2e-25 119.0 195 35.9
Cre13.g583250 Chlamydomonas reinhardtii HOM05D000792 ORTHO05D004195 2.6e-19 99.8 202 32.7
vmacro19669 Vaccinium macrocarpon HOM05D000792 ORTHO05D004195 6.1e-16 88.6 46 89.1
MCO06G155 Micromonas commoda HOM05D000792 ORTHO05D004195 1.4e-15 87.4 202 29.7
CSS0010028 Camellia sinensis var. sinensis HOM05D000792 ORTHO05D004195 5.3e-12 75.5 46 73.9
VMungo0251G2782 Vigna mungo HOM05D000792 ORTHO05D004195 1.1e-09 67.8 53 58.5
CAN.G97.24 Capsicum annuum HOM05D002023 ORTHO05D002049 2.7e-08 63.2 35 80.0


User provided reference genes

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