Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g023570.2 Solanum lycopersicum HOM05D000792 ORTHO05D004195 9.2e-53 209.9 103 100.0
Sopen08g008890 Solanum pennellii HOM05D000792 ORTHO05D004195 8.3e-46 186.8 93 97.8
Dinv03363 Davidia involucrata HOM05D000792 ORTHO05D004195 8.1e-33 143.7 99 72.7
Potri.005G046500 Populus trichocarpa HOM05D000792 ORTHO05D004195 2.6e-31 138.7 98 73.5
Potri.013G033800 Populus trichocarpa HOM05D000792 ORTHO05D004195 3.4e-31 138.3 98 73.5
Sabra05G0042400 Salix brachista HOM05D000792 ORTHO05D004195 4.4e-31 137.9 98 72.4
RcHm_v2.0_Chr3g0452571 Rosa chinensis HOM05D000792 ORTHO05D004195 5.8e-31 137.5 98 72.4
Thecc.05G291700 Theobroma cacao HOM05D000792 ORTHO05D004195 7.5e-31 137.1 98 69.4
Gohir.D11G267100 Gossypium hirsutum HOM05D000792 ORTHO05D004195 1.3e-30 136.3 97 70.1
Nn3g21306 Nelumbo nucifera HOM05D000792 ORTHO05D004195 1.3e-30 136.3 99 72.7
TAR362G1040 Trochodendron aralioides HOM05D000792 ORTHO05D004195 2.2e-30 135.6 104 68.3
TAR636G2564 Trochodendron aralioides HOM05D000792 ORTHO05D004195 2.2e-30 135.6 99 71.7
Gorai.007G286900 Gossypium raimondii HOM05D000792 ORTHO05D004195 2.9e-30 135.2 97 70.1
Sabra13G0033000 Salix brachista HOM05D000792 ORTHO05D004195 2.9e-30 135.2 97 72.2
Peaxi162Scf00071g00939 Petunia axillaris HOM05D000792 ORTHO05D004195 3.7e-30 134.8 92 73.9
ECA233G2068 Erigeron canadensis HOM05D000792 ORTHO05D004195 4.9e-30 134.4 93 72.0
Duzib128G1364 Durio zibethinus HOM05D000792 ORTHO05D004195 6.4e-30 134.0 98 69.4
Phvul.006G097800 Phaseolus vulgaris HOM05D000792 ORTHO05D004195 6.4e-30 134.0 98 72.4
Glyma.03G243800 Glycine max HOM05D000792 ORTHO05D004195 1.4e-29 132.9 100 70.0
VMungo0540G1958 Vigna mungo HOM05D000792 ORTHO05D004195 1.4e-29 132.9 97 70.1
Sed0009127 Sechium edule HOM05D000792 ORTHO05D004195 3.2e-29 131.7 95 71.6
arahy.Tifrunner.gnm1.ann1.JA3EPN Arachis hypogaea HOM05D000792 ORTHO05D004195 4.1e-29 131.3 99 69.7
GSVIVG01021896001 Vitis vinifera HOM05D000792 ORTHO05D004195 4.1e-29 131.3 115 62.6
arahy.Tifrunner.gnm1.ann1.GRVM6J Arachis hypogaea HOM05D000792 ORTHO05D004195 5.4e-29 131.0 98 69.4
MD04G1217000 Malus domestica HOM05D000792 ORTHO05D004195 5.4e-29 131.0 98 69.4
CSS0015984 Camellia sinensis var. sinensis HOM05D000792 ORTHO05D004195 7.1e-29 130.6 99 68.7
CSS0038276 Camellia sinensis var. sinensis HOM05D000792 ORTHO05D004195 7.1e-29 130.6 99 68.7
MELO3C004353.2 Cucumis melo HOM05D000792 ORTHO05D004195 7.1e-29 130.6 95 70.5
CsaV3_2G004410 Cucumis sativus L. HOM05D000792 ORTHO05D004195 7.1e-29 130.6 95 70.5
Lj1g0010529 Lotus japonicus HOM05D000792 ORTHO05D004195 7.1e-29 130.6 98 69.4
Duzib177G0519 Durio zibethinus HOM05D000792 ORTHO05D004195 9.2e-29 130.2 98 66.3
Gohir.A08G213900 Gossypium hirsutum HOM05D000792 ORTHO05D004195 9.2e-29 130.2 98 67.3
Gohir.D08G230900 Gossypium hirsutum HOM05D000792 ORTHO05D004195 9.2e-29 130.2 100 66.0
Actinidia05754 Actinidia chinensis HOM05D000792 ORTHO05D004195 1.2e-28 129.8 95 71.6
Glyma.19G241300 Glycine max HOM05D000792 ORTHO05D004195 1.6e-28 129.4 100 69.0
CSS0043695 Camellia sinensis var. sinensis HOM05D000792 ORTHO05D004195 2.1e-28 129.0 99 70.7
CiPaw.08G177700 Carya illinoinensis HOM05D000792 ORTHO05D004195 2.1e-28 129.0 100 67.0
Gorai.004G245300 Gossypium raimondii HOM05D000792 ORTHO05D004195 2.7e-28 128.6 100 65.0
Sed0026552 Sechium edule HOM05D000792 ORTHO05D004195 2.7e-28 128.6 91 73.6
Ca_10069_v3 Cicer arietinum L. HOM05D000792 ORTHO05D004195 3.5e-28 128.3 98 65.3
Ciclev10000367m.g Citrus clementina HOM05D000792 ORTHO05D004195 3.5e-28 128.3 98 68.4
PSO170G0948 Papaver somniferum HOM05D000792 ORTHO05D004195 3.5e-28 128.3 94 71.3
Psat0s4348g0040 Pisum sativum HOM05D000792 ORTHO05D004195 3.5e-28 128.3 98 66.3
Sopen01g041660 Solanum pennellii HOM05D000792 ORTHO05D004195 3.5e-28 128.3 98 68.4
CSS0027954 Camellia sinensis var. sinensis HOM05D000792 ORTHO05D004195 4.6e-28 127.9 95 72.6
CiPaw.07G009200 Carya illinoinensis HOM05D000792 ORTHO05D004195 4.6e-28 127.9 97 69.1
Glyma.03G244500 Glycine max HOM05D000792 ORTHO05D004195 4.6e-28 127.9 94 68.1
TAR365G0075 Trochodendron aralioides HOM05D000792 ORTHO05D004195 4.6e-28 127.9 101 67.3
Eucgr.H04403 Eucalyptus grandis HOM05D000792 ORTHO05D004195 6.0e-28 127.5 93 67.7
Medtr1g081830 Medicago truncatula HOM05D000792 ORTHO05D004195 6.0e-28 127.5 100 64.0
Manes.08G126500 Manihot esculenta HOM05D000792 ORTHO05D004195 7.8e-28 127.1 99 69.7
Manes.09G158100 Manihot esculenta HOM05D000792 ORTHO05D004195 7.8e-28 127.1 99 67.7
Prupe.6G336900 Prunus persica HOM05D000792 ORTHO05D004195 7.8e-28 127.1 98 67.3
FvH4_6g03981 Fragaria vesca HOM05D000792 ORTHO05D004195 1.0e-27 126.7 96 70.8
Nitab4.5_0000245g0030 Nicotiana tabacum HOM05D000792 ORTHO05D004195 1.0e-27 126.7 99 67.7
Gohir.A13G171400 Gossypium hirsutum HOM05D000792 ORTHO05D004195 1.7e-27 125.9 97 64.9
HanXRQChr14g0429451 Helianthus annuus HOM05D000792 ORTHO05D004195 2.3e-27 125.6 93 69.9
MD12G1233700 Malus domestica HOM05D000792 ORTHO05D004195 2.3e-27 125.6 98 67.3
Oeu003790.1 Olea europaea HOM05D000792 ORTHO05D004195 3.9e-27 124.8 93 67.7
Ca_09396_v3 Cicer arietinum L. HOM05D000792 ORTHO05D004195 5.1e-27 124.4 100 66.0
Gohir.A13G106300 Gossypium hirsutum HOM05D000792 ORTHO05D004195 6.6e-27 124.0 97 66.0
SalBow5G1543 Salvia bowleyana HOM05D000792 ORTHO05D004195 6.6e-27 124.0 99 63.6
Cpa.g.sc117.38 Carica papaya HOM05D000792 ORTHO05D004195 8.6e-27 123.6 91 71.4
Cc02_g31260 Coffea canephora HOM05D000792 ORTHO05D004195 1.1e-26 123.2 97 68.0
Duzib106G0823 Durio zibethinus HOM05D000792 ORTHO05D004195 1.1e-26 123.2 98 66.3
SGA_v2.0_scaffold15G07272 Striga asiatica HOM05D000792 ORTHO05D004195 1.1e-26 123.2 99 64.6
Glyma.19G241800 Glycine max HOM05D000792 ORTHO05D004195 1.5e-26 122.9 98 63.3
Gorai.013G122600 Gossypium raimondii HOM05D000792 ORTHO05D004195 1.5e-26 122.9 97 66.0
TWI36G0731 Tripterygium wilfordii HOM05D000792 ORTHO05D004195 1.5e-26 122.9 99 64.6
Rhsim05G0148700 Rhododendron simsii HOM05D000792 ORTHO05D004195 1.9e-26 122.5 108 63.0
Gohir.D13G109000 Gossypium hirsutum HOM05D000792 ORTHO05D004195 2.5e-26 122.1 97 64.9
Psat3g008760 Pisum sativum HOM05D000792 ORTHO05D004195 4.3e-26 121.3 100 64.0
TPR.G7014 Trifolium pratense HOM05D000792 ORTHO05D004195 4.3e-26 121.3 100 64.0
Migut.K00761 Erythranthe guttata HOM05D000792 ORTHO05D004195 5.6e-26 120.9 97 61.9
TWI12G0870 Tripterygium wilfordii HOM05D000792 ORTHO05D004195 5.6e-26 120.9 99 64.6
Phvul.006G098200 Phaseolus vulgaris HOM05D000792 ORTHO05D004195 7.3e-26 120.6 99 63.6
Hund22093 Selenicereus undatus HOM05D000792 ORTHO05D004195 7.3e-26 120.6 99 64.6
Gohir.D13G176800 Gossypium hirsutum HOM05D000792 ORTHO05D004195 9.5e-26 120.2 97 61.9
Gorai.013G202200 Gossypium raimondii HOM05D000792 ORTHO05D004195 9.5e-26 120.2 97 61.9
Lj5g0000884 Lotus japonicus HOM05D000792 ORTHO05D004195 9.5e-26 120.2 100 63.0
Medtr7g114370 Medicago truncatula HOM05D000792 ORTHO05D004195 3.6e-25 118.2 101 64.4
PGR004G0598 Punica granatum HOM05D000792 ORTHO05D004195 3.6e-25 118.2 92 65.2
Aqoxy2G03096 Aquilegia oxysepala HOM05D000792 ORTHO05D004195 4.7e-25 117.9 98 66.3
MSTRG.3420 Avicennia marina HOM05D000792 ORTHO05D004195 6.2e-25 117.5 93 63.4
FAN02G1626 Fragaria x ananassa HOM05D000792 ORTHO05D004195 6.2e-25 117.5 106 63.2
Lalb_Chr18g0045241 Lupinus albus HOM05D000792 ORTHO05D004195 1.4e-24 116.3 97 64.9
THA.LOC104818655 Tarenaya hassleriana HOM05D000792 ORTHO05D004195 1.4e-24 116.3 96 66.7
Os12g0165000 Oryza sativa ssp. japonica HOM05D000792 ORTHO05D004195 1.8e-24 115.9 97 62.9
Zm00001eb407650 Zea mays HOM05D000792 ORTHO05D004195 2.4e-24 115.5 97 63.9
AUR62005021 Chenopodium quinoa HOM05D000792 ORTHO05D004195 4.0e-24 114.8 98 62.2
vmacro19668 Vaccinium macrocarpon HOM05D000792 ORTHO05D004195 4.0e-24 114.8 123 54.5
Sp2g20380 Schrenkiella parvula HOM05D000792 ORTHO05D004195 1.2e-23 113.2 88 65.9
Lalb_Chr15g0076961 Lupinus albus HOM05D000792 ORTHO05D004195 1.5e-23 112.8 98 62.2
Thhalv10020130m.g Eutrema salsugineum HOM05D000792 ORTHO05D004195 2.0e-23 112.5 94 66.0
HPP92_016897 Vanilla planifolia HOM05D000792 ORTHO05D004195 2.0e-23 112.5 97 59.8
A05p42490 Brassica napus HOM05D000792 ORTHO05D004195 7.6e-23 110.5 90 67.8
BraA05t23003Z Brassica rapa HOM05D000792 ORTHO05D004195 7.6e-23 110.5 90 67.8
AL3G15470 Arabidopsis lyrata HOM05D000792 ORTHO05D004195 1.3e-22 109.8 95 64.2
BcaC05g29993 Brassica carinata HOM05D000792 ORTHO05D004195 1.7e-22 109.4 94 63.8
Aa31LG5G15360 Aethionema arabicum HOM05D000792 ORTHO05D004195 2.2e-22 109.0 95 64.2
Mapoly0016s0038 Marchantia polymorpha HOM05D000792 ORTHO05D004195 2.9e-22 108.6 96 58.3
ATR0772G088 Amborella trichopoda HOM05D000792 ORTHO05D004195 4.9e-22 107.8 98 57.1
BcaC01g04335 Brassica carinata HOM05D000792 ORTHO05D004195 4.9e-22 107.8 99 60.6
C03p41360 Brassica napus HOM05D000792 ORTHO05D004195 4.9e-22 107.8 99 60.6
BolC3t16419H Brassica oleracea HOM05D000792 ORTHO05D004195 6.4e-22 107.5 99 59.6
BcaB04g19281 Brassica carinata HOM05D000792 ORTHO05D004195 1.1e-21 106.7 94 62.8
A03p33980 Brassica napus HOM05D000792 ORTHO05D004195 1.4e-21 106.3 99 59.6
BraA03t12573Z Brassica rapa HOM05D000792 ORTHO05D004195 1.4e-21 106.3 99 59.6
AT3G05090 Arabidopsis thaliana HOM05D000792 ORTHO05D004195 2.4e-21 105.5 95 61.1
Carub.0003s0433 Capsella rubella HOM05D000792 ORTHO05D004195 4.2e-21 104.8 95 62.1
SEGI_34645 Sequoiadendron giganteum HOM05D000792 ORTHO05D004195 4.2e-21 104.8 97 59.8
THA.LOC104821692 Tarenaya hassleriana HOM05D000792 ORTHO05D004195 7.1e-21 104.0 94 60.6
C05p62150 Brassica napus HOM05D000792 ORTHO05D004195 1.6e-20 102.8 90 65.6
BolC5t34873H Brassica oleracea HOM05D000792 ORTHO05D004195 1.6e-20 102.8 90 65.6
CARHR079410 Cardamine hirsuta HOM05D000792 ORTHO05D004195 4.6e-20 101.3 99 57.6
Lj7C479G6 Lonicera japonica HOM05D000792 ORTHO05D004195 1.0e-19 100.1 115 52.2
SHI18278 Sapria himalayana HOM05D000792 ORTHO05D004195 1.7e-19 99.4 106 52.8
Nitab4.5_0000087g0250 Nicotiana tabacum HOM05D000792 ORTHO05D004195 2.3e-19 99.0 67 68.7
Dinv17744 Davidia involucrata HOM05D000792 ORTHO05D004195 6.6e-19 97.4 80 63.8
Pp3c2_9310 Physcomitrium patens HOM05D000792 ORTHO05D004195 7.3e-18 94.0 98 49.0
FAN09G2107 Fragaria x ananassa HOM05D000792 ORTHO05D004195 2.1e-17 92.4 91 56.0
SMO367G0211 Selaginella moellendorffii HOM05D000792 ORTHO05D004195 3.6e-17 91.7 90 60.0
Lsat_1_v5_gn_0_840 Lactuca sativa HOM05D000792 ORTHO05D004195 1.1e-16 90.1 95 56.8
Lj9A672G81 Lonicera japonica HOM05D000792 ORTHO05D004195 1.1e-16 90.1 93 52.7
Pp3c1_36050 Physcomitrium patens HOM05D000792 ORTHO05D004195 1.4e-16 89.7 95 48.4
Pp3c14_23300 Physcomitrium patens HOM05D000792 ORTHO05D004195 7.6e-15 84.0 102 49.0
QL03p000120 Quercus lobata HOM05D000792 ORTHO05D004195 1.3e-14 83.2 76 63.2
COL.COLO4_13633 Corchorus olitorius HOM05D000792 ORTHO05D004195 3.8e-14 81.6 62 66.1
Oeu004838.1 Olea europaea HOM05D000792 ORTHO05D004195 1.4e-13 79.7 82 53.7
HanXRQChr16g0498011 Helianthus annuus HOM05D000792 ORTHO05D004195 1.9e-13 79.3 60 70.0
MBI19_g08863_MAGBIO Magnolia biondii HOM05D000792 ORTHO05D004195 3.2e-13 78.6 88 51.1
Nitab4.5_0006443g0030 Nicotiana tabacum HOM05D000792 ORTHO05D004195 4.2e-13 78.2 63 63.5
Peaxi162Scf00225g00310 Petunia axillaris HOM05D000792 ORTHO05D004195 4.2e-13 78.2 68 63.2
FAN05G0287 Fragaria x ananassa HOM05D000792 ORTHO05D004195 3.5e-12 75.1 74 58.1
FAN05G4969 Fragaria x ananassa HOM05D000792 ORTHO05D004195 3.5e-12 75.1 74 58.1
Ah.06g192810 Amaranthus hybridus HOM05D000792 ORTHO05D004195 6.0e-12 74.3 63 63.5
VMungo0540G0969 Vigna mungo HOM05D000792 ORTHO05D004195 7.8e-12 73.9 66 60.6
CDE02G3582 Ceratophyllum demersum HOM05D000792 ORTHO05D004195 3.0e-11 72.0 68 63.2
CDE09G0368 Ceratophyllum demersum HOM05D000792 ORTHO05D004195 3.0e-11 72.0 68 63.2
DCAR_029743 Daucus carota HOM05D000792 ORTHO05D004195 3.0e-11 72.0 68 58.8
HanXRQChr12g0366721 Helianthus annuus HOM05D000792 ORTHO05D004195 3.9e-11 71.6 92 42.4
Solyc01g098090.3 Solanum lycopersicum HOM05D000792 ORTHO05D004195 1.5e-10 69.7 64 57.8
MBI18_g25810_MAGBIO Magnolia biondii HOM05D000792 ORTHO05D004195 9.6e-10 67.0 62 61.3
Lsat_1_v5_gn_8_29340 Lactuca sativa HOM05D000792 ORTHO05D004195 2.8e-09 65.5 61 62.3
FAN14G0951 Fragaria x ananassa HOM05D000792 ORTHO05D004195 8.1e-09 63.9 59 64.4
AagrBONN_evm.TU.Sc2ySwM_369.430 Anthoceros agrestis HOM05D000792 ORTHO05D004195 1.4e-08 63.2 78 47.4
EL10Ac4g09219 Beta vulgaris HOM05D000792 ORTHO05D004195 1.8e-08 62.8 62 58.1
Lsat_1_v5_gn_2_6701 Lactuca sativa HOM05D000792 ORTHO05D004195 4.5e-07 58.2 60 56.7


User provided reference genes

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