Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g023270.3 Solanum lycopersicum HOM05D006030 ORTHO05D007475 2.8e-169 598.6 312 100.0
Sopen08g008180 Solanum pennellii HOM05D006030 ORTHO05D007475 2.8e-169 598.6 312 100.0
PGSC0003DMG400005380 Solanum tuberosum HOM05D006030 ORTHO05D007475 4.1e-165 584.7 312 97.4
CAN.G36.30 Capsicum annuum HOM05D006030 ORTHO05D007475 6.2e-145 517.7 312 88.1
Nitab4.5_0008802g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 5.3e-144 514.6 321 86.3
Nitab4.5_0000315g0160 Nicotiana tabacum HOM05D006030 ORTHO05D007475 9.0e-144 513.8 322 86.0
Peaxi162Scf00045g00235 Petunia axillaris HOM05D000253 ORTHO05D000149 3.2e-141 505.4 319 84.6
Nitab4.5_0002900g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 5.5e-101 371.7 321 65.1
Peaxi162Scf00333g00215 Petunia axillaris HOM05D006030 ORTHO05D007475 5.5e-101 371.7 298 68.8
Nitab4.5_0000717g0050 Nicotiana tabacum HOM05D006030 ORTHO05D007475 1.4e-99 367.1 321 64.8
Hma1.2p1_0689F.1_g203740 Hydrangea macrophylla HOM05D006030 ORTHO05D007475 6.5e-94 348.2 320 61.2
Dinv21492 Davidia involucrata HOM05D006030 ORTHO05D007475 1.1e-93 347.4 319 61.8
CSS0019216 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 3.0e-91 339.3 318 58.5
Actinidia39595 Actinidia chinensis HOM05D006030 ORTHO05D007475 1.3e-89 334.0 319 57.4
Rhsim02G0159700 Rhododendron simsii HOM05D006030 ORTHO05D007475 5.4e-88 328.6 320 57.5
CSS0008742 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 2.7e-87 326.2 318 55.0
CSS0023088 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 2.2e-86 323.2 318 56.6
MSTRG.14783 Avicennia marina HOM05D006030 ORTHO05D007475 7.2e-85 318.2 331 58.6
TAR627G0722 Trochodendron aralioides HOM05D006030 ORTHO05D007475 9.8e-82 307.8 320 54.7
Cc09_g08600 Coffea canephora HOM05D006030 ORTHO05D007475 2.8e-81 306.2 324 57.7
ECA236G5152 Erigeron canadensis HOM05D006030 ORTHO05D007475 3.1e-80 302.8 299 55.9
Lj2A324T65 Lonicera japonica HOM05D006030 ORTHO05D007475 4.5e-79 298.9 321 55.5
Sopen02g005930 Solanum pennellii HOM05D006030 ORTHO05D007475 7.8e-79 298.1 297 59.3
PGSC0003DMG400031336 Solanum tuberosum HOM05D006030 ORTHO05D007475 1.7e-78 297.0 297 59.3
Ciclev10015995m.g Citrus clementina HOM05D006030 ORTHO05D007475 6.6e-78 295.0 319 53.6
Solyc02g021450.2 Solanum lycopersicum HOM05D006030 ORTHO05D007475 8.6e-78 294.7 297 58.6
SalBow7G1462 Salvia bowleyana HOM05D006030 ORTHO05D007475 4.3e-77 292.4 335 51.3
SalBow7G3121 Salvia bowleyana HOM05D006030 ORTHO05D007475 4.3e-77 292.4 335 51.3
Atru.chr10.1031 Acer truncatum HOM05D006030 ORTHO05D007475 2.3e-75 286.6 324 51.9
Migut.H01344 Erythranthe guttata HOM05D006030 ORTHO05D007475 1.5e-74 283.9 336 53.6
HanXRQChr04g0112111 Helianthus annuus HOM05D006030 ORTHO05D007475 2.6e-74 283.1 302 53.0
Lj1A1167T61 Lonicera japonica HOM05D006030 ORTHO05D007475 3.4e-74 282.7 305 53.8
Potri.011G091700 Populus trichocarpa HOM05D006030 ORTHO05D007475 3.4e-74 282.7 316 53.8
HanXRQChr15g0481561 Helianthus annuus HOM05D006030 ORTHO05D007475 7.5e-74 281.6 304 53.0
Prupe.4G087600 Prunus persica HOM05D006030 ORTHO05D007475 1.3e-73 280.8 312 51.9
MD10G1256000 Malus domestica HOM05D006030 ORTHO05D007475 2.2e-73 280.0 307 52.4
TAR624G0353 Trochodendron aralioides HOM05D006030 ORTHO05D007475 2.9e-73 279.6 310 52.9
MSTRG.13261 Avicennia marina HOM05D006030 ORTHO05D007475 1.1e-72 277.7 324 52.5
MD05G1060100 Malus domestica HOM05D006030 ORTHO05D007475 3.5e-71 272.7 309 52.1
Haze_05717 Corylus avellana HOM05D006030 ORTHO05D007475 1.3e-70 270.8 296 53.0
CiPaw.09G117700 Carya illinoinensis HOM05D006030 ORTHO05D007475 2.3e-70 270.0 320 50.6
DCAR_007858 Daucus carota HOM05D006030 ORTHO05D007475 3.0e-70 269.6 302 51.7
TWI09G0666 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 1.5e-69 267.3 296 52.0
Cfa000873 Carpinus fangiana HOM05D006030 ORTHO05D007475 2.1e-68 263.5 304 53.0
Sabra11G0085900 Salix brachista HOM05D006030 ORTHO05D007475 3.6e-68 262.7 312 51.9
SalBow8G3821 Salvia bowleyana HOM05D006030 ORTHO05D007475 4.7e-68 262.3 297 52.5
QL05p054330 Quercus lobata HOM05D006030 ORTHO05D007475 4.0e-67 259.2 318 49.1
Lalb_Chr15g0086701 Lupinus albus HOM05D006030 ORTHO05D007475 1.2e-66 257.7 296 51.7
TPR.G26249 Trifolium pratense HOM05D006030 ORTHO05D007475 2.0e-66 256.9 296 49.3
DCAR_027876 Daucus carota HOM05D006030 ORTHO05D007475 7.5e-66 255.0 298 53.0
Lalb_Chr20g0117731 Lupinus albus HOM05D006030 ORTHO05D007475 7.5e-66 255.0 298 51.0
Ca_00520_v3 Cicer arietinum L. HOM05D006030 ORTHO05D007475 1.3e-65 254.2 292 48.3
MBI18_g10587_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 2.9e-65 253.1 323 48.3
Manes.15G125900 Manihot esculenta HOM05D006030 ORTHO05D007475 3.7e-65 252.7 317 49.8
Thecc.02G010100 Theobroma cacao HOM05D006030 ORTHO05D007475 8.3e-65 251.5 302 51.0
TWI53G0643 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 1.4e-64 250.8 294 50.0
SGA_v2.0_scaffold51G18644 Striga asiatica HOM05D006030 ORTHO05D007475 2.7e-63 246.5 292 52.4
Lalb_Chr18g0055221 Lupinus albus HOM05D006030 ORTHO05D007475 3.5e-63 246.1 296 49.3
Lsat_1_v5_gn_1_116040 Lactuca sativa HOM05D006030 ORTHO05D007475 1.3e-62 244.2 313 47.6
Medtr2g018890 Medicago truncatula HOM05D006030 ORTHO05D007475 1.3e-62 244.2 297 48.1
Lj6g0008094 Lotus japonicus HOM05D006030 ORTHO05D007475 3.9e-62 242.7 299 47.2
Lsat_1_v5_gn_7_32280 Lactuca sativa HOM05D006030 ORTHO05D007475 2.5e-61 240.0 289 49.1
FAN11G1717 Fragaria x ananassa HOM05D006030 ORTHO05D007475 5.6e-61 238.8 315 49.2
Psat1g191320 Pisum sativum HOM05D006030 ORTHO05D007475 5.6e-61 238.8 291 47.1
FvH4_3g09520 Fragaria vesca HOM05D006030 ORTHO05D007475 7.3e-61 238.4 315 49.2
FAN16G0477 Fragaria x ananassa HOM05D006030 ORTHO05D007475 2.1e-60 236.9 311 49.8
FAN21G0577 Fragaria x ananassa HOM05D006030 ORTHO05D007475 8.1e-60 235.0 311 49.5
FAN25G1233 Fragaria x ananassa HOM05D006030 ORTHO05D007475 8.1e-60 235.0 310 48.7
Duzib052G0461 Durio zibethinus HOM05D006030 ORTHO05D007475 6.8e-59 231.9 281 50.9
RcHm_v2.0_Chr5g0015101 Rosa chinensis HOM05D006030 ORTHO05D007475 1.2e-58 231.1 313 48.2
Glyma.15G092100 Glycine max HOM05D006030 ORTHO05D007475 1.5e-58 230.7 302 47.4
Duzib132G1046 Durio zibethinus HOM05D006030 ORTHO05D007475 5.8e-58 228.8 299 48.8
DCAR_003876 Daucus carota HOM05D006030 ORTHO05D007475 9.8e-58 228.0 255 52.9
Glyma.13G220300 Glycine max HOM05D006030 ORTHO05D007475 1.3e-57 227.6 304 48.4
Phvul.006G167100 Phaseolus vulgaris HOM05D006030 ORTHO05D007475 1.1e-56 224.6 301 45.2
COL.COLO4_17663 Corchorus olitorius HOM05D006030 ORTHO05D007475 3.2e-56 223.0 307 44.6
Eucgr.E02463 Eucalyptus grandis HOM05D006030 ORTHO05D007475 1.6e-55 220.7 256 51.6
Sc05g0005830 Simmondsia chinensis HOM05D006030 ORTHO05D007475 1.6e-55 220.7 298 46.0
VMungo0540G2189 Vigna mungo HOM05D006030 ORTHO05D007475 1.6e-55 220.7 299 45.8
Aqoxy1G01654 Aquilegia oxysepala HOM05D006030 ORTHO05D007475 2.7e-55 219.9 298 48.0
Manes.17G075000 Manihot esculenta HOM05D006030 ORTHO05D007475 1.3e-54 217.6 311 44.1
CARHR252040 Cardamine hirsuta HOM05D006030 ORTHO05D007475 6.6e-54 215.3 310 41.3
CANSAT35G1388 Cannabis sativa HOM05D006030 ORTHO05D007475 8.6e-54 214.9 348 42.2
Sp6g03610 Schrenkiella parvula HOM05D006030 ORTHO05D007475 1.5e-53 214.2 310 41.0
Thhalv10029201m.g Eutrema salsugineum HOM05D006030 ORTHO05D007475 7.3e-53 211.8 310 41.3
PSO541G2924 Papaver somniferum HOM05D006030 ORTHO05D007475 9.5e-53 211.5 298 46.3
EL10Ac8g19610 Beta vulgaris HOM05D006030 ORTHO05D007475 1.6e-52 210.7 298 43.6
Carub.0006s3344 Capsella rubella HOM05D006030 ORTHO05D007475 2.8e-52 209.9 311 40.8
Aa31LG9G8890 Aethionema arabicum HOM05D006030 ORTHO05D007475 1.1e-51 208.0 314 42.0
AT4G03620 Arabidopsis thaliana HOM05D006030 ORTHO05D007475 1.1e-51 208.0 315 43.2
PSO675G1541 Papaver somniferum HOM05D006030 ORTHO05D007475 1.1e-51 208.0 298 46.0
ClCG03G006430 Citrullus lanatus HOM05D006030 ORTHO05D007475 1.4e-51 207.6 318 44.3
MELO3C002779.2 Cucumis melo HOM05D006030 ORTHO05D007475 2.3e-51 206.8 297 44.4
CsaV3_1G036960 Cucumis sativus L. HOM05D006030 ORTHO05D007475 2.3e-51 206.8 297 42.8
AL6G49160 Arabidopsis lyrata HOM05D006030 ORTHO05D007475 6.8e-51 205.3 314 41.7
BcaB01g01909 Brassica carinata HOM05D006030 ORTHO05D007475 1.5e-50 204.1 307 41.0
AUR62030127 Chenopodium quinoa HOM05D006030 ORTHO05D007475 4.4e-50 202.6 289 43.9
PGR031G1516 Punica granatum HOM05D006030 ORTHO05D007475 4.4e-50 202.6 310 45.8
A09p02880 Brassica napus HOM05D006030 ORTHO05D007475 7.6e-50 201.8 307 40.7
AUR62002659 Chenopodium quinoa HOM05D006030 ORTHO05D007475 7.6e-50 201.8 288 43.8
Hund21555 Selenicereus undatus HOM05D006030 ORTHO05D007475 7.6e-50 201.8 300 43.3
Nn4g26650 Nelumbo nucifera HOM05D006030 ORTHO05D007475 9.9e-50 201.4 291 44.0
Sed0007526 Sechium edule HOM05D006030 ORTHO05D007475 2.9e-49 199.9 284 43.7
BraA09t35933Z Brassica rapa HOM05D006030 ORTHO05D007475 6.4e-49 198.7 308 41.2
C09p02960 Brassica napus HOM05D006030 ORTHO05D007475 5.4e-48 195.7 307 40.1
Sed0012497 Sechium edule HOM05D006030 ORTHO05D007475 7.1e-48 195.3 294 43.2
arahy.Tifrunner.gnm1.ann1.IB7BS1 Arachis hypogaea HOM05D006030 ORTHO05D007475 9.2e-48 194.9 294 41.2
arahy.Tifrunner.gnm1.ann1.Z0KP5S Arachis hypogaea HOM05D006030 ORTHO05D007475 9.2e-48 194.9 294 41.2
MBI02_g11375_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 9.2e-48 194.9 294 41.2
BcaC04g23958 Brassica carinata HOM05D006030 ORTHO05D007475 3.5e-47 193.0 298 40.9
BolC9t53223H Brassica oleracea HOM05D006030 ORTHO05D007475 3.5e-47 193.0 298 40.9
PSO541G2932 Papaver somniferum HOM05D006030 ORTHO05D007475 4.6e-47 192.6 305 43.3
THA.LOC104806979 Tarenaya hassleriana HOM05D006030 ORTHO05D007475 2.5e-45 186.8 310 39.7
Nn3g20281 Nelumbo nucifera HOM05D006030 ORTHO05D007475 1.1e-43 181.4 265 41.5
PSO675G3639 Papaver somniferum HOM05D006030 ORTHO05D007475 1.1e-43 181.4 305 41.6
GSVIVG01021577001 Vitis vinifera HOM05D006030 ORTHO05D007475 4.9e-41 172.6 198 52.5
Ah.09g232450 Amaranthus hybridus HOM05D006030 ORTHO05D007475 1.1e-40 171.4 268 39.9
arahy.Tifrunner.gnm1.ann1.TN2AI9 Arachis hypogaea HOM05D006030 ORTHO05D007475 5.4e-40 169.1 282 39.0
arahy.Tifrunner.gnm1.ann1.DKT922 Arachis hypogaea HOM05D006030 ORTHO05D007475 1.6e-39 167.5 279 38.4
Migut.M01870 Erythranthe guttata HOM05D006030 ORTHO05D007475 3.1e-35 153.3 139 61.2
Peaxi162Scf00333g00214 Petunia axillaris HOM05D006030 ORTHO05D007475 1.6e-28 131.0 118 63.6
Cpa.g.sc17.66 Carica papaya HOM05D006030 ORTHO05D007475 8.1e-28 128.6 165 46.7
unitig_37.g12083 Utricularia gibba HOM05D006030 ORTHO05D007475 2.6e-26 123.6 176 48.9
ATR0626G038 Amborella trichopoda HOM05D006030 ORTHO05D007475 1.6e-23 114.4 161 43.5
HPP92_019506 Vanilla planifolia HOM05D006030 ORTHO05D007475 7.9e-23 112.1 306 35.3
SEGI_26103 Sequoiadendron giganteum HOM05D006030 ORTHO05D007475 7.1e-16 89.0 178 37.1
Nn1g09396 Nelumbo nucifera HOM05D006030 ORTHO05D007475 1.5e-10 71.2 164 31.1
Duzib248G1648 Durio zibethinus HOM05D006030 ORTHO05D007475 3.4e-10 70.1 115 41.7
SGA_v2.0_scaffold106G30660 Striga asiatica HOM05D006030 ORTHO05D007475 9.3e-08 62.0 90 40.0
Actinidia26538 Actinidia chinensis HOM05D006030 ORTHO05D007475 2.7e-07 60.5 98 40.8


User provided reference genes

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